The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	506615	582766	3065679	holin,head,protease,transposase,coat,tRNA,integrase,tail,terminase	Enterococcus_phage(77.19%)	94	506314:506335	547871:547892
506314:506335	attL	ATTTATCGTTTAGCGAAGTAAA	NA	NA	NA	NA
AXG87529.1|506615_507797_-|integrase	site-specific integrase	integrase	A0A126GGK4	Streptococcus_phage	43.5	1.6e-79
AXG87530.1|507906_508671_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A0YSF3	Streptococcus_phage	34.6	2.8e-21
AXG87531.1|508686_509040_-	XRE family transcriptional regulator	NA	A0A1S5SC02	Streptococcus_phage	44.6	1.1e-20
AXG87532.1|509306_509483_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG87533.1|509486_509774_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87534.1|509819_510554_+	oxidoreductase	NA	C9E2M3	Enterococcus_phage	60.6	8.1e-74
AXG87535.1|510698_510914_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87536.1|510897_511626_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87537.1|511762_511954_+	hypothetical protein	NA	A0A0S2MYB0	Enterococcus_phage	92.2	2.8e-18
AXG87538.1|511974_512394_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87539.1|512377_512614_+	hypothetical protein	NA	A0A0S2MYD6	Enterococcus_phage	81.3	2.4e-27
AXG87540.1|512614_513307_+	single-stranded DNA-binding protein	NA	Q6JM07	Lactococcus_phage	44.0	1.8e-22
AXG87541.1|513319_514213_+	DUF1351 domain-containing protein	NA	A0A0S2MYB3	Enterococcus_phage	43.0	7.1e-48
AXG87542.1|514209_514890_+	hypothetical protein	NA	A0A0S2MYA3	Enterococcus_phage	92.9	1.3e-121
AXG87543.1|514895_515381_+	hypothetical protein	NA	A0A1C9LXV1	Streptococcus_phage	47.3	3.5e-33
AXG87544.1|515386_516343_+	phage replisome organizer	NA	C9E2N2	Enterococcus_phage	95.3	1.5e-141
AXG87545.1|516342_516642_+	hypothetical protein	NA	D2IZR4	Enterococcus_phage	89.9	1.0e-43
AXG87546.1|516663_517188_+	hypothetical protein	NA	A0A0S2MYB8	Enterococcus_phage	98.3	1.2e-92
AXG87547.1|517314_517542_+	hypothetical protein	NA	C9E2N4	Enterococcus_phage	98.7	1.0e-35
AXG87548.1|517598_518552_+	DNA cytosine methyltransferase	NA	D2IZY5	Enterococcus_phage	100.0	9.2e-187
AXG87549.1|518527_518743_+	hypothetical protein	NA	D2IZY6	Enterococcus_phage	100.0	2.4e-26
AXG89995.1|518936_519116_+	hypothetical protein	NA	D2IZY7	Enterococcus_phage	100.0	1.2e-26
AXG87550.1|519099_519486_+	hypothetical protein	NA	D2IZY8	Enterococcus_phage	100.0	7.5e-71
AXG87551.1|519482_519833_+	hypothetical protein	NA	D2IZY9	Enterococcus_phage	100.0	6.0e-59
AXG87552.1|519966_520491_+	DUF1642 domain-containing protein	NA	D2IZZ0	Enterococcus_phage	100.0	2.2e-97
AXG87553.1|520491_520677_+	hypothetical protein	NA	D2IZZ1	Enterococcus_phage	100.0	3.5e-26
AXG87554.1|520673_520874_+	hypothetical protein	NA	D2IZZ2	Enterococcus_phage	100.0	9.3e-33
AXG87555.1|520866_520956_+	hypothetical protein	NA	C9E2P4	Enterococcus_phage	100.0	3.6e-05
AXG87556.1|521018_521435_+	autolysin	NA	D2IZZ3	Enterococcus_phage	100.0	5.8e-69
AXG87557.1|521421_521619_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87558.1|522252_522546_+	hypothetical protein	NA	D2IZZ4	Enterococcus_phage	100.0	2.3e-40
AXG87559.1|522593_523928_+	chromosome partitioning protein ParB	NA	D2IZZ5	Enterococcus_phage	100.0	1.7e-255
AXG87560.1|523965_524157_+	hypothetical protein	NA	D2IZZ6	Enterococcus_phage	100.0	1.1e-25
AXG87561.1|524292_524481_+	hypothetical protein	NA	D2IZZ7	Enterococcus_phage	100.0	2.7e-26
AXG87562.1|524733_525177_+	hypothetical protein	NA	D2IZZ9	Enterococcus_phage	100.0	3.7e-74
AXG87563.1|525225_526029_+|terminase	small subunit of terminase	terminase	D2J000	Enterococcus_phage	100.0	1.6e-131
AXG87564.1|526000_527305_+|terminase	PBSX family phage terminase large subunit	terminase	D2J001	Enterococcus_phage	100.0	7.7e-253
AXG87565.1|528725_529037_+|protease	ribosomal-processing cysteine protease Prp	protease	D2J003	Enterococcus_phage	100.0	4.1e-51
AXG87566.1|529037_530186_+|head	phage head morphogenesis protein	head	D2J004	Enterococcus_phage	100.0	4.9e-211
AXG87567.1|530328_530997_+	DUF4355 domain-containing protein	NA	D2J005	Enterococcus_phage	100.0	2.4e-72
AXG87568.1|531012_532050_+|coat	coat protein	coat	D2J006	Enterococcus_phage	100.0	6.5e-194
AXG87569.1|532063_532402_+	hypothetical protein	NA	D2J007	Enterococcus_phage	100.0	3.5e-56
AXG87570.1|532382_532724_+	hypothetical protein	NA	D2J008	Enterococcus_phage	100.0	1.8e-60
AXG87571.1|532723_533263_+	HK97 gp10 family phage protein	NA	D2J009	Enterococcus_phage	100.0	5.5e-96
AXG87572.1|533259_533622_+	hypothetical protein	NA	D2J010	Enterococcus_phage	100.0	1.9e-60
AXG87573.1|533641_534100_+|tail	phage tail protein	tail	D2J011	Enterococcus_phage	100.0	9.5e-81
AXG87574.1|534156_534567_+	hypothetical protein	NA	D2J012	Enterococcus_phage	100.0	1.3e-68
AXG87575.1|534599_534959_+	hypothetical protein	NA	D2J013	Enterococcus_phage	100.0	3.8e-61
AXG89996.1|534974_539504_+|tail	phage tail protein	tail	D2J014	Enterococcus_phage	99.9	0.0e+00
AXG87576.1|539514_539880_+	hypothetical protein	NA	D2J015	Enterococcus_phage	100.0	9.9e-65
AXG87577.1|539896_542314_+	hypothetical protein	NA	D2J016	Enterococcus_phage	100.0	0.0e+00
AXG87578.1|542473_543496_+	hypothetical protein	NA	D2J018	Enterococcus_phage	100.0	3.4e-195
AXG87579.1|543575_543797_+	hypothetical protein	NA	D2J019	Enterococcus_phage	100.0	6.0e-33
AXG87580.1|543789_544026_+|holin	phage holin	holin	D2J020	Enterococcus_phage	100.0	6.2e-36
AXG87581.1|544022_545282_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2MYF3	Enterococcus_phage	91.4	1.0e-225
AXG87582.1|545328_545592_-	hypothetical protein	NA	NA	NA	NA	NA
AXG87583.1|545627_545858_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG87584.1|546314_546800_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87585.1|547063_547639_-	SHOCT domain-containing protein	NA	X5JB37	Clostridium_phage	39.1	5.8e-19
AXG87586.1|548034_548268_+	hypothetical protein	NA	NA	NA	NA	NA
547871:547892	attR	ATTTATCGTTTAGCGAAGTAAA	NA	NA	NA	NA
AXG87587.1|548432_548840_-	hypothetical protein	NA	NA	NA	NA	NA
AXG87588.1|548912_549599_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	1.3e-126
AXG87589.1|549734_550709_+	linear amide C-N hydrolase	NA	M1H001	Paramecium_bursaria_Chlorella_virus	31.6	2.1e-24
AXG87590.1|551152_551347_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87591.1|551359_551989_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	78.3	7.4e-100
AXG87592.1|552020_552206_-	hypothetical protein	NA	NA	NA	NA	NA
AXG87593.1|552235_552565_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AXG87594.1|552692_553631_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AXG87595.1|553656_554694_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AXG87596.1|556043_556316_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
