assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	1	183198-183282	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	183224-183256|183224-183256	CP022582.1_1451768-1451800|CP022582.1_1540135-1540103	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|CP022582.1_172343_173549_+,NA|68aa|down_0|CP022582.1_183343_183547_-	NA|402aa|up_9|CP022582.1_172343_173549_+	NA	NA|402aa|up_8|CP022582.1_173549_174755_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|CP022582.1_174765_175323_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|CP022582.1_175322_176210_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|CP022582.1_176263_177526_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|CP022582.1_177602_178748_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|CP022582.1_178812_179139_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|CP022582.1_179145_179529_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|CP022582.1_179955_181443_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|CP022582.1_182089_183049_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|CP022582.1_183343_183547_-	NA	NA|171aa|down_1|CP022582.1_183725_184238_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|CP022582.1_184579_185320_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|CP022582.1_185333_186305_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|CP022582.1_186301_187063_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|CP022582.1_187075_188107_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|87aa|down_6|CP022582.1_188422_188683_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|375aa|down_7|CP022582.1_188757_189882_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|CP022582.1_190267_191518_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2398aa|down_9|CP022582.1_191946_199140_+	PRK12467, PRK12467, peptide synthase; Provisional
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	2	422445-422546	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|CP022582.1_412484_412694_-,NA|128aa|up_7|CP022582.1_413518_413902_-,NA|64aa|up_5|CP022582.1_414870_415062_-,NA|221aa|down_1|CP022582.1_423636_424299_-	NA|70aa|up_9|CP022582.1_412484_412694_-	NA	NA|194aa|up_8|CP022582.1_412871_413453_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|CP022582.1_413518_413902_-	NA	NA|209aa|up_6|CP022582.1_414171_414798_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|64aa|up_5|CP022582.1_414870_415062_-	NA	NA|508aa|up_4|CP022582.1_415241_416765_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|CP022582.1_416780_417350_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|CP022582.1_417841_418597_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|CP022582.1_418676_420065_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|440aa|up_0|CP022582.1_420911_422231_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|CP022582.1_422562_423519_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|CP022582.1_423636_424299_-	NA	NA|136aa|down_2|CP022582.1_424441_424849_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP022582.1_425361_425940_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP022582.1_425939_427208_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP022582.1_427245_428712_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP022582.1_428736_430278_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|CP022582.1_430345_431539_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|CP022582.1_431565_431766_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|CP022582.1_432263_432494_-	pfam12645, HTH_16, Helix-turn-helix domain
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	3	798593-798675	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|203aa|up_9|CP022582.1_784532_785141_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|237aa|up_8|CP022582.1_785500_786211_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP022582.1_786194_787199_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP022582.1_787672_789613_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|626aa|up_5|CP022582.1_789888_791766_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP022582.1_791777_793559_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP022582.1_793780_794758_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP022582.1_794750_796265_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP022582.1_796504_797563_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP022582.1_797901_798444_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP022582.1_799322_800240_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|502aa|down_1|CP022582.1_800509_802015_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_2|CP022582.1_802355_802856_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_3|CP022582.1_802875_803742_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_4|CP022582.1_804542_804941_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_5|CP022582.1_804903_807009_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_6|CP022582.1_807126_808098_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|324aa|down_7|CP022582.1_808472_809444_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_8|CP022582.1_809430_810387_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|254aa|down_9|CP022582.1_810383_811145_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	4	839540-839618	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	839564-839594|839564-839594|839564-839594	CP022582.1_306422-306392|CP022582.1_306367-306337|CP022582.1_1800778-1800808	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|96aa|down_5|CP022582.1_844942_845230_-	