The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	52581	60053	1791576	terminase	Paenibacillus_phage(33.33%)	10	NA	NA
AXF95080.1|52581_54285_-|terminase	bacteriophage terminase-like protein, large subunit	terminase	A0A290GJW3	Caldibacillus_phage	34.5	6.7e-79
AXF95081.1|54287_54791_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95082.1|55152_55830_-	GANTC--recognizing Type II restriction modification system (MmyCIV) endonuclease subunit	NA	NA	NA	NA	NA
AXF95083.1|55816_56551_-	site-specific DNA-methyltransferase	NA	A0A0C5AFG8	Paenibacillus_phage	27.5	1.9e-14
AXF95084.1|56629_56911_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95085.1|56928_58041_-	deoxycytosine methylase	NA	A0A0E3DF50	Bacillus_phage	35.8	4.5e-44
AXF95086.1|58053_58458_-	HNH endonuclease, putative	NA	A0A0K2CYS9	Paenibacillus_phage	31.1	5.7e-05
AXF95087.1|58411_59266_-	hypothetical protein	NA	A0A0A7RUP3	Clostridium_phage	38.0	1.2e-39
AXF95088.1|59385_59628_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95089.1|59618_60053_-	putative single-strand binding protein SSB	NA	A7DYE1	Streptococcus_phage	37.6	8.3e-10
>prophage 2
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	64411	97693	1791576	transposase	Spiroplasma_phage(63.16%)	56	NA	NA
AXF95100.1|64411_65143_-	DNA methyltransferase	NA	E1AC06	Pseudoalteromonas_phage	38.4	2.9e-31
AXF95101.1|65295_65739_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	79.2	8.4e-58
AXF95102.1|65722_65992_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95103.1|66434_66680_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95104.1|67225_67864_+	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	51.9	8.6e-56
AXF95105.1|68091_68370_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95106.1|68506_69514_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	82.5	2.6e-163
AXF95107.1|69891_70206_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF6	Spiroplasma_phage	97.1	7.0e-51
AXF95108.1|70533_70755_+	spiroplasma plectrovirus-related protein	NA	Q9QTH4	Spiroplasma_phage	89.0	2.6e-28
AXF95109.1|70774_70957_+	spiroplasma plectrovirus-related protein	NA	Q9QTH2	Spiroplasma_phage	86.7	3.7e-20
AXF95110.1|71088_71292_+	spiroplasma plectrovirus-related protein	NA	Q9QTH1	Spiroplasma_phage	82.9	5.4e-12
AXF95111.1|71354_71513_+	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF95112.1|71512_71722_+	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	95.7	9.5e-12
AXF95113.1|71726_72737_+	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	95.2	2.0e-171
AXF95114.1|72729_73023_+	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	81.4	1.0e-32
AXF95115.1|73022_73259_+	spiroplasma plectrovirus-related	NA	Q9QTI0	Spiroplasma_phage	92.2	1.5e-29
AXF95116.1|73271_74678_+	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	66.0	1.3e-133
AXF95117.1|75127_76582_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95118.1|76820_77858_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	84.0	2.0e-166
AXF95119.1|78212_78527_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF6	Spiroplasma_phage	96.2	1.2e-50
AXF95120.1|78725_78947_+	spiroplasma plectrovirus-related protein	NA	Q9QTH4	Spiroplasma_phage	94.5	1.6e-30
AXF95121.1|78966_79149_+	spiroplasma plectrovirus-related protein	NA	Q9QTH2	Spiroplasma_phage	85.0	4.8e-20
AXF95122.1|79280_79484_+	spiroplasma plectrovirus-related protein	NA	Q9QTH1	Spiroplasma_phage	70.4	5.8e-06
AXF95123.1|79546_79705_+	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF95124.1|79704_79914_+	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	98.6	2.5e-12
AXF95125.1|79918_80929_+	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	90.8	2.9e-162
AXF95126.1|80921_81215_+	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	98.6	1.8e-32
AXF95127.1|81214_81451_+	spiroplasma plectrovirus-related protein	NA	Q9QTI0	Spiroplasma_phage	90.9	2.5e-29
AXF95128.1|81463_82867_+	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	66.8	4.4e-137
AXF95129.1|83014_83257_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95130.1|83259_83496_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95131.1|83964_84360_+	putative adhesin P18	NA	NA	NA	NA	NA
AXF95132.1|85027_85258_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	90.5	3.3e-34
AXF95133.1|85724_86264_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95134.1|86646_87279_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	52.9	1.2e-57
AXF95135.1|87578_88349_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	92.9	7.8e-136
AXF95136.1|88422_88656_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	85.7	1.8e-27
AXF95137.1|88636_88891_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	89.3	1.0e-36
AXF95138.1|88911_89145_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	47.6	1.3e-06
AXF95139.1|89216_89381_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95140.1|89518_89683_+|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF95141.1|89857_90469_+|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	32.8	4.0e-18