AXG87597.1|556735_556996_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89997.1|557381_558200_+	PRD domain-containing protein	NA	NA	NA	NA	NA
AXG87598.1|558286_560158_+	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AXG87599.1|560179_561640_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
AXG87600.1|561741_562428_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	1.3e-126
AXG87601.1|562823_563777_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	30.1	4.6e-13
AXG87602.1|563777_565295_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXG87603.1|565436_565892_+	arginine repressor	NA	NA	NA	NA	NA
AXG87604.1|565925_567434_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
AXG87605.1|567457_568012_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXG87606.1|568136_568988_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXG87607.1|569123_569360_-	hypothetical protein	NA	NA	NA	NA	NA
AXG87608.1|569342_571529_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
AXG87609.1|571591_571933_+	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	2.5e-09
AXG87610.1|572088_573324_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AXG87611.1|573320_576032_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87612.1|576028_576973_+	HD domain-containing protein	NA	NA	NA	NA	NA
AXG87613.1|577012_578041_-	foldase	NA	NA	NA	NA	NA
AXG87614.1|578204_578549_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AXG87615.1|578549_578975_-	HIT family protein	NA	NA	NA	NA	NA
AXG87616.1|579190_579928_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-27
AXG87617.1|579929_581141_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
AXG87618.1|581269_582049_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AXG87619.1|582121_582766_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
>prophage 2
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	814075	821995	3065679	transposase	Planktothrix_phage(16.67%)	12	NA	NA
AXG87817.1|814075_815134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.0e-17
AXG87818.1|815133_816090_+	ATP-binding cassette domain-containing protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	23.9	3.2e-06
AXG87819.1|816130_817201_+|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	49.0	7.6e-89
AXG87820.1|817600_818122_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	3.0e-14
AXG87821.1|818235_818436_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
AXG87822.1|818496_818856_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
AXG87823.1|818901_819252_-	hypothetical protein	NA	NA	NA	NA	NA
AXG87824.1|819174_819438_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87825.1|819349_819709_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
AXG87826.1|819836_820271_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXG87827.1|820288_820804_+	GrpB family protein	NA	A0A2K5B2B6	Erysipelothrix_phage	48.8	7.7e-39
AXG87828.1|820819_821995_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	47.7	2.5e-85
>prophage 3
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	851186	901582	3065679	holin,head,protease,portal,plate,tRNA,capsid,integrase,tail,terminase	Enterococcus_phage(42.11%)	70	868026:868053	905355:905382
AXG87856.1|851186_851666_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AXG87857.1|851658_852180_+	N-acetyltransferase	NA	NA	NA	NA	NA
AXG87858.1|852349_852559_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87859.1|852632_853643_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AXG87860.1|853666_854674_-	galactose mutarotase	NA	NA	NA	NA	NA
AXG87861.1|854663_855332_-	beta-phosphoglucomutase	NA	A0A1D8KNV9	Synechococcus_phage	24.6	8.6e-06
AXG87862.1|855324_857619_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
AXG87863.1|857899_860068_+	PTS glucose/maltose transporter subunit IIBCA	NA	A0A2I7SAJ6	Vibrio_phage	37.2	7.3e-06
AXG87864.1|860133_860958_+	maltose 6'-phosphate phosphatase	NA	NA	NA	NA	NA
AXG87865.1|861017_861833_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	29.5	5.5e-23
AXG87866.1|861958_862921_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXG87867.1|862901_863201_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90008.1|863217_863508_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
AXG87868.1|863662_864343_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
AXG87869.1|864381_865023_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
AXG87870.1|865024_865174_-	peptidase	NA	NA	NA	NA	NA
AXG87871.1|865520_866297_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AXG87872.1|866439_866640_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87873.1|867068_867377_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AXG87874.1|867409_867754_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
AXG87875.1|867766_868054_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
868026:868053	attL	AAGTATCAGTTTATCCAGTAGCTAACTA	NA	NA	NA	NA
AXG87876.1|868141_869296_-|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	36.1	2.2e-65
AXG87877.1|869364_869934_-	DUF3221 domain-containing protein	NA	NA	NA	NA	NA
AXG87878.1|870114_870546_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
AXG87879.1|870560_870974_-	XRE family transcriptional regulator	NA	A0A0M4QX29	Bacillus_phage	53.2	3.6e-31
AXG87880.1|871206_871416_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG87881.1|871419_871704_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87882.1|871717_872440_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	64.0	1.9e-43
AXG87883.1|872479_872662_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AXG87884.1|872714_872909_+	hypothetical protein	NA	D2IZ57	Enterococcus_phage	90.6	1.9e-27
AXG87885.1|872899_873085_+	hypothetical protein	NA	D2IZ58	Enterococcus_phage	94.7	3.6e-23
AXG87886.1|873128_873452_+	hypothetical protein	NA	D2IYT5	Enterococcus_phage	86.9	7.7e-45
AXG87887.1|873451_873679_+	hypothetical protein	NA	D2IZX4	Enterococcus_phage	97.3	8.6e-35
AXG87888.1|873678_873780_+	hypothetical protein	NA	D2IYT7	Enterococcus_phage	100.0	3.2e-10
AXG87889.1|873776_874718_+	endonuclease	NA	D2IZK1	Enterococcus_phage	99.7	3.8e-177
AXG87890.1|874720_875611_+	recombinase RecT	NA	D2IYT9	Enterococcus_phage	100.0	1.3e-163
AXG87891.1|875624_876587_+	DUF4373 domain-containing protein	NA	D2IZR2	Enterococcus_phage	100.0	3.0e-169
AXG87892.1|876590_876893_+	hypothetical protein	NA	D2IZR3	Enterococcus_phage	99.0	1.6e-47
AXG87893.1|876893_877193_+	hypothetical protein	NA	D2IZY1	Enterococcus_phage	90.9	1.3e-43
AXG87894.1|877210_877636_+	RusA family crossover junction endodeoxyribonuclease	NA	D2IYU2	Enterococcus_phage	80.0	8.0e-58
AXG87895.1|877914_878175_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87896.1|878542_878959_+	autolysin	NA	D2IZL7	Enterococcus_phage	97.1	1.6e-66
