assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003353065.1_ASM335306v1	CP027806	Candidatus Cyclonatronum proteinivorum strain Omega chromosome, complete genome	5	1712788-1712864	5	CRISPRCasFinder	no		WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	Orphan	CAATAATGTCACCCCTTCGGGGTTT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	NA|45aa|up_5|CP027806.1_1701509_1701644_-,NA|214aa|up_4|CP027806.1_1702304_1702946_+,NA|95aa|down_1|CP027806.1_1715254_1715539_-,NA|73aa|down_5|CP027806.1_1720422_1720641_-	NA|285aa|up_9|CP027806.1_1696241_1697096_+	PRK14960, PRK14960, DNA polymerase III subunit gamma/tau	NA|162aa|up_8|CP027806.1_1697206_1697692_+	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|425aa|up_7|CP027806.1_1697835_1699110_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|675aa|up_6|CP027806.1_1699206_1701231_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|45aa|up_5|CP027806.1_1701509_1701644_-	NA	NA|214aa|up_4|CP027806.1_1702304_1702946_+	NA	NA|1020aa|up_3|CP027806.1_1703518_1706578_-	COG5498, ACF2, Predicted glycosyl hydrolase [Cell envelope biogenesis, outer membrane]	NA|1301aa|up_2|CP027806.1_1706902_1710805_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|172aa|up_1|CP027806.1_1711241_1711757_-	pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain	NA|154aa|up_0|CP027806.1_1712305_1712767_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|539aa|down_0|CP027806.1_1713392_1715009_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|95aa|down_1|CP027806.1_1715254_1715539_-	NA	NA|460aa|down_2|CP027806.1_1715619_1716999_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|301aa|down_3|CP027806.1_1716975_1717878_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|701aa|down_4|CP027806.1_1718273_1720376_-	PRK13560, PRK13560, hypothetical protein; Provisional	NA|73aa|down_5|CP027806.1_1720422_1720641_-	NA	NA|336aa|down_6|CP027806.1_1721073_1722081_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|425aa|down_7|CP027806.1_1722118_1723393_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|431aa|down_8|CP027806.1_1723653_1724946_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|410aa|down_9|CP027806.1_1725149_1726379_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
GCA_003353065.1_ASM335306v1	CP027806	Candidatus Cyclonatronum proteinivorum strain Omega chromosome, complete genome	6	1925779-1928915	6,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas9	WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	 Type II-B,Type II-A,Type II-B, or Type II-C?,Type II-C	GCTGTGATTTGAACTGAGATTGGGATTTCAGATATT,GCTGTGATTTGAACTGAGATTGGGATTTCAGATATT,GCTGTGATTTGAACTGAGATTGGGATTTCAGATATT,GCTGTGATTTGAACTGAGATTGGGATTTCAGATATT	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	47,47,40,40	47	TypeII-B,TypeII-A,TypeII-B,orTypeII-C?,TypeII-C	WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	NA|234aa|up_1|CP027806.1_1924511_1925213_+,NA|171aa|up_0|CP027806.1_1925252_1925765_+,NA	NA|715aa|up_9|CP027806.1_1912563_1914708_+	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated	NA|402aa|up_8|CP027806.1_1917096_1918302_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|407aa|up_7|CP027806.1_1918489_1919710_+	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|189aa|up_6|CP027806.1_1919678_1920245_+	cd07005, cupin_WbuC-like, Escherichia coli WbuC and related proteins, cupin domain	NA|373aa|up_5|CP027806.1_1920286_1921405_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|272aa|up_4|CP027806.1_1922026_1922842_+	cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes	NA|165aa|up_3|CP027806.1_1922947_1923442_+	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|335aa|up_2|CP027806.1_1923507_1924512_+	cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains	NA|234aa|up_1|CP027806.1_1924511_1925213_+	NA	NA|171aa|up_0|CP027806.1_1925252_1925765_+	NA	cas2|113aa|down_0|CP027806.1_1929015_1929354_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|296aa|down_1|CP027806.1_1929382_1930270_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1473aa|down_2|CP027806.1_1930273_1934692_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|175aa|down_3|CP027806.1_1934944_1935469_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|725aa|down_4|CP027806.1_1942258_1944433_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|376aa|down_5|CP027806.1_1944480_1945608_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|473aa|down_6|CP027806.1_1946158_1947577_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|244aa|down_7|CP027806.1_1947578_1948310_+	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|320aa|down_8|CP027806.1_1948387_1949347_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|163aa|down_9|CP027806.1_1949327_1949816_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]