AXN69608.1|90680_91001_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69609.1|91116_91413_+	hypothetical protein	NA	NA	NA	NA	NA
AXN69610.1|91439_91646_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69611.1|91632_92103_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69612.1|92484_92826_+	Spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXN69613.1|92809_93259_+	Spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	92.6	1.3e-71
AXN69614.1|93819_94629_+	Spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	94.8	4.3e-145
AXN69615.1|94612_95017_+	Spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.7	2.9e-41
AXN69616.1|95016_95253_+	Spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXN69617.1|95368_95806_-	Spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	95.6	3.1e-73
AXN69618.1|96159_96348_-	hypothetical protein	NA	NA	NA	NA	NA
AXN69619.1|96335_96494_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95142.1|96715_96904_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95143.1|97399_97693_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.9	7.3e-26
>prophage 3
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	196641	240836	1791576	transposase,integrase	Spiroplasma_virus(88.89%)	57	240086:240145	249168:249246
AXF95271.1|196641_197193_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	92.6	6.2e-87
AXF95272.1|197451_197763_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.7	7.2e-40
AXF95273.1|197755_198565_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	94.4	5.7e-145
AXF95274.1|199124_199574_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	90.6	3.7e-69
AXF95275.1|199557_199920_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95276.1|200328_200508_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.8	3.0e-22
AXF95277.1|201114_203088_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95278.1|203089_204274_-	lipolytic enzyme, GDSL family	NA	NA	NA	NA	NA
AXF95279.1|204233_205142_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95280.1|205525_205762_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95281.1|206508_206673_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95282.1|206675_206924_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95283.1|206934_207132_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95284.1|207273_207534_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95285.1|207565_207808_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95286.1|208169_208469_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95287.1|208473_209172_-	putative adhesin P58	NA	NA	NA	NA	NA
AXF95288.1|209197_209992_-	putative adhesin P58	NA	NA	NA	NA	NA
AXF95289.1|209991_210384_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95290.1|210612_211605_+|transposase	transposase of IS30 family protein	transposase	H7BWC8	unidentified_phage	28.8	1.8e-20
AXF95291.1|211938_212172_+|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF95292.1|212480_212921_+|transposase	transposase of IS30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	32.4	3.3e-14
AXF95293.1|212872_213247_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95294.1|213438_213741_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95295.1|214027_214987_-	putative lipoprotein	NA	NA	NA	NA	NA
AXF95296.1|214999_219076_-	putative ABC-type transport system permease protein	NA	NA	NA	NA	NA
AXF95297.1|219118_219841_-	putative transmembrane protein	NA	NA	NA	NA	NA
AXF95298.1|219902_221459_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95299.1|221664_221880_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95300.1|222604_222781_+	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	52.6	4.8e-09
AXF95301.1|222966_223440_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95302.1|223910_225005_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	89.2	5.1e-181
AXF95303.1|225121_225598_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	41.7	5.3e-10
AXF95304.1|225608_227531_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	83.0	1.7e-304
AXF95305.1|227569_227803_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	90.2	1.2e-10
AXF95306.1|227814_228051_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	97.4	2.4e-32
AXF95307.1|228050_228428_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	98.8	4.3e-39
AXF95308.1|228420_229272_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	94.7	2.0e-153
AXF95309.1|230016_230244_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	96.0	1.2e-36
AXF95310.1|230227_230578_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95311.1|230902_231160_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	85.9	1.0e-31
AXF95312.1|231801_232110_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95313.1|232440_232758_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95314.1|232869_233376_-	putative thiol peroxidase	NA	NA	NA	NA	NA
AXF95315.1|233427_234213_-	putative ribosomal 23S rRNA methyltransferase	NA	NA	NA	NA	NA
AXF95316.1|234243_234756_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95317.1|235189_235369_+	spiroplasma plectrovirus-related protein	NA	A8RHI0	Spiroplasma_virus	68.9	3.8e-09