AXG87897.1|881056_881287_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87898.1|881511_881838_+	HNH endonuclease	NA	C5J957	Streptococcus_phage	65.9	3.7e-31
AXG87899.1|882027_882387_+	hypothetical protein	NA	A0A0U4JV93	Exiguobacterium_phage	48.5	9.9e-17
AXG87900.1|882391_884179_+|terminase	terminase large subunit	terminase	Q9AZY8	Lactococcus_phage	64.2	2.6e-219
AXG87901.1|884198_885410_+|portal	phage portal protein	portal	Q0H263	Geobacillus_phage	59.6	5.9e-138
AXG87902.1|885406_885988_+|head,protease	HK97 family phage prohead protease	head,protease	Q0H262	Geobacillus_phage	67.9	7.6e-67
AXG87903.1|885990_887259_+|capsid	phage major capsid protein	capsid	Q0H261	Geobacillus_phage	54.8	1.3e-92
AXG87904.1|887261_887405_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87905.1|887431_887707_+	hypothetical protein	NA	Q9AZY3	Lactococcus_phage	44.4	9.6e-12
AXG87906.1|887699_888020_+|head,tail	phage head-tail adapter protein	head,tail	Q9AZY2	Lactococcus_phage	46.9	1.1e-19
AXG87907.1|888012_888393_+	hypothetical protein	NA	A0A1S5SFC4	Streptococcus_phage	51.8	5.9e-20
AXG87908.1|888395_888713_+	hypothetical protein	NA	Q9AZY0	Lactococcus_phage	56.2	1.8e-25
AXG87909.1|888729_889329_+|tail	phage tail protein	tail	Q9AZX9	Lactococcus_phage	68.6	1.8e-71
AXG87910.1|889331_889697_+	hypothetical protein	NA	Q9AZX8	Lactococcus_phage	67.2	5.5e-39
AXG87911.1|889701_889905_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87912.1|889920_892443_+|tail	phage tail tape measure protein	tail	Q9AZX7	Lactococcus_phage	32.3	3.6e-89
AXG87913.1|892447_893197_+|tail	phage tail protein	tail	Q9AZX6	Lactococcus_phage	60.6	1.1e-89
AXG87914.1|893193_895992_+	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	48.1	3.4e-197
AXG87915.1|896010_896892_+|plate	phage baseplate upper protein	plate	Q9AYV5	Lactococcus_phage	26.6	4.0e-11
AXG87916.1|896884_897481_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87917.1|897477_897765_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87918.1|897764_898292_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87919.1|898310_898685_+	hypothetical protein	NA	NA	NA	NA	NA
AXG87920.1|898684_898822_+	XkdX family protein	NA	NA	NA	NA	NA
AXG87921.1|898855_899077_+	hypothetical protein	NA	D2J019	Enterococcus_phage	95.9	3.9e-32
AXG87922.1|899069_899303_+|holin	phage holin	holin	D2J020	Enterococcus_phage	87.8	1.9e-29
AXG87923.1|899303_900545_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2MYF3	Enterococcus_phage	73.3	8.9e-174
AXG87924.1|901381_901582_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	80.3	1.6e-24
905355:905382	attR	AAGTATCAGTTTATCCAGTAGCTAACTA	NA	NA	NA	NA
>prophage 4
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	1219153	1236834	3065679	holin,tail	Enterococcus_phage(42.86%)	20	NA	NA
AXG88222.1|1219153_1221550_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.8	2.9e-19
AXG88223.1|1221574_1221925_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AXG88224.1|1222207_1222681_-	toxin	NA	A0A097BY56	Enterococcus_phage	71.2	1.1e-60
AXG88225.1|1222727_1223210_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.7	2.6e-20
AXG88226.1|1223378_1223561_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88227.1|1223591_1224362_+	DnaD domain protein	NA	A0A0K0MX39	Streptococcus_phage	57.0	2.5e-33
AXG88228.1|1224380_1225223_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	31.0	5.7e-31
AXG88229.1|1225225_1225318_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88230.1|1225310_1225682_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88231.1|1225701_1226109_+	transcriptional regulator	NA	NA	NA	NA	NA
AXG88232.1|1226354_1226747_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88233.1|1226759_1227272_+|tail	phage major tail protein, TP901-1 family	tail	W6LP72	Streptococcus_phage	49.4	5.2e-35
AXG88234.1|1227304_1227664_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	32.2	7.6e-09
AXG88235.1|1227681_1228050_+	hypothetical protein	NA	Q38180	Lactococcus_phage	32.0	3.3e-07
AXG88236.1|1228039_1230973_+	hypothetical protein	NA	A0A1U9WR55	Streptococcus_virus	25.0	2.5e-09
AXG88237.1|1230974_1231901_+|tail	phage tail family protein	tail	C9E2K5	Enterococcus_phage	78.6	1.2e-146
AXG88238.1|1231913_1233371_+	hypothetical protein	NA	C9E2K6	Enterococcus_phage	47.7	4.2e-175
AXG88239.1|1233403_1235173_+	hypothetical protein	NA	A0A097BYA8	Enterococcus_phage	71.8	9.8e-142
AXG88240.1|1235196_1235592_+|holin	holin	holin	F0PIJ6	Enterococcus_phage	48.9	2.8e-33
AXG88241.1|1235736_1236834_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	44.6	4.0e-77
>prophage 5
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	1693876	1739449	3065679	protease,transposase,integrase	Streptococcus_phage(53.33%)	44	1694077:1694092	1716917:1716932
AXG88659.1|1693876_1694731_-|protease	serine protease	protease	NA	NA	NA	NA
1694077:1694092	attL	AAAATAGTAATGGATT	NA	NA	NA	NA
AXG88660.1|1694779_1696312_-	peptidase M4 family protein	NA	NA	NA	NA	NA
AXG88661.1|1696546_1697617_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
AXG88662.1|1697546_1698074_-	HD domain-containing protein	NA	NA	NA	NA	NA
AXG88663.1|1698291_1699197_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
AXG88664.1|1699370_1699787_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88665.1|1700398_1700581_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88666.1|1700701_1700803_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88667.1|1700944_1702123_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	30.3	2.0e-29
AXG88668.1|1702225_1702537_-	DNA-binding protein	NA	NA	NA	NA	NA
AXG88669.1|1702885_1703131_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXG88670.1|1703124_1703526_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
AXG88671.1|1706090_1707353_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
AXG88672.1|1707490_1707715_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88673.1|1707711_1707876_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88674.1|1707969_1709262_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	40.4	3.9e-31
AXG88675.1|1709535_1709796_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88676.1|1710400_1711562_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.0e-79
AXG90035.1|1711634_1711841_+|transposase	transposase	transposase	U5P429	Shigella_phage	53.3	2.0e-06
AXG88677.1|1711844_1711958_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88678.1|1712110_1712506_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AXG88679.1|1712518_1713367_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AXG88680.1|1713381_1714209_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	M4QNT1	Ostreococcus_lucimarinus_virus	38.0	5.4e-50
AXG88681.1|1714220_1715066_-	DUF2520 domain-containing protein	NA	NA	NA	NA	NA
AXG88682.1|1716813_1718133_-	sensor histidine kinase	NA	NA	NA	NA	NA
