The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	693012	700832	2768346		Hokovirus(16.67%)	10	NA	NA
AXG02853.1|693012_694068_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AXG02854.1|694067_694754_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXG02855.1|694728_695202_-	DoxX family protein	NA	NA	NA	NA	NA
AXG02856.1|695543_695984_-	hypothetical protein	NA	NA	NA	NA	NA
AXG02857.1|696263_696848_-	hypothetical protein	NA	NA	NA	NA	NA
AXG02858.1|696946_697660_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AXG02859.1|697663_698083_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AXG02860.1|698084_698753_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AXG02861.1|699103_699697_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AXG02862.1|699680_700832_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	7.8e-23
>prophage 2
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	712803	727157	2768346		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
AXG02872.1|712803_713862_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AXG02873.1|714156_714699_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AXG02874.1|714811_714910_+	hypothetical protein	NA	NA	NA	NA	NA
AXG02875.1|715322_716240_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
AXG02876.1|716329_716431_+	hypothetical protein	NA	NA	NA	NA	NA
AXG02877.1|716508_718014_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AXG02878.1|718079_718325_-	hypothetical protein	NA	NA	NA	NA	NA
AXG02879.1|718354_718855_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AXG02880.1|718874_719741_-	DMT family transporter	NA	NA	NA	NA	NA
AXG02881.1|720554_720953_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AXG02882.1|720915_723021_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AXG02883.1|723138_724110_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AXG02884.1|724290_724446_+	hypothetical protein	NA	NA	NA	NA	NA
AXG04873.1|724484_725456_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AXG02885.1|725442_726399_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AXG02886.1|726395_727157_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	811463	856955	2768346	head,plate,capsid,integrase,terminase,tail,holin,portal	Staphylococcus_virus(51.56%)	66	809551:809567	842998:843014
809551:809567	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
AXG02971.1|811463_812705_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
AXG02972.1|812694_813159_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
AXG02973.1|813309_814707_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
AXG02974.1|814774_815824_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
AXG02975.1|815886_816402_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
AXG02976.1|816405_816906_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
AXG02977.1|816956_817595_-	LexA family transcriptional regulator	NA	E0Y3N7	Staphylococcus_virus	100.0	1.5e-116
AXG02978.1|817785_818040_+	XRE family transcriptional regulator	NA	A0A0E3T8G8	Staphylococcus_phage	100.0	8.2e-42
AXG02979.1|818055_818847_+	phage antirepressor	NA	E0Y3N9	Staphylococcus_virus	100.0	6.5e-146
AXG02980.1|818847_819072_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
AXG02981.1|819111_819561_+	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
AXG02982.1|819574_819796_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
AXG02983.1|819788_819956_+	DUF1270 family protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
AXG02984.1|819956_820277_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	100.0	4.8e-55
AXG02985.1|820370_820631_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
AXG02986.1|820640_820862_+	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
AXG02987.1|820854_821634_+	chromosomal replication initiator DnaA	NA	E0Y3P6	Staphylococcus_virus	99.6	5.6e-142
AXG04876.1|821717_822218_+	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
AXG02988.1|822230_822902_+	hypothetical protein	NA	E0Y3P8	Staphylococcus_virus	100.0	5.8e-127
AXG02989.1|823011_823671_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
AXG02990.1|823716_824487_+	replication protein	NA	A0A2H4PQI2	Staphylococcus_phage	100.0	2.4e-116
AXG02991.1|824496_825270_+	AAA family ATPase	NA	A0A2H4PQI3	Staphylococcus_phage	100.0	4.6e-144
AXG02992.1|825263_825422_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
AXG02993.1|825435_825657_+	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
AXG02994.1|825667_826072_+	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
AXG02995.1|826076_826262_+	DUF3113 family protein	NA	A0A2H4PQI8	Staphylococcus_phage	100.0	3.2e-27
AXG02996.1|826262_826631_+	hypothetical protein	NA	A0A2H4PQJ6	Staphylococcus_phage	100.0	3.1e-50
AXG02997.1|826634_826877_+	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	100.0	6.6e-41
AXG02998.1|826891_827143_+	DUF1024 family protein	NA	A0A2H4PQK1	Staphylococcus_phage	95.2	9.2e-38
AXG02999.1|827306_827588_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
AXG03000.1|827764_828298_+	dUTPase	NA	E0Y3R2	Staphylococcus_virus	100.0	6.0e-95
AXG03001.1|828334_828541_+	DUF1381 domain-containing protein	NA	E0Y3R3	Staphylococcus_virus	100.0	1.7e-29
AXG03002.1|828537_828711_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
AXG03003.1|828711_829074_+	hypothetical protein	NA	Q4ZDW4	Staphylococcus_virus	94.1	5.2e-58
AXG03004.1|829074_829221_+	hypothetical protein	NA	E0Y3R6	Staphylococcus_virus	100.0	1.7e-15