GCA_003353065.1_ASM335306v1	CP027806	Candidatus Cyclonatronum proteinivorum strain Omega chromosome, complete genome	7	2613794-2613884	7	CRISPRCasFinder	no		WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	Orphan	AAGCCCTGAAAGGGCGACATACCA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	NA|36aa|up_7|CP027806.1_2605978_2606086_+,NA|245aa|up_2|CP027806.1_2610971_2611706_-,NA|84aa|up_1|CP027806.1_2611744_2611996_+,NA|121aa|down_6|CP027806.1_2624156_2624519_+	NA|258aa|up_9|CP027806.1_2603813_2604587_-	sd00045, ANK, ankyrin repeats	NA|327aa|up_8|CP027806.1_2604965_2605946_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|36aa|up_7|CP027806.1_2605978_2606086_+	NA	NA|310aa|up_6|CP027806.1_2606078_2607008_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|287aa|up_5|CP027806.1_2607605_2608466_-	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR	NA|592aa|up_4|CP027806.1_2608468_2610244_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|148aa|up_3|CP027806.1_2610515_2610959_+	TIGR00369, Putative_esterase, uncharacterized domain 1	NA|245aa|up_2|CP027806.1_2610971_2611706_-	NA	NA|84aa|up_1|CP027806.1_2611744_2611996_+	NA	NA|422aa|up_0|CP027806.1_2612008_2613274_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|504aa|down_0|CP027806.1_2614813_2616325_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|306aa|down_1|CP027806.1_2616995_2617913_-	pfam00520, Ion_trans, Ion transport protein	NA|412aa|down_2|CP027806.1_2618253_2619489_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|317aa|down_3|CP027806.1_2619515_2620466_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|504aa|down_4|CP027806.1_2620482_2621994_-	pfam09913, DUF2142, Predicted membrane protein (DUF2142)	NA|668aa|down_5|CP027806.1_2622076_2624080_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|121aa|down_6|CP027806.1_2624156_2624519_+	NA	NA|140aa|down_7|CP027806.1_2624522_2624942_+	PRK03124, PRK03124, S-adenosylmethionine decarboxylase proenzyme; Provisional	NA|157aa|down_8|CP027806.1_2625033_2625504_+	PRK01285, PRK01285, pyruvoyl-dependent arginine decarboxylase; Reviewed	NA|286aa|down_9|CP027806.1_2625618_2626476_+	PRK00811, PRK00811, polyamine aminopropyltransferase
GCA_003353065.1_ASM335306v1	CP027806	Candidatus Cyclonatronum proteinivorum strain Omega chromosome, complete genome	8	4135781-4138069	3,8,2	PILER-CR,CRISPRCasFinder,CRT	no	csx1,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	Type III-B,Type III-C,Type III-D,Type III-A	CTCTCAATCGTACCTATGTGGCATTGTGAC,CTCTCAATCGTACCTATGTGGCATTGTGAC,CTCTCAATCGTACCTATGTGGCATTGTGAC	30,30,30	0	0	NA	NA	NA:NA:NA	32,34,34	34	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	WYL,csa3,PD-DExK,cas3,csx1,cas2,cas1,cas9,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx20	NA|271aa|up_7|CP027806.1_4123825_4124638_+,NA	NA|188aa|up_9|CP027806.1_4121560_4122124_+	pfam02169, LPP20, LPP20 lipoprotein	NA|525aa|up_8|CP027806.1_4122238_4123813_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|271aa|up_7|CP027806.1_4123825_4124638_+	NA	NA|842aa|up_6|CP027806.1_4124770_4127296_-	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	csx1|422aa|up_5|CP027806.1_4127893_4129159_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|139aa|up_4|CP027806.1_4129899_4130316_+	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|198aa|up_3|CP027806.1_4130653_4131247_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|361aa|up_2|CP027806.1_4131519_4132602_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|158aa|up_1|CP027806.1_4132576_4133050_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|594aa|up_0|CP027806.1_4133360_4135142_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	cas6|244aa|down_0|CP027806.1_4139600_4140332_+	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas10|871aa|down_1|CP027806.1_4140389_4143002_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|147aa|down_2|CP027806.1_4143015_4143456_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|242aa|down_3|CP027806.1_4143459_4144185_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|337aa|down_4|CP027806.1_4144184_4145195_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|409aa|down_5|CP027806.1_4145255_4146482_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	NA|622aa|down_6|CP027806.1_4146496_4148362_+	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|66aa|down_7|CP027806.1_4148480_4148678_+	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|133aa|down_8|CP027806.1_4148681_4149080_+	cd18760, PIN_MtVapC3-like, uncharacterized subgroup of the VapC3-like nuclease subfamily of the PIN domain superfamily	csx1|385aa|down_9|CP027806.1_4149095_4150250_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)