1716917:1716932	attR	AATCCATTACTATTTT	NA	NA	NA	NA
AXG88683.1|1718129_1718783_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
AXG88684.1|1718844_1718985_-	RNA helicase	NA	NA	NA	NA	NA
AXG88685.1|1720353_1721730_-	ABC transporter permease	NA	NA	NA	NA	NA
AXG88686.1|1721729_1722386_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
AXG88687.1|1724499_1724910_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88688.1|1725154_1725442_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88689.1|1725442_1725670_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
AXG88690.1|1725740_1726931_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
AXG88691.1|1727965_1728970_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	66.3	1.4e-121
AXG88692.1|1728966_1731090_-	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	58.7	2.4e-174
AXG88693.1|1731094_1733542_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
AXG90036.1|1733528_1733918_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	66.7	2.5e-42
AXG88694.1|1733981_1734710_+	hypothetical protein	NA	NA	NA	NA	NA
AXG88695.1|1734716_1735544_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88696.1|1735617_1736121_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.2	3.1e-56
AXG88697.1|1736133_1736355_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
AXG88698.1|1736751_1738002_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	62.1	6.1e-114
AXG88699.1|1738133_1738268_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AXG88700.1|1738264_1739449_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.1	1.0e-142
>prophage 6
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	1870716	1882056	3065679	protease,holin	Enterococcus_phage(50.0%)	11	NA	NA
AXG88828.1|1870716_1871787_-	methionine import ATP-binding protein MetN 1	NA	G9BWD6	Planktothrix_phage	34.7	6.8e-29
AXG88829.1|1873144_1873393_+	hypothetical protein	NA	A0A097BYB1	Enterococcus_phage	91.5	6.1e-34
AXG88830.1|1873411_1874380_-|protease	CAAX protease	protease	A0A059NT88	Lactococcus_phage	43.5	1.3e-79
AXG90042.1|1875190_1876177_-	endolysin	NA	F0PIJ7	Enterococcus_phage	67.6	4.7e-85
AXG88831.1|1876163_1876442_-|holin	holin	holin	NA	NA	NA	NA
AXG88832.1|1876441_1876696_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88833.1|1876708_1877128_-	XkdX family protein	NA	F0PIJ5	Enterococcus_phage	85.4	1.1e-56
AXG88834.1|1877115_1878303_-	collagen-like protein	NA	F0PIJ4	Enterococcus_phage	65.4	8.8e-62
AXG88835.1|1878289_1878778_-	hypothetical protein	NA	A0A1W6JI16	Lactococcus_phage	46.0	8.4e-35
AXG90043.1|1878790_1879480_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88836.1|1879479_1882056_-	endolysin	NA	A0A1B1IM47	Lactococcus_phage	46.6	1.3e-30
>prophage 7
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	1900326	1913541	3065679		Enterococcus_phage(58.82%)	27	NA	NA
AXG88854.1|1900326_1900746_-	hypothetical protein	NA	A0A2H4J1L3	uncultured_Caudovirales_phage	51.0	4.7e-18
AXG88855.1|1900735_1901932_-	DNA modification methylase	NA	Q708N6	Streptococcus_phage	51.1	1.8e-110
AXG88856.1|1902339_1902765_-	ArpU family transcriptional regulator	NA	D2IYV6	Enterococcus_phage	42.3	9.9e-24
AXG88857.1|1902910_1903036_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88858.1|1903063_1903264_-	hypothetical protein	NA	D2IYV2	Enterococcus_phage	89.4	2.4e-28
AXG88859.1|1903264_1903750_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	98.1	1.7e-88
AXG88860.1|1903746_1904271_-	DUF1642 domain-containing protein	NA	D2IZZ0	Enterococcus_phage	51.1	2.4e-35
AXG88861.1|1904252_1904609_-	hypothetical protein	NA	F0PIH7	Enterococcus_phage	78.4	5.3e-47
AXG88862.1|1904605_1904872_-	hypothetical protein	NA	A0A059T7S7	Listeria_phage	48.3	4.4e-14
AXG90045.1|1904964_1905192_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88863.1|1905242_1905422_-	hypothetical protein	NA	D2IYU5	Enterococcus_phage	100.0	1.1e-13
AXG88864.1|1905478_1906114_-	DUF2187 domain-containing protein	NA	D2IZY3	Enterococcus_phage	89.2	2.3e-69
AXG88865.1|1906127_1906460_-	hypothetical protein	NA	A0A0S2MYB8	Enterococcus_phage	55.7	8.0e-21
AXG88866.1|1906456_1906882_-	RusA family crossover junction endodeoxyribonuclease	NA	D2IYU2	Enterococcus_phage	80.4	1.2e-58
AXG88867.1|1906890_1907760_-	AAA family ATPase	NA	U5PWH5	Bacillus_phage	29.1	3.6e-20
AXG88868.1|1907773_1908640_-	DUF4373 domain-containing protein	NA	D2IZY0	Enterococcus_phage	46.3	2.8e-49
AXG88869.1|1908653_1909466_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	50.8	1.9e-63
AXG88870.1|1909431_1910355_-	recombinase RecT	NA	A0A1S5S8V5	Streptococcus_phage	53.6	1.2e-66
AXG88871.1|1910344_1910677_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88872.1|1910707_1910998_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88873.1|1911082_1911409_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88874.1|1911409_1911619_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88875.1|1911637_1911748_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88876.1|1911761_1912013_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG88877.1|1912027_1912555_-	hypothetical protein	NA	NA	NA	NA	NA
AXG88878.1|1912825_1913011_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG88879.1|1913163_1913541_+	XRE family transcriptional regulator	NA	A0A2P1JU09	Anoxybacillus_phage	37.0	1.2e-12
>prophage 8
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	2064959	2075970	3065679		Streptococcus_phage(100.0%)	12	NA	NA
AXG89007.1|2064959_2065982_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	65.4	3.6e-120
AXG89008.1|2065978_2068093_-	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	60.5	7.0e-179
AXG89009.1|2068098_2070546_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	75.0	0.0e+00
AXG89010.1|2070532_2070922_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	1.8e-43
AXG89011.1|2070998_2071613_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89012.1|2071628_2072201_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89013.1|2072233_2072734_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	56.1	6.8e-48
AXG89014.1|2072746_2072968_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
AXG89015.1|2072972_2073110_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
AXG89016.1|2073106_2074291_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.1	8.0e-140
AXG89017.1|2074547_2074802_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89018.1|2074827_2075970_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	59.7	1.4e-120
>prophage 9
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	2390432	2465517	3065679	holin,head,protease,portal,transposase,lysis,capsid,tRNA,tail,terminase	Enterococcus_phage(31.71%)	87	NA	NA