AXF95318.1|235346_235595_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	85.4	2.7e-29
AXF95319.1|235985_236282_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95320.1|236402_236657_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	88.1	6.9e-33
AXF95321.1|237163_237430_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	86.2	1.8e-31
AXF95322.1|237451_237697_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	98.4	1.6e-26
AXF95323.1|237689_238235_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	96.6	7.3e-96
AXF95324.1|238215_238500_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	93.5	2.2e-43
AXF95325.1|239060_239315_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	88.1	6.9e-33
240086:240145	attL	ACAAAAAATCGGTTATAATGTTTTTAAATTGCAAGCACAAAAAGAGAATGATATGTACCG	NA	NA	NA	NA
AXF95326.1|240190_240535_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	87.4	1.2e-48
AXF95327.1|240611_240836_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	71.7	1.2e-12
249168:249246	attR	ACAAAAAATCGGTTATAATGTTTTTAAATTGCAAGCACAAAAAGAGAATGATATGTACCGATATTATGATTTTAATTTT	NA	NA	NA	NA
>prophage 4
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	255227	264565	1791576	transposase	Spiroplasma_virus(83.33%)	16	NA	NA
AXF95339.1|255227_255407_+	spiroplasma plectrovirus-related protein	NA	A8RHI0	Spiroplasma_virus	70.8	6.8e-11
AXF95340.1|256377_256692_+	spiroplasma plectrovirus-related protein	NA	A8RHI5	Spiroplasma_virus	71.7	1.3e-17
AXF95341.1|256806_257100_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95342.1|257083_257533_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	89.9	8.2e-69
AXF95343.1|258092_258305_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	88.2	4.7e-27
AXF95344.1|258559_258904_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	95.6	6.1e-56
AXF95345.1|258896_259298_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.7	4.9e-41
AXF95346.1|259290_259527_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	97.4	1.4e-32
AXF95347.1|259538_259748_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95348.1|259747_259981_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	87.7	6.0e-23
AXF95349.1|260019_260259_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	73.2	4.2e-24
AXF95350.1|260218_260491_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	37.8	2.7e-06
AXF95351.1|260879_261581_+|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	31.5	1.7e-17
AXF95352.1|262081_262432_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95353.1|263019_263301_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95354.1|263491_264565_+	guanosine 5'-monophosphate oxidoreductase	NA	G3MBI2	Bacillus_virus	60.7	1.9e-108
>prophage 5
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	273011	278383	1791576		Spiroplasma_virus(71.43%)	7	NA	NA
AXF95370.1|273011_273317_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	96.8	6.8e-27
AXF95371.1|273316_273553_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF95372.1|273564_274152_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	87.7	3.8e-90
AXF95373.1|274462_274909_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	85.8	4.9e-66
AXF95374.1|274924_275575_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	71.1	4.2e-98
AXF95375.1|275934_276894_-	copper transporter ATPase	NA	A0A218MNH6	uncultured_virus	28.8	5.3e-25
AXF95376.1|277138_278383_-	Recombination factor protein RarA	NA	A0A127AWE7	Bacillus_phage	42.5	1.4e-81
>prophage 6
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	299060	310026	1791576	transposase,protease	Spiroplasma_virus(77.78%)	12	NA	NA
AXF95399.1|299060_301379_-|protease	class III heat-shock ATP-dependent LonA protease	protease	A0A0R6PGP8	Moraxella_phage	44.4	4.1e-180
AXF95400.1|301893_302685_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95401.1|303224_303467_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	86.2	4.0e-30
AXF95402.1|303787_304150_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95403.1|304133_304583_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	89.3	1.8e-68
AXF95404.1|304735_304939_+	spiroplasma plectrovirus-related protein	NA	A8RHJ3	Spiroplasma_virus	91.0	1.2e-27
AXF95405.1|305142_305952_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	92.6	1.2e-139
AXF95406.1|306094_306322_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	93.8	3.7e-09
AXF95407.1|306321_306558_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	93.6	2.3e-30
AXF95408.1|306899_308492_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	72.0	1.5e-266
AXF95409.1|309077_309620_+|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF95410.1|309597_310026_+|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	33.6	2.4e-09
>prophage 7
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	339064	343174	1791576		Spiroplasma_virus(100.0%)	7	NA	NA
AXF95451.1|339064_339226_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	94.0	4.3e-20