AXG03005.1|829235_829655_+	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	100.0	1.1e-70
AXG03006.1|829841_830282_+|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	100.0	1.3e-74
AXG03007.1|830268_831546_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	1.1e-248
AXG03008.1|831556_833092_+|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	99.6	3.8e-291
AXG03009.1|833098_834094_+|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	100.0	3.4e-184
AXG03010.1|834166_834337_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
AXG03011.1|834471_835086_+	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
AXG03012.1|835099_836074_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
AXG03013.1|836095_836383_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
AXG03014.1|836391_836724_+|head,tail	phage head-tail adapter protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
AXG03015.1|836720_837023_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	100.0	2.0e-50
AXG03016.1|837022_837370_+	hypothetical protein	NA	E0Y3L4	Staphylococcus_virus	100.0	4.1e-60
AXG03017.1|837381_837765_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	100.0	2.6e-68
AXG03018.1|837783_838365_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
AXG03019.1|838426_838792_+|tail	phage tail protein	tail	E0Y3L7	Staphylococcus_virus	100.0	9.6e-60
AXG03020.1|838821_839166_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AXG03021.1|839182_842650_+	hypothetical protein	NA	E0Y3L9	Staphylococcus_virus	100.0	1.2e-252
AXG03022.1|842662_843610_+|tail	phage tail family protein	tail	E0Y3M0	Staphylococcus_virus	100.0	2.8e-183
842998:843014	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
AXG03023.1|843618_845520_+	peptidase	NA	E0Y3M1	Staphylococcus_virus	100.0	0.0e+00
AXG03024.1|845534_847445_+	hypothetical protein	NA	Q8SDT4	Staphylococcus_phage	100.0	0.0e+00
AXG03025.1|847444_849268_+|plate	phage baseplate upper protein	plate	E0Y3M3	Staphylococcus_virus	100.0	0.0e+00
AXG03026.1|849267_849645_+	DUF2977 domain-containing protein	NA	E0Y3M4	Staphylococcus_virus	100.0	2.6e-60
AXG04877.1|849647_849821_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
AXG03027.1|849861_850161_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
AXG03028.1|850297_852196_+	CHAP domain-containing protein	NA	E0Y3M7	Staphylococcus_virus	100.0	0.0e+00
AXG03029.1|852208_853447_+	DUF2479 domain-containing protein	NA	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
AXG03030.1|853451_853847_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
AXG03031.1|853903_854158_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXG03032.1|854169_854925_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXG03033.1|855416_856211_+	phosphatidylinositol kinase	NA	E0Y3N2	Staphylococcus_virus	100.0	4.9e-149
AXG03034.1|856217_856955_+	hypothetical protein	NA	E0Y3N3	Staphylococcus_virus	100.0	4.4e-136
>prophage 4
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1017278	1025751	2768346		Synechococcus_phage(33.33%)	9	NA	NA
AXG03182.1|1017278_1017761_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AXG03183.1|1017747_1018872_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AXG03184.1|1018875_1019580_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AXG03185.1|1019579_1019843_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AXG03186.1|1019844_1020516_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AXG03187.1|1020508_1022698_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AXG03188.1|1022676_1024161_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	4.2e-45
AXG03189.1|1024153_1025182_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AXG03190.1|1025184_1025751_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 5
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1383976	1466163	2768346	transposase	Staphylococcus_phage(28.57%)	47	NA	NA
AXG03531.1|1383976_1385296_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AXG03532.1|1385660_1386062_-	MSA protein	NA	NA	NA	NA	NA
AXG03533.1|1386258_1386459_-	cold-shock protein CspA	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
AXG03534.1|1386493_1386682_+	hypothetical protein	NA	NA	NA	NA	NA
AXG03535.1|1386629_1386938_-	DUF1033 family protein	NA	NA	NA	NA	NA
AXG03536.1|1387100_1387370_+	acylphosphatase	NA	NA	NA	NA	NA
AXG03537.1|1387388_1388018_+	5-bromo-4-chloroindolyl phosphate hydrolase	NA	NA	NA	NA	NA
AXG03538.1|1388049_1389186_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	5.7e-34
AXG03539.1|1389258_1390602_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
AXG03540.1|1390826_1392713_-	nitric oxide reductase activation protein NorD	NA	NA	NA	NA	NA
AXG03541.1|1392726_1393518_-	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
AXG03542.1|1393698_1393902_-	hypothetical protein	NA	NA	NA	NA	NA
AXG03543.1|1393930_1394740_-	VOC family protein	NA	NA	NA	NA	NA
AXG03544.1|1395319_1396588_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AXG03545.1|1396601_1399400_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AXG03546.1|1399683_1401039_-	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
AXG03547.1|1401035_1401695_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
AXG03548.1|1402165_1402366_-	hypothetical protein	NA	NA	NA	NA	NA
AXG03549.1|1402482_1403097_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AXG03550.1|1403113_1404184_-	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AXG03551.1|1404195_1404705_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXG03552.1|1405104_1406595_-	PDZ domain-containing protein	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