AXG89312.1|2390432_2390939_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AXG89313.1|2391250_2392096_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
AXG89314.1|2392014_2392233_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89315.1|2392225_2392855_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AXG89316.1|2392972_2394334_-	magnesium transporter	NA	NA	NA	NA	NA
AXG89317.1|2394364_2395258_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AXG89318.1|2395265_2396063_-	NAD(+) kinase	NA	NA	NA	NA	NA
AXG89319.1|2396075_2396780_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
AXG89320.1|2396946_2397525_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
AXG89321.1|2397588_2398248_+	DsbA family protein	NA	NA	NA	NA	NA
AXG90064.1|2398530_2399226_-	XRE family transcriptional regulator	NA	A0A0A7AQV8	Bacillus_phage	42.3	7.6e-05
AXG89322.1|2399440_2401252_-	oligoendopeptidase F	NA	NA	NA	NA	NA
AXG89323.1|2401299_2402484_-	competence protein ComA	NA	NA	NA	NA	NA
AXG89324.1|2402572_2403235_-	adapter protein MecA	NA	NA	NA	NA	NA
AXG89325.1|2403577_2403976_-	transcriptional regulator Spx	NA	NA	NA	NA	NA
AXG89326.1|2404335_2405346_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AXG89327.1|2405388_2406726_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.5	4.0e-47
AXG89328.1|2406834_2407083_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	97.6	2.9e-36
AXG89329.1|2407238_2407907_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89330.1|2407911_2408289_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89331.1|2408272_2409121_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	38.4	2.6e-31
AXG89332.1|2409303_2410410_-	N-acetylmuramoyl-L-alanine amidase	NA	V5URN7	Enterococcus_phage	47.7	1.2e-84
AXG89333.1|2410463_2410862_-|holin	holin	holin	F0PIJ6	Enterococcus_phage	54.2	1.6e-36
AXG89334.1|2410911_2411715_-	hypothetical protein	NA	D2IYX9	Enterococcus_phage	83.1	5.9e-118
AXG89335.1|2411726_2412782_-	structural protein	NA	D2J073	Enterococcus_phage	37.2	6.9e-50
AXG89336.1|2412792_2413917_-	hypothetical protein	NA	Q77MU2	Lactococcus_phage	45.3	2.0e-87
AXG89337.1|2413919_2414819_-|tail	phage tail family protein	tail	D2J071	Enterococcus_phage	37.4	2.9e-49
AXG89338.1|2414818_2419570_-|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	43.0	7.2e-14
AXG89339.1|2419791_2420139_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89340.1|2420195_2420669_-|tail	phage tail protein	tail	A0A1D6Z291	Staphylococcus_phage	44.4	7.9e-22
AXG89341.1|2420742_2421336_-|tail	phage tail protein	tail	A0A060AKE9	Staphylococcus_phage	35.1	2.6e-22
AXG89342.1|2421368_2421764_-	hypothetical protein	NA	A8ATA3	Listeria_phage	45.0	9.8e-18
AXG89343.1|2421760_2422153_-	hypothetical protein	NA	A0A1S5SF89	Streptococcus_phage	38.5	1.3e-09
AXG89344.1|2422149_2422524_-|head,tail	phage head-tail adapter protein	head,tail	A8ATA1	Listeria_phage	52.1	1.5e-28
AXG89345.1|2422510_2422816_-	hypothetical protein	NA	A0A0U4K528	Bacillus_phage	47.5	2.2e-09
AXG89346.1|2422893_2424039_-|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	56.5	2.1e-116
AXG89347.1|2424065_2424839_-|protease	Clp protease ClpP	protease	A0A2P0ZLE3	Lactobacillus_phage	50.4	3.4e-54
AXG89348.1|2424810_2425986_-|portal	phage portal protein	portal	A0A068A211	Staphylococcus_phage	41.3	6.0e-79
AXG89349.1|2426018_2426201_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89350.1|2426395_2428036_-|terminase	terminase large subunit	terminase	A0A1S5SF58	Streptococcus_phage	58.9	3.7e-183
AXG89351.1|2428032_2428386_-	hypothetical protein	NA	A0A2H4JAH7	uncultured_Caudovirales_phage	67.8	2.7e-35
AXG89352.1|2428556_2428808_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89353.1|2428804_2429530_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89354.1|2429520_2429832_-	HNH endonuclease	NA	A0A1S5SFB3	Streptococcus_phage	63.1	2.7e-31
AXG89355.1|2429824_2430139_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89356.1|2430131_2430320_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89357.1|2430813_2431452_-	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	29.9	6.5e-11
AXG89358.1|2431510_2431822_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89359.1|2431842_2432172_-	PcfU	NA	D2IYU7	Enterococcus_phage	97.2	2.2e-55
AXG89360.1|2432180_2432387_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	96.8	7.4e-25
AXG89361.1|2432396_2432789_-	hypothetical protein	NA	A0A0S2MYE6	Enterococcus_phage	95.4	1.8e-67
AXG89362.1|2432986_2433286_-	hypothetical protein	NA	D2IZY1	Enterococcus_phage	80.8	5.5e-37
AXG89363.1|2433306_2433783_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89364.1|2433757_2434012_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89365.1|2434014_2434527_-	recombination protein U	NA	A0A2K9V2V4	Faecalibacterium_phage	42.8	1.8e-24
AXG89366.1|2434516_2434837_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89367.1|2434833_2435649_-	hypothetical protein	NA	Q0SPI6	Clostridium_phage	34.2	6.3e-27
AXG89368.1|2435875_2436628_-	hypothetical protein	NA	A0A1S5S8N0	Streptococcus_phage	43.6	5.1e-47
AXG89369.1|2436647_2437106_-	hypothetical protein	NA	A0A097BY30	Enterococcus_phage	45.4	3.7e-24
AXG90065.1|2437162_2437441_-	hypothetical protein	NA	A0A0A7S062	Clostridium_phage	52.2	1.3e-13
AXG89370.1|2437434_2437662_-	hypothetical protein	NA	D2IZX4	Enterococcus_phage	55.4	3.2e-13
AXG89371.1|2437658_2437973_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89372.1|2438556_2439105_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89373.1|2439473_2440064_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89374.1|2440422_2440659_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG89375.1|2440797_2441271_+	XRE family transcriptional regulator	NA	A0A1S5S8T5	Streptococcus_phage	49.2	1.6e-19
AXG89376.1|2441288_2441753_+	toxin	NA	R4IBK9	Listeria_phage	39.6	8.6e-13
AXG89377.1|2441841_2442417_+	hypothetical protein	NA	A0A097BY58	Enterococcus_phage	38.8	3.9e-07
AXG89378.1|2442479_2443892_+	recombinase family protein	NA	D7RWL2	Brochothrix_phage	43.7	1.7e-99
AXG89379.1|2443875_2444295_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AXG89380.1|2444622_2445336_+	HAD family hydrolase	NA	NA	NA	NA	NA
AXG89381.1|2445406_2446808_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	42.8	5.4e-34
AXG89382.1|2446889_2447915_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA	NA
AXG89383.1|2447989_2448766_-	WxL domain-containing protein	NA	NA	NA	NA	NA
AXG89384.1|2448805_2449588_-	WxL domain-containing protein	NA	NA	NA	NA	NA
AXG89385.1|2449589_2449958_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
AXG89386.1|2449961_2452133_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89387.1|2452322_2453246_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89388.1|2453295_2456493_-	Snf2 family helicase	NA	A0A160DDK8	Gordonia_phage	26.8	4.5e-36