AXF95452.1|339345_339582_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF95453.1|339581_339965_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	95.5	2.6e-39
AXF95454.1|340029_340770_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	94.7	6.6e-132
AXF95455.1|341300_341555_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	86.9	2.6e-32
AXF95456.1|341800_342097_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95457.1|342928_343174_-	spiroplasma plectrovirus-related protein	NA	A8RHH7	Spiroplasma_virus	85.7	1.3e-07
>prophage 8
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	441826	447076	1791576	transposase	Spiroplasma_virus(85.71%)	8	NA	NA
AXF95578.1|441826_442819_-|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	30.3	3.4e-27
AXF95579.1|443285_443537_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.2	1.2e-32
AXF95580.1|443919_444261_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95581.1|444244_444694_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	90.6	2.5e-70
AXF95582.1|445254_445980_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	95.2	3.8e-124
AXF95583.1|446057_446453_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	98.9	3.7e-41
AXF95584.1|446452_446689_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF95585.1|446794_447076_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	77.3	2.6e-25
>prophage 9
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	463002	470413	1791576		Spiroplasma_virus(90.91%)	12	NA	NA
AXF95617.1|463002_463398_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.4e-32
AXF95618.1|464098_464539_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	89.0	2.2e-66
AXF95619.1|465434_465803_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	95.1	5.5e-63
AXF95620.1|466301_466538_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	97.4	1.4e-32
AXF95621.1|466541_466796_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95622.1|466795_467032_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	83.3	2.0e-10
AXF95623.1|467070_467433_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	74.3	7.1e-39
AXF95624.1|467555_467819_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	74.1	5.0e-26
AXF95625.1|467905_468358_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	95.3	3.1e-76
AXF95626.1|468397_468817_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	88.5	6.7e-65
AXF95627.1|468828_469281_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	79.2	8.4e-05
AXF95628.1|469432_470413_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	46.9	3.4e-75
>prophage 10
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	562311	604073	1791576	integrase,tRNA,transposase	Spiroplasma_virus(88.46%)	57	594112:594171	597598:597707
AXF95724.1|562311_563043_-|tRNA	tRNA (guanine-N(1)-)-methyltransferase	tRNA	NA	NA	NA	NA
AXF95725.1|563044_563536_-	16S rRNA processing protein	NA	NA	NA	NA	NA
AXF95726.1|563536_563788_-	putative RNA-binding protein	NA	NA	NA	NA	NA
AXF95727.1|563813_564173_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AXF95728.1|564306_564555_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95729.1|564556_565009_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95730.1|565455_565632_+	spiroplasma plectrovirus-related protein	NA	A8RHI0	Spiroplasma_virus	77.8	4.7e-12
AXF95731.1|565600_565852_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.2	5.8e-32
AXF95732.1|566169_566400_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	97.3	4.2e-37
AXF95733.1|567648_568065_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	36.8	2.2e-07
AXF95734.1|568076_568274_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	96.9	1.7e-26
AXF95735.1|568301_569228_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	92.5	1.5e-162
AXF95736.1|569876_570086_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	85.7	1.6e-14
AXF95737.1|570501_570753_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.2	1.2e-32
AXF95738.1|571146_572130_-|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	33.0	4.8e-29
AXF95739.1|572439_572835_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95740.1|572837_574298_+	putative adhesin P58	NA	NA	NA	NA	NA
AXF95741.1|574297_574576_+	putative adhesin P12	NA	NA	NA	NA	NA
AXF95742.1|574568_575963_+	putative adhesin P54	NA	NA	NA	NA	NA
AXF95743.1|575966_579197_+	putative adhesin P123	NA	NA	NA	NA	NA
AXF95744.1|579227_579755_-	putative lipoprotein	NA	NA	NA	NA	NA
AXF95745.1|580268_580730_+	putative adhesin P18	NA	NA	NA	NA	NA
AXF95746.1|580745_582029_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95747.1|582457_582685_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95748.1|582687_583626_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95749.1|583615_584944_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95750.1|584946_585546_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95751.1|585661_585958_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95752.1|585993_586272_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95753.1|586264_586483_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95754.1|586487_586955_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95755.1|586954_587626_-	putative prophage recombination protein	NA	R9ZVT8	Cellulophaga_phage	31.1	1.7e-06