AXG03553.1|1406786_1407008_-	YozE family protein	NA	NA	NA	NA	NA
AXG03554.1|1407007_1407508_-	glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA	NA
AXG03555.1|1407519_1407948_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
AXG03556.1|1407940_1408474_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AXG03557.1|1408559_1409399_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
AXG03558.1|1409413_1409893_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	2.0e-73
AXG03559.1|1410092_1411049_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	84.9	6.2e-167
AXG03560.1|1411472_1411910_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
AXG03561.1|1411925_1413050_-	virulence factor C	NA	NA	NA	NA	NA
AXG03562.1|1413087_1413339_-	scaffolding protein	NA	NA	NA	NA	NA
AXG03563.1|1413350_1413572_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AXG03564.1|1413789_1414494_+	VUT family protein	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
AXG03565.1|1414975_1415377_+	ribonuclease H	NA	NA	NA	NA	NA
AXG03566.1|1447477_1448869_-	quinolone resistance protein NorB	NA	NA	NA	NA	NA
AXG03567.1|1449024_1450347_-	amino acid permease	NA	NA	NA	NA	NA
AXG03568.1|1450377_1451418_-	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA	NA
AXG03569.1|1451512_1452631_-	alanine dehydrogenase	NA	NA	NA	NA	NA
AXG03570.1|1453105_1453984_-	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
AXG03571.1|1454003_1457444_-	dynamin family protein	NA	NA	NA	NA	NA
AXG03572.1|1458441_1459593_+|transposase	transposase	transposase	P97010	Streptococcus_pyogenes_phage	31.0	9.0e-11
AXG04894.1|1459631_1461659_+|transposase	transposase	transposase	NA	NA	NA	NA
AXG03573.1|1461667_1462033_+|transposase	transposase	transposase	NA	NA	NA	NA
AXG03574.1|1462061_1462481_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.1e-30
AXG03575.1|1462840_1464160_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AXG03576.1|1464483_1466163_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.4	5.5e-243
>prophage 6
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1576357	1584687	2768346	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AXG03694.1|1576357_1577143_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AXG03695.1|1577268_1578159_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
AXG03696.1|1578168_1579515_-	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AXG03697.1|1579628_1580729_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AXG03698.1|1580731_1581409_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AXG03699.1|1581539_1582646_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AXG03700.1|1582869_1584687_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 7
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1652467	1661507	2768346	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AXG03767.1|1652467_1652986_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AXG03768.1|1653007_1655278_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.4e-63
AXG03769.1|1655480_1657760_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AXG03770.1|1658034_1658295_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AXG03771.1|1658313_1659453_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.6e-84
AXG03772.1|1659475_1660501_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AXG03773.1|1660502_1661507_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1801620	1833587	2768346	protease	Staphylococcus_phage(93.33%)	34	NA	NA
AXG03897.1|1801620_1802622_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AXG03898.1|1802743_1803208_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AXG03899.1|1803220_1804402_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AXG03900.1|1804412_1805045_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AXG04905.1|1805051_1806083_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
AXG03901.1|1806575_1808078_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AXG03902.1|1808600_1808915_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
AXG03903.1|1808914_1810207_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AXG03904.1|1810293_1811148_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AXG03905.1|1811423_1811648_-	hypothetical protein	NA	NA	NA	NA	NA
AXG03906.1|1811846_1812317_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AXG03907.1|1812429_1812873_+	competence protein ComK	NA	NA	NA	NA	NA
AXG03908.1|1812859_1813303_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	7.1e-57
AXG03909.1|1813598_1814234_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
AXG03910.1|1814673_1815387_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AXG03911.1|1815646_1815949_+	hypothetical protein	NA	NA	NA	NA	NA
AXG03912.1|1816204_1816570_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AXG03913.1|1816566_1816920_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.9	1.0e-21
AXG03914.1|1818917_1819751_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
AXG03915.1|1819962_1820871_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AXG03916.1|1820995_1822189_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AXG03917.1|1822560_1824153_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AXG04906.1|1824405_1825152_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	1.3e-143
AXG03918.1|1825156_1825630_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