AXG89389.1|2456512_2459650_-	SMC family ATPase	NA	NA	NA	NA	NA
AXG89390.1|2459654_2460791_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AXG89391.1|2460974_2461601_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AXG89392.1|2462512_2462779_+	GIY-YIG nuclease family protein	NA	A0A1V0SLS6	Klosneuvirus	39.1	4.9e-05
AXG89393.1|2462845_2463541_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AXG89394.1|2463556_2463853_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89395.1|2463849_2464446_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AXG89396.1|2464836_2465517_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
>prophage 10
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	2515322	2525062	3065679		Streptococcus_phage(57.14%)	11	NA	NA
AXG89446.1|2515322_2517506_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.8	3.1e-286
AXG89447.1|2517538_2518135_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.4	6.0e-51
AXG89448.1|2518179_2519298_-	DNA polymerase IV	NA	NA	NA	NA	NA
AXG89449.1|2519423_2520182_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AXG89450.1|2520165_2520828_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.6	5.1e-19
AXG89451.1|2520842_2521715_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	57.2	1.1e-80
AXG89452.1|2521826_2522174_-	initiation-control protein YabA	NA	M1PFV3	Streptococcus_phage	36.7	8.1e-16
AXG89453.1|2522166_2523006_-	signal peptidase	NA	NA	NA	NA	NA
AXG89454.1|2523122_2524073_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	1.4e-33
AXG89455.1|2524074_2524404_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89456.1|2524423_2525062_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.1e-54
>prophage 11
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	2546336	2594273	3065679	holin,head,protease,portal,capsid,tRNA,tail,integrase,terminase	Enterococcus_phage(41.03%)	64	2558386:2558401	2594909:2594924
AXG89481.1|2546336_2547047_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
AXG89482.1|2547057_2547600_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AXG89483.1|2547686_2548457_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
AXG89484.1|2548446_2548653_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89485.1|2548622_2549198_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
AXG89486.1|2549303_2550854_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89487.1|2550874_2551939_+	DUF4950 domain-containing protein	NA	C9E2L5	Enterococcus_phage	51.5	5.7e-20
AXG89488.1|2552198_2553263_-	FUSC family protein	NA	NA	NA	NA	NA
AXG90068.1|2553518_2553716_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89489.1|2554273_2554723_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89490.1|2554722_2555004_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89491.1|2555000_2555582_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89492.1|2555987_2557289_-	LysM peptidoglycan-binding domain-containing protein	NA	D2J077	Enterococcus_phage	93.5	2.5e-227
AXG89493.1|2557289_2557679_-|holin	holin	holin	A0A097QQ04	Enterococcus_phage	65.1	2.9e-38
AXG89494.1|2557718_2560208_-	SGNH/GDSL hydrolase family protein	NA	A0A0S2SXG8	Bacillus_phage	22.1	3.8e-06
2558386:2558401	attL	AATTTTTTATTGACAA	NA	NA	NA	NA
AXG89495.1|2560152_2562990_-	CHAP domain-containing protein	NA	D7RWE0	Brochothrix_phage	43.2	1.9e-86
AXG89496.1|2562986_2563691_-|tail	phage tail protein	tail	NA	NA	NA	NA
AXG89497.1|2563693_2565991_-|tail	phage tail tape measure protein	tail	V5UPR9	Enterococcus_phage	56.0	3.1e-79
AXG89498.1|2566182_2566638_-	hypothetical protein	NA	A0A2H4J956	uncultured_Caudovirales_phage	37.4	3.4e-14
AXG89499.1|2566637_2567282_-|tail	phage tail protein	tail	A0A2H4JGN2	uncultured_Caudovirales_phage	34.1	9.1e-29
AXG89500.1|2567278_2567641_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89501.1|2567630_2567969_-	hypothetical protein	NA	A0A1B0T6B7	Bacillus_phage	52.3	1.9e-25
AXG89502.1|2567958_2568285_-|head,tail	phage head-tail joining protein	head,tail	A0A0N7IRA3	Lactobacillus_phage	52.4	1.3e-20
AXG89503.1|2568262_2568544_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1B1P7M9	Bacillus_phage	64.3	7.2e-23
AXG89504.1|2568545_2569910_-|capsid	phage major capsid protein	capsid	A0A1B2APY9	Phage_Wrath	67.6	2.2e-125
AXG89505.1|2569922_2570495_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	62.4	1.1e-62
AXG89506.1|2570466_2571693_-|portal	phage portal protein	portal	A0A2H4J9C7	uncultured_Caudovirales_phage	65.8	4.6e-146
AXG89507.1|2571711_2573439_-|terminase	terminase large subunit	terminase	A0A2H4JDG5	uncultured_Caudovirales_phage	70.4	3.5e-253
AXG89508.1|2573435_2573888_-|terminase	terminase small subunit	terminase	A0A2H4JFK0	uncultured_Caudovirales_phage	68.5	8.0e-48
AXG89509.1|2574135_2574513_-	HNH endonuclease	NA	A0A1B0T6C5	Bacillus_phage	69.1	1.5e-44
AXG89510.1|2574512_2574920_-	hypothetical protein	NA	A0A1B1P7N8	Bacillus_phage	38.6	2.9e-12
AXG89511.1|2575442_2575910_-	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	27.8	2.9e-08
AXG89512.1|2576109_2576301_+	hypothetical protein	NA	D2IYV5	Enterococcus_phage	100.0	6.6e-28
AXG89513.1|2576297_2576501_-	hypothetical protein	NA	D2IZL5	Enterococcus_phage	92.5	8.8e-31
AXG89514.1|2576662_2577190_-	DUF1642 domain-containing protein	NA	D2IZL3	Enterococcus_phage	55.3	1.8e-43
AXG89515.1|2577203_2577482_-	hypothetical protein	NA	A0A0S2MYC7	Enterococcus_phage	94.6	6.9e-42
AXG89516.1|2577769_2577886_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89517.1|2577869_2578082_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89518.1|2578041_2578227_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89519.1|2578426_2578633_-	hypothetical protein	NA	A0A1B1V001	Enterococcus_phage	95.2	4.8e-24
AXG89520.1|2578648_2579254_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89521.1|2579302_2579683_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89522.1|2579683_2580154_-	DUF1064 domain-containing protein	NA	A0A1I9KKZ1	Lactobacillus_phage	46.6	6.4e-32
AXG89523.1|2580302_2580572_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89524.1|2580710_2581562_-	ATP-binding protein	NA	U5PVD6	Bacillus_phage	33.3	6.4e-22
AXG89525.1|2581573_2582353_-	DnaD domain protein	NA	Q6J1V6	Lactobacillus_phage	58.5	7.6e-38
AXG90069.1|2582367_2583171_-	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	49.8	9.5e-60
AXG89526.1|2583145_2584156_-	RecT protein	NA	A0A1X9I5N6	Streptococcus_phage	62.6	9.7e-78
AXG89527.1|2584152_2584254_-	hypothetical protein	NA	D2IZX5	Enterococcus_phage	90.3	1.7e-06
AXG89528.1|2584256_2584481_-	hypothetical protein	NA	D2IZX4	Enterococcus_phage	68.5	3.7e-22
AXG89529.1|2584477_2584777_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89530.1|2584843_2585023_-	hypothetical protein	NA	A0A0S2MY96	Enterococcus_phage	77.2	2.6e-18