AXF95756.1|587609_588263_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95757.1|588253_588679_-	putative single-strand binding protein SSB	NA	A7DYE1	Streptococcus_phage	34.9	4.3e-11
AXF95758.1|588678_588927_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95759.1|588926_589235_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95760.1|589375_589543_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95761.1|589835_590117_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95762.1|590634_590871_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95763.1|591004_591286_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	96.8	1.2e-46
AXF95764.1|591300_591825_-	hypothetical protein	NA	A8RHK2	Spiroplasma_virus	32.8	1.2e-07
AXF95765.1|591941_592118_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	94.1	1.8e-19
AXF95766.1|592086_593031_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.6	3.3e-152
AXF95767.1|593603_594185_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	85.5	1.1e-76
594112:594171	attL	GATTGCTCCTTTTTATTGTTTTATATATAATTGATTTTATCACATATCAATTATATATCA	NA	NA	NA	NA
AXF95768.1|594224_594395_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	94.1	1.0e-19
AXF95769.1|594382_595312_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.9	7.2e-152
AXF95770.1|595491_595665_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95771.1|596455_597544_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.9	2.8e-179
AXF95772.1|597660_598113_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	38.7	4.4e-06
597598:597707	attR	TGATATATAATTGATATGTGATAAAATCAATTATATATAAAACAATAAAAAGGAGCAATCTATATGAAAAAATGACTTAGCATAATAGGAGCAATCGGATTAACCGCAAC	NA	NA	NA	NA
AXF95773.1|598124_600296_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	84.9	0.0e+00
AXF95774.1|600307_600544_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF95775.1|600543_600939_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.7	2.8e-41
AXF95776.1|600931_601792_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	96.1	2.2e-155
AXF95777.1|602299_602647_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95778.1|602648_603098_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	89.9	1.8e-68
AXF95779.1|603081_603441_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95780.1|603821_604073_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
>prophage 11
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	703640	720114	1791576	transposase,integrase	Spiroplasma_virus(75.0%)	20	707815:707832	717477:717494
AXF95896.1|703640_705173_-	ABC transporter ATP-binding protein	NA	A0A1V0SKJ1	Klosneuvirus	31.5	5.3e-59
AXF95897.1|705295_706033_-	triosephosphate isomerase	NA	NA	NA	NA	NA
AXF95898.1|706331_706589_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95899.1|706575_706950_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95900.1|707376_707676_-	hypothetical protein	NA	NA	NA	NA	NA
707815:707832	attL	TATTAATACTATTAATAA	NA	NA	NA	NA
AXF95901.1|708142_708394_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
AXF95902.1|708788_709229_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	91.8	5.5e-70
AXF95903.1|709737_710598_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	95.4	9.3e-154
AXF95904.1|710581_711037_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	95.5	5.2e-39
AXF95905.1|711052_711289_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF95906.1|711300_711546_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF95907.1|711714_713721_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	80.7	0.0e+00
AXF95908.1|713732_714191_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	36.1	7.4e-09
AXF95909.1|714307_715396_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.6	1.5e-177
AXF95910.1|715816_716023_+|transposase	transposase of IS30 family protein	transposase	NA	NA	NA	NA
AXF95911.1|716452_716689_+|transposase	transposase of IS30 family protein	transposase	H7BWC8	unidentified_phage	36.5	7.9e-07
AXF95912.1|716851_717025_-	spiroplasma plectrovirus-related protein	NA	A8RHI0	Spiroplasma_virus	68.8	1.9e-10
AXF95913.1|717349_717706_+	hypothetical protein	NA	NA	NA	NA	NA
717477:717494	attR	TTATTAATAGTATTAATA	NA	NA	NA	NA
AXF95914.1|717695_719114_-	amino acid permease	NA	NA	NA	NA	NA
AXF95915.1|719178_720114_-	hypothetical protein	NA	Q7AWZ3	Streptococcus_phage	27.6	1.7e-20
>prophage 12
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	785905	801623	1791576	integrase,transposase	Spiroplasma_phage(77.78%)	24	789089:789110	793796:793817
AXF95994.1|785905_786706_-|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	32.0	5.8e-17
AXF95995.1|786927_788391_+	hypothetical protein	NA	NA	NA	NA	NA
AXF95996.1|788626_789628_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	82.8	9.7e-163
789089:789110	attL	ATACATTTTCATATAATATTTA	NA	NA	NA	NA
AXF95997.1|789883_790156_-	hypothetical protein	NA	NA	NA	NA	NA