AXG03919.1|1825695_1825953_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AXG03920.1|1825949_1826951_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
AXG03921.1|1826955_1828434_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.2	2.5e-284
AXG03922.1|1828592_1829048_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	1.0e-79
AXG03923.1|1829350_1830001_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
AXG03924.1|1830081_1831077_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.4	9.6e-70
AXG03925.1|1831150_1831777_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.3	1.3e-88
AXG03926.1|1831817_1832159_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.9e-55
AXG03927.1|1832259_1832832_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	1.6e-24
AXG03928.1|1833029_1833587_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	97.5	3.1e-78
>prophage 9
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1838818	1851070	2768346	protease	Staphylococcus_phage(100.0%)	14	NA	NA
AXG03936.1|1838818_1839937_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
AXG03937.1|1839929_1841669_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	9.9e-288
AXG03938.1|1841649_1841784_-	hypothetical protein	NA	NA	NA	NA	NA
AXG03939.1|1841848_1842568_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
AXG03940.1|1842688_1843408_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AXG03941.1|1843465_1844188_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
AXG03942.1|1844312_1845020_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.9	1.6e-127
AXG03943.1|1845455_1845674_-	hypothetical protein	NA	NA	NA	NA	NA
AXG03944.1|1845983_1846562_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.1e-49
AXG03945.1|1847035_1847254_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
AXG03946.1|1847509_1847983_+	hypothetical protein	NA	NA	NA	NA	NA
AXG03947.1|1847987_1848779_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AXG03948.1|1849149_1850133_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
AXG03949.1|1850134_1851070_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	5.1e-174
>prophage 10
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1940694	1981152	2768346	tRNA,transposase,protease	Bacillus_virus(27.27%)	35	NA	NA
AXG04035.1|1940694_1942122_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	tRNA	NA	NA	NA	NA
AXG04036.1|1942134_1943592_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AXG04037.1|1943593_1943896_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AXG04038.1|1944263_1945802_+	sodium:proline symporter	NA	NA	NA	NA	NA
AXG04039.1|1945890_1947090_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
AXG04040.1|1947102_1949106_-	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
AXG04041.1|1949109_1951302_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
AXG04042.1|1951298_1951991_-	geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
AXG04043.1|1952162_1952465_-	hypothetical protein	NA	NA	NA	NA	NA
AXG04044.1|1952573_1953869_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
AXG04045.1|1954729_1955896_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
AXG04046.1|1955926_1956253_+	staphostatin A	NA	NA	NA	NA	NA
AXG04047.1|1956544_1956718_-	NETI motif-containing protein	NA	NA	NA	NA	NA
AXG04048.1|1956698_1957301_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AXG04049.1|1957571_1958393_-	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
AXG04050.1|1958385_1959855_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
AXG04051.1|1960038_1961115_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AXG04052.1|1961134_1961929_+	ACT domain-containing protein	NA	NA	NA	NA	NA
AXG04053.1|1962000_1962108_+	hypothetical protein	NA	NA	NA	NA	NA
AXG04054.1|1962118_1963681_-	SLC13 family permease	NA	NA	NA	NA	NA
AXG04055.1|1963885_1964983_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
AXG04056.1|1965354_1965915_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AXG04057.1|1965967_1966897_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AXG04058.1|1967089_1967263_-	hypothetical protein	NA	NA	NA	NA	NA
AXG04059.1|1967314_1968694_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AXG04060.1|1968813_1969842_-	hypothetical protein	NA	NA	NA	NA	NA
AXG04061.1|1970300_1970681_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
AXG04062.1|1970670_1972428_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
AXG04063.1|1972534_1973380_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
AXG04064.1|1973430_1975110_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.4	5.5e-243
AXG04065.1|1975433_1976753_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
AXG04066.1|1977112_1977532_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.1e-30
AXG04067.1|1977560_1977926_-|transposase	transposase	transposase	NA	NA	NA	NA
AXG04911.1|1977934_1979962_-|transposase	transposase	transposase	NA	NA	NA	NA
AXG04068.1|1980000_1981152_-|transposase	transposase	transposase	P97010	Streptococcus_pyogenes_phage	31.0	9.0e-11
>prophage 11
CP031130	Staphylococcus aureus strain F17SA003 chromosome, complete genome	2768346	1994692	2040449	2768346	head,capsid,integrase,terminase,protease,tail,holin,portal	Staphylococcus_phage(98.48%)	68	2014109:2014126	2038436:2038453
AXG04084.1|1994692_1994893_+	hypothetical protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AXG04085.1|1995264_1995444_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AXG04086.1|1995467_1995776_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