AXG89531.1|2585057_2585327_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89532.1|2585402_2585717_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89533.1|2585697_2585826_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89534.1|2585841_2586018_-	XRE family transcriptional regulator	NA	D2IZW2	Enterococcus_phage	65.5	1.3e-14
AXG89535.1|2586105_2586384_+	hypothetical protein	NA	D2IZW1	Enterococcus_phage	87.0	1.2e-38
AXG89536.1|2586785_2587172_+	XRE family transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	97.5	2.3e-59
AXG89537.1|2587190_2587535_+	ImmA/IrrE family metallo-endopeptidase	NA	D2IZV8	Enterococcus_phage	70.2	8.0e-40
AXG89538.1|2587593_2588322_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	50.8	1.3e-15
AXG89539.1|2588476_2589658_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	31.8	1.9e-48
AXG89540.1|2589760_2589910_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXG89541.1|2590035_2592171_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
AXG89542.1|2592335_2594273_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.3	3.1e-112
2594909:2594924	attR	TTGTCAATAAAAAATT	NA	NA	NA	NA
>prophage 12
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	2907550	2947637	3065679	holin,tRNA	Enterobacteria_phage(14.29%)	45	NA	NA
AXG89825.1|2907550_2908234_-|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
AXG89826.1|2908230_2908650_-|holin	antiholin-like protein LrgA	holin	NA	NA	NA	NA
AXG89827.1|2908801_2909530_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXG89828.1|2909510_2911280_-	sensor protein LytS	NA	Q9EYF3	Enterobacteria_phage	28.5	3.2e-60
AXG89829.1|2911371_2912190_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89830.1|2912202_2912874_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
AXG89831.1|2912870_2913593_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.7	9.2e-22
AXG90081.1|2913954_2914347_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AXG89832.1|2914553_2914823_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
AXG89833.1|2914933_2915083_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AXG89834.1|2915098_2916073_+	GTP-binding protein	NA	NA	NA	NA	NA
AXG89835.1|2916088_2916229_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89836.1|2916249_2917785_+	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
AXG89837.1|2917842_2918817_-|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
AXG89838.1|2919005_2919776_-	ABC transporter permease	NA	NA	NA	NA	NA
AXG89839.1|2919768_2920704_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.4	2.4e-22
AXG89840.1|2920961_2921381_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AXG89841.1|2921393_2921885_+	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
AXG89842.1|2921901_2922717_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
AXG89843.1|2922713_2923541_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
AXG89844.1|2923688_2926208_+	PRD domain-containing protein	NA	NA	NA	NA	NA
AXG89845.1|2926354_2926915_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89846.1|2927093_2927486_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AXG89847.1|2927499_2927943_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AXG89848.1|2928004_2928112_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89849.1|2928164_2928632_-	DNA starvation/stationary phase protection protein	NA	C1KFH1	Lactobacillus_virus	25.9	1.0e-05
AXG89850.1|2928759_2929479_-	DUF5105 domain-containing protein	NA	NA	NA	NA	NA
AXG89851.1|2929562_2931083_-	gluconate kinase	NA	NA	NA	NA	NA
AXG89852.1|2931191_2931884_+	prepilin peptidase	NA	NA	NA	NA	NA
AXG89853.1|2931933_2935587_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.8	1.4e-65
AXG89854.1|2935753_2939377_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.5	2.0e-48
AXG89855.1|2939385_2939565_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89856.1|2939738_2940080_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SAB3	Streptococcus_phage	42.5	5.5e-17
AXG89857.1|2940079_2940310_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
AXG89858.1|2940716_2940932_-	DNA-binding protein	NA	NA	NA	NA	NA
AXG89859.1|2941070_2942063_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AXG89860.1|2942129_2942762_-	RloB domain-containing protein	NA	NA	NA	NA	NA
AXG89861.1|2942770_2944066_-	abortive infection protein	NA	NA	NA	NA	NA
AXG89862.1|2944091_2944226_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89863.1|2944400_2944493_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89864.1|2944527_2946144_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXG89865.1|2946498_2946621_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AXG89866.1|2946806_2947004_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AXG90082.1|2947122_2947263_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AXG89867.1|2947493_2947637_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 13
CP031027	Enterococcus faecalis strain TY1 chromosome, complete genome	3065679	3031188	3048726	3065679	integrase	Streptococcus_phage(100.0%)	22	3026165:3026179	3054976:3054990
3026165:3026179	attL	TTTCTTTTTCTGTTG	NA	NA	NA	NA
AXG89928.1|3031188_3031503_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
AXG89929.1|3031518_3031905_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AXG89930.1|3031933_3033319_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AXG89931.1|3033321_3033474_+	conjugal transfer protein	NA	NA	NA	NA	NA
AXG89932.1|3033496_3034702_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AXG89933.1|3034744_3034966_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AXG89934.1|3035082_3035580_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AXG89935.1|3035554_3036061_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AXG89936.1|3036044_3038492_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AXG89937.1|3038494_3040672_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
AXG89938.1|3040668_3041670_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AXG89939.1|3041666_3042599_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AXG89940.1|3042873_3042960_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AXG89941.1|3042975_3044895_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
AXG89942.1|3044995_3045181_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AXG89943.1|3045240_3045594_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AXG90085.1|3045798_3045870_+	hypothetical protein	NA	NA	NA	NA	NA
AXG89944.1|3046098_3046521_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AXG89945.1|3046517_3046763_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	93.8	2.7e-34
AXG89946.1|3046988_3047240_-	hypothetical protein	NA	NA	NA	NA	NA