cas3|318aa|up_9|CP022582.1_825176_826130_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_8|CP022582.1_826122_826797_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_7|CP022582.1_826857_827430_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_6|CP022582.1_827843_830375_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|331aa|up_5|CP022582.1_830807_831800_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|up_4|CP022582.1_832208_833048_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP022582.1_833221_833872_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP022582.1_833868_834105_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP022582.1_834373_836359_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP022582.1_836366_839213_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP022582.1_839876_840809_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP022582.1_840814_841654_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|94aa|down_2|CP022582.1_841865_842147_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|480aa|down_3|CP022582.1_842154_843594_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP022582.1_843660_844596_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|96aa|down_5|CP022582.1_844942_845230_-	NA	NA|304aa|down_6|CP022582.1_845423_846335_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|CP022582.1_846331_847327_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|CP022582.1_847437_848382_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|CP022582.1_848945_849533_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	6	852251-852330	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	6	852275-852306|852275-852306|852275-852306|852275-852306|852275-852306|852275-852306	CP022582.1_84705-84736|CP022582.1_888482-888513|CP022582.1_1780996-1780965|CP022582.1_2197814-2197783|CP022582.1_2587720-2587751|CP022582.1_1451876-1451845	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|96aa|up_6|CP022582.1_844942_845230_-,NA|153aa|down_6|CP022582.1_860347_860806_+	NA|94aa|up_9|CP022582.1_841865_842147_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|480aa|up_8|CP022582.1_842154_843594_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_7|CP022582.1_843660_844596_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|96aa|up_6|CP022582.1_844942_845230_-	NA	NA|304aa|up_5|CP022582.1_845423_846335_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|CP022582.1_846331_847327_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|CP022582.1_847437_848382_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|CP022582.1_848945_849533_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|CP022582.1_849775_850678_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|CP022582.1_851380_852010_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|CP022582.1_852766_853780_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|CP022582.1_853832_854843_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|CP022582.1_854981_856172_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|CP022582.1_856293_857055_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|CP022582.1_857057_858575_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|CP022582.1_858704_860009_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|CP022582.1_860347_860806_+	NA	NA|78aa|down_7|CP022582.1_860872_861106_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|CP022582.1_861221_861962_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|CP022582.1_861995_864368_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	7	888152-888233	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	888176-888209	CP022582.1_1451800-1451767	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|CP022582.1_881254_881836_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|CP022582.1_881908_882526_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|CP022582.1_882680_883175_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|CP022582.1_883573_883996_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|CP022582.1_884143_884860_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|CP022582.1_884942_885482_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|CP022582.1_885632_885953_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|CP022582.1_886096_886453_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|CP022582.1_886610_886991_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|CP022582.1_887169_888048_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|CP022582.1_888844_889231_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP022582.1_889223_889520_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP022582.1_889769_890795_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|CP022582.1_890787_891483_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP022582.1_891500_892322_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|CP022582.1_892675_892870_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|CP022582.1_893103_893955_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|CP022582.1_894282_895044_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|CP022582.1_895141_896449_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|CP022582.1_896563_897805_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	9	2158060-2158141	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2158084-2158117|2158084-2158117|2158084-2158117|2158084-2158117|2158084-2158117	CP022582.1_839539-839572|CP022582.1_1240068-1240035|CP022582.1_1893062-1893029|CP022582.1_1456141-1456174|CP022582.1_2864127-2864160	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|59aa|up_6|CP022582.1_2148452_2148629_-,NA|114aa|down_6|CP022582.1_2165948_2166290_-,NA|193aa|down_9|CP022582.1_2167106_2167685_-	NA|227aa|up_9|CP022582.1_2146240_2146921_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_8|CP022582.1_2146921_2147818_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_7|CP022582.1_2147814_2148195_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_6|CP022582.1_2148452_2148629_-	NA	NA|429aa|up_5|CP022582.1_2149169_2150456_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|578aa|up_4|CP022582.1_2150734_2152468_-	pfam03642, MAP, MAP domain	NA|331aa|up_3|CP022582.1_2152856_2153849_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|CP022582.1_2154086_2155103_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|CP022582.1_2155124_2156180_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|CP022582.1_2156615_2157839_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|CP022582.1_2158282_2159590_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|CP022582.1_2160606_2161329_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|CP022582.1_2161497_2162298_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|CP022582.1_2163084_2163645_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_4|CP022582.1_2164523_2165228_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_5|CP022582.1_2165382_2165952_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_6|CP022582.1_2165948_2166290_-	NA	NA|176aa|down_7|CP022582.1_2166292_2166820_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|CP022582.1_2166870_2167089_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|CP022582.1_2167106_2167685_-	NA