AXG04087.1|1995754_1996015_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
AXG04088.1|1997091_1997541_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AXG04089.1|1997635_1998094_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
AXG04090.1|1998620_1999112_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AXG04091.1|1999302_2000058_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AXG04092.1|2000069_2000324_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AXG04093.1|2000375_2000483_+	hypothetical protein	NA	NA	NA	NA	NA
AXG04094.1|2000535_2000712_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
AXG04095.1|2000861_2001158_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AXG04096.1|2001215_2001503_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AXG04097.1|2001549_2001702_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AXG04098.1|2001691_2005477_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
AXG04099.1|2005492_2006977_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
AXG04100.1|2006973_2011503_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
AXG04101.1|2011747_2012098_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AXG04102.1|2012147_2012372_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
AXG04103.1|2012413_2013058_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
AXG04104.1|2013058_2013466_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AXG04105.1|2013462_2013867_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
AXG04106.1|2013863_2014226_-|head,tail	phage head-tail adapter protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2014109:2014126	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AXG04107.1|2014209_2014494_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AXG04108.1|2014483_2014768_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AXG04109.1|2014787_2015933_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AXG04110.1|2015956_2016694_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AXG04111.1|2016677_2017865_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AXG04112.1|2017880_2019542_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AXG04113.1|2019538_2019883_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AXG04114.1|2020013_2020313_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AXG04115.1|2020544_2020961_-	transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AXG04116.1|2020988_2021189_-	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
AXG04117.1|2021188_2021338_-	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AXG04118.1|2021334_2021721_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AXG04119.1|2021717_2021924_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AXG04120.1|2021920_2022166_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AXG04121.1|2022202_2022739_-	dUTPase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
AXG04122.1|2022888_2023143_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
AXG04123.1|2023157_2023400_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
AXG04124.1|2023403_2023772_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AXG04125.1|2023784_2024189_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
AXG04126.1|2024197_2024416_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AXG04127.1|2024422_2025316_-	DnaD domain protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
AXG04128.1|2025345_2025816_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
AXG04129.1|2025816_2026434_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
AXG04130.1|2026514_2027435_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AXG04131.1|2027436_2029380_-	ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
AXG04132.1|2029388_2029652_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
AXG04133.1|2029660_2029921_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AXG04134.1|2029925_2030228_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AXG04135.1|2030322_2030484_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AXG04136.1|2030480_2030804_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AXG04137.1|2030858_2031239_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
AXG04138.1|2031225_2031423_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
AXG04139.1|2031438_2032191_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
AXG04140.1|2032241_2032571_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
AXG04141.1|2032559_2032775_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
AXG04142.1|2032771_2033053_-	XRE family transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
AXG04143.1|2033049_2033223_-	transcriptional regulator	NA	NA	NA	NA	NA
AXG04144.1|2033185_2033899_+	XRE family transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AXG04145.1|2033914_2034847_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AXG04146.1|2034852_2035194_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AXG04147.1|2035397_2035580_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
AXG04148.1|2035679_2036144_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
AXG04149.1|2036202_2037240_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
AXG04150.1|2038358_2039375_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	5.1e-26
2038436:2038453	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AXG04151.1|2039396_2040449_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PER8	Staphylococcus_phage	31.8	2.4e-34