AXG89947.1|3047223_3047427_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AXG89948.1|3047508_3048726_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
3054976:3054990	attR	TTTCTTTTTCTGTTG	NA	NA	NA	NA
>prophage 1
CP031028	Enterococcus faecalis strain TY1 plasmid pDEF-1, complete sequence	75758	0	29252	75758	protease,transposase	Streptococcus_phage(85.71%)	42	NA	NA
AXG90088.1|284_368_+	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
AXG90089.1|492_1230_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
AXG90090.1|1234_1366_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
AXG90091.1|2523_2769_+	DUF1413 domain-containing protein	NA	NA	NA	NA	NA
AXG90092.1|2871_3741_+	nucleotidyltransferase domain-containing protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
AXG90093.1|3721_4456_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AXG90094.1|4488_5397_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
AXG90095.1|5393_5936_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
AXG90096.1|6028_6823_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
AXG90097.1|7455_7671_+	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	98.6	3.4e-33
AXG90098.1|7968_8865_+	hydrolase	NA	A0A1X9I765	Streptococcus_phage	97.2	9.0e-152
AXG90099.1|8963_9173_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	1.6e-30
AXG90100.1|9189_9462_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	96.7	5.4e-07
AXG90101.1|9463_9859_+	zeta-toxin	NA	NA	NA	NA	NA
AXG90102.1|9880_10567_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AXG90103.1|10600_10852_-	hypothetical protein	NA	NA	NA	NA	NA
AXG90104.1|10894_11563_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXG90105.1|11693_12707_-	replication protein RepA	NA	NA	NA	NA	NA
AXG90106.1|12966_13323_-	hypothetical protein	NA	NA	NA	NA	NA
AXG90107.1|13315_14098_-	ParA family protein	NA	H7BUL8	unidentified_phage	32.8	3.8e-21
AXG90108.1|14351_14642_-	type III secretion system protein PrgN	NA	NA	NA	NA	NA
AXG90109.1|14665_15352_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
AXG90110.1|15384_16038_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	96.2	2.4e-114
AXG90111.1|16408_16495_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AXG90112.1|16586_16802_-	excinuclease ABC subunit C	NA	NA	NA	NA	NA
AXG90113.1|17223_17877_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	96.2	2.4e-114
AXG90114.1|17909_18596_+|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
AXG90115.1|18792_19623_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
AXG90116.1|19622_20372_-	ABC transporter permease	NA	NA	NA	NA	NA
AXG90117.1|20364_21282_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.2	4.6e-42
AXG90118.1|21464_22079_-	XRE family transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	5.5e-07
AXG90119.1|22068_22266_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AXG90120.1|22431_22596_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXG90121.1|22628_23315_+|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
AXG90122.1|23857_23944_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
AXG90123.1|24128_24440_-	hypothetical protein	NA	NA	NA	NA	NA
AXG90124.1|24462_24663_-	hypothetical protein	NA	NA	NA	NA	NA
AXG90125.1|24751_26512_-	plasmid recombination protein	NA	NA	NA	NA	NA
AXG90126.1|26531_26723_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90127.1|27208_27505_-	hypothetical protein	NA	NA	NA	NA	NA
AXG90128.1|27631_28354_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
AXG90129.1|28565_29252_+|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
>prophage 2
CP031028	Enterococcus faecalis strain TY1 plasmid pDEF-1, complete sequence	75758	32885	33344	75758		Lactococcus_phage(100.0%)	1	NA	NA
AXG90136.1|32885_33344_+	single-stranded DNA-binding protein	NA	Q9B008	Lactococcus_phage	59.2	6.6e-42
>prophage 3
CP031028	Enterococcus faecalis strain TY1 plasmid pDEF-1, complete sequence	75758	46412	54804	75758		Bacillus_phage(40.0%)	13	NA	NA
AXG90144.1|46412_46829_+	single-stranded DNA-binding protein	NA	A0A1S5S8L6	Streptococcus_phage	50.5	9.1e-22
AXG90145.1|46852_47437_+	thermonuclease	NA	O64020	Bacillus_phage	54.7	2.8e-37
AXG90146.1|47547_47814_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
AXG90147.1|47806_48082_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
AXG90148.1|48884_49070_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90149.1|49091_49238_+	PcfM protein	NA	NA	NA	NA	NA
AXG90150.1|49468_50248_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90151.1|50247_51507_+	hypothetical protein	NA	A8ATM0	Listeria_phage	40.5	2.4e-89
AXG90152.1|51931_52117_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90153.1|52156_52885_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	54.1	2.9e-63
AXG90179.1|53095_53506_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90154.1|53591_53930_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90155.1|54144_54804_+	DUF2786 domain-containing protein	NA	A0A172JHR5	Bacillus_phage	31.7	8.4e-14
>prophage 4
CP031028	Enterococcus faecalis strain TY1 plasmid pDEF-1, complete sequence	75758	59656	65581	75758	transposase	Pseudomonas_phage(33.33%)	5	NA	NA
AXG90162.1|59656_60802_+	glycosyltransferase family 2 protein	NA	S5WBE2	Pseudomonas_phage	37.5	1.5e-05
AXG90163.1|60893_62957_+	ATP-binding cassette domain-containing protein	NA	A0A2H4UU96	Bodo_saltans_virus	24.7	2.5e-11
AXG90164.1|62958_63369_+	thioredoxin	NA	NA	NA	NA	NA
AXG90165.1|63370_63895_+	thioredoxin	NA	NA	NA	NA	NA
AXG90166.1|64900_65581_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
>prophage 5
CP031028	Enterococcus faecalis strain TY1 plasmid pDEF-1, complete sequence	75758	70142	75063	75758	transposase	Enterobacteria_phage(33.33%)	5	NA	NA
AXG90171.1|70142_70760_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
AXG90172.1|70800_71100_+	hypothetical protein	NA	NA	NA	NA	NA
AXG90173.1|71133_71301_+	transcriptional regulator	NA	NA	NA	NA	NA
AXG90174.1|71345_71951_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	33.2	1.2e-19
AXG90175.1|72075_75063_+|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	38.3	7.3e-206
>prophage 1
CP031029	Enterococcus faecalis strain TY1 plasmid pDEF-2, complete sequence	58791	51090	58426	58791	transposase	Streptococcus_phage(66.67%)	7	NA	NA
AXG90227.1|51090_51777_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AXG90228.1|51810_52155_-	hypothetical protein	NA	NA	NA	NA	NA
AXG90229.1|52554_53241_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
AXG90238.1|54258_54651_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
AXG90230.1|54651_56091_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
AXG90231.1|56220_57393_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AXG90232.1|57739_58426_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