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	10	2173705-2173793	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_9|CP022582.1_2167696_2168038_-,NA|127aa|up_7|CP022582.1_2169125_2169506_-,NA|70aa|up_3|CP022582.1_2172801_2173011_-,NA|49aa|up_2|CP022582.1_2173003_2173150_-,NA	NA|114aa|up_9|CP022582.1_2167696_2168038_-	NA	NA|214aa|up_8|CP022582.1_2168487_2169129_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|CP022582.1_2169125_2169506_-	NA	NA|570aa|up_6|CP022582.1_2169815_2171525_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|CP022582.1_2171538_2172408_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|CP022582.1_2172472_2172799_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|CP022582.1_2172801_2173011_-	NA	NA|49aa|up_2|CP022582.1_2173003_2173150_-	NA	NA|106aa|up_1|CP022582.1_2173146_2173464_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|CP022582.1_2173468_2173687_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|CP022582.1_2173859_2174534_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|CP022582.1_2174547_2175720_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|CP022582.1_2175788_2177405_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|38aa|down_3|CP022582.1_2177480_2177594_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|CP022582.1_2177938_2178682_+	pfam02517, Abi, CAAX protease self-immunity	NA|416aa|down_5|CP022582.1_2178706_2179954_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|CP022582.1_2180150_2180777_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|238aa|down_7|CP022582.1_2181208_2181922_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|188aa|down_8|CP022582.1_2182891_2183455_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|428aa|down_9|CP022582.1_2183630_2184914_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	11	2302661-2302741	10	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|CP022582.1_2297536_2297767_-,NA|306aa|up_0|CP022582.1_2301553_2302471_+,NA|53aa|down_1|CP022582.1_2303860_2304019_+	NA|237aa|up_9|CP022582.1_2293147_2293858_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP022582.1_2293978_2294422_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP022582.1_2294621_2295035_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP022582.1_2295491_2296865_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP022582.1_2297536_2297767_-	NA	NA|313aa|up_4|CP022582.1_2297797_2298736_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP022582.1_2299171_2299837_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP022582.1_2299988_2300309_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|CP022582.1_2300310_2301288_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|306aa|up_0|CP022582.1_2301553_2302471_+	NA	NA|57aa|down_0|CP022582.1_2303697_2303868_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_1|CP022582.1_2303860_2304019_+	NA	NA|286aa|down_2|CP022582.1_2304676_2305534_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP022582.1_2305601_2306384_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP022582.1_2306615_2308421_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP022582.1_2309101_2310640_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP022582.1_2310674_2312807_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP022582.1_2312818_2313253_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP022582.1_2313252_2314359_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|CP022582.1_2314677_2322123_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCA_003351925.1_ASM335192v1	CP022582	Staphylococcus aureus strain FORC_062 chromosome, complete genome	13	2422957-2423037	12	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	13	2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012|2422982-2423012	CP022582.1_852225-852255|CP022582.1_84711-84741|CP022582.1_382218-382188|CP022582.1_673214-673184|CP022582.1_888488-888518|CP022582.1_1098741-1098771|CP022582.1_1245665-1245635|CP022582.1_1451756-1451726|CP022582.1_1540147-1540177|CP022582.1_1780990-1780960|CP022582.1_2098448-2098478|CP022582.1_2412181-2412211|CP022582.1_2587726-2587756	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_7|CP022582.1_2413490_2413655_+,NA|106aa|up_6|CP022582.1_2413899_2414217_+,NA	NA|288aa|up_9|CP022582.1_2410931_2411795_+	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism]	NA|303aa|up_8|CP022582.1_2412449_2413358_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_7|CP022582.1_2413490_2413655_+	NA	NA|106aa|up_6|CP022582.1_2413899_2414217_+	NA	NA|1056aa|up_5|CP022582.1_2414400_2417568_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_4|CP022582.1_2417684_2418950_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|255aa|up_3|CP022582.1_2419581_2420346_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP022582.1_2420507_2420948_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|374aa|up_1|CP022582.1_2421030_2422152_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP022582.1_2422253_2422604_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP022582.1_2423180_2424203_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP022582.1_2424222_2424822_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP022582.1_2424828_2425062_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP022582.1_2425067_2425514_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP022582.1_2425527_2426013_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP022582.1_2426009_2427269_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP022582.1_2427331_2427826_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP022582.1_2427827_2428334_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP022582.1_2428364_2429369_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP022582.1_2429538_2430144_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