AXF95998.1|790384_790699_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF6	Spiroplasma_phage	96.2	1.2e-50
AXF95999.1|790897_791149_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	82.9	1.3e-23
AXF96000.1|791159_791549_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	37.0	2.5e-05
AXF96001.1|791665_792754_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.9	2.8e-179
AXF96002.1|793318_794032_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	69.4	3.9e-73
793796:793817	attR	ATACATTTTCATATAATATTTA	NA	NA	NA	NA
AXF96003.1|794124_794370_+	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	53.3	5.0e-12
AXF96004.1|794895_795264_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96005.1|795935_797351_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	97.4	4.2e-268
AXF96006.1|797361_797601_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE8	Spiroplasma_phage	98.7	5.5e-32
AXF96007.1|797600_797891_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE9	Spiroplasma_phage	90.6	1.4e-42
AXF96008.1|797897_798665_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF0	Spiroplasma_phage	96.0	5.6e-134
AXF96009.1|798901_799099_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96010.1|799098_799296_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF1	Spiroplasma_phage	96.3	3.6e-21
AXF96011.1|799310_799520_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF2	Spiroplasma_phage	100.0	5.0e-13
AXF96012.1|799606_799783_-	putative phage transmembrane protein	NA	Q3ZVF3	Spiroplasma_phage	96.6	9.7e-18
AXF96013.1|799784_799985_-	putative phage transmembrane protein	NA	Q3ZVF4	Spiroplasma_phage	98.3	2.4e-20
AXF96014.1|799965_800235_-	putative phage transmembrane protein	NA	Q3ZVF5	Spiroplasma_phage	94.4	4.0e-39
AXF96015.1|800564_800738_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96016.1|800747_800942_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96017.1|801323_801623_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	68.5	6.1e-28
>prophage 13
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	861231	868620	1791576	integrase	Spiroplasma_virus(100.0%)	14	867454:867471	874208:874225
AXF96088.1|861231_861411_+	spiroplasma plectrovirus-related protein	NA	A8RHI0	Spiroplasma_virus	81.6	1.1e-13
AXF96089.1|861388_861631_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	88.8	6.8e-30
AXF96090.1|861859_862042_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96091.1|862386_862716_+	spiroplasma plectrovirus-related protein	NA	A8RHI5	Spiroplasma_virus	71.7	2.2e-15
AXF96092.1|862699_863008_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	96.1	7.3e-53
AXF96093.1|863786_864518_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	93.4	6.3e-127
AXF96094.1|864501_864906_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	93.1	5.1e-38
AXF96095.1|864905_865142_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	92.3	6.7e-30
AXF96096.1|865153_865399_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96097.1|865567_866527_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	57.7	3.0e-100
AXF96098.1|866593_866887_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	95.9	6.3e-46
867454:867471	attL	TATTTTTTTATTAATTAT	NA	NA	NA	NA
AXF96099.1|867473_867701_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96100.1|867655_867859_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96101.1|867975_868620_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	86.0	2.1e-102
874208:874225	attR	ATAATTAATAAAAAAATA	NA	NA	NA	NA
>prophage 14
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	924569	934482	1791576	portal,terminase	Clostridium_phage(33.33%)	9	NA	NA
AXF96161.1|924569_925424_+	hypothetical protein	NA	A0A0A7RUP3	Clostridium_phage	38.0	1.2e-39
AXF96162.1|925377_925782_+	HNH endonuclease, putative	NA	A0A0K2CYS9	Paenibacillus_phage	31.1	5.7e-05
AXF96163.1|925794_926907_+	deoxycytosine methylase	NA	A0A0E3DF50	Bacillus_phage	35.8	2.0e-44
AXF96164.1|926924_927494_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96165.1|927751_928255_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96166.1|928257_929961_+|terminase	bacteriophage terminase-like protein, large subunit	terminase	A0A290GJW3	Caldibacillus_phage	34.5	6.7e-79
AXF96167.1|930003_930741_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96168.1|931508_932720_+|portal	bacteriophage portal protein	portal	J9QE83	Clostridium_phage	25.7	7.9e-26
AXF96169.1|932706_934482_+	hypothetical protein	NA	A0A1W6JQG3	Corynebacterium_phage	28.4	1.1e-07
>prophage 15
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	955833	963305	1791576	terminase	Paenibacillus_phage(33.33%)	10	NA	NA
AXF96202.1|955833_956268_+	putative single-strand binding protein SSB	NA	A7DYE1	Streptococcus_phage	37.6	8.3e-10
AXF96203.1|956258_956501_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96204.1|956620_957475_+	hypothetical protein	NA	A0A0A7RUP3	Clostridium_phage	38.0	1.2e-39
AXF96205.1|957428_957833_+	HNH endonuclease, putative	NA	A0A0K2CYS9	Paenibacillus_phage	31.1	5.7e-05
AXF96206.1|957845_958958_+	deoxycytosine methylase	NA	A0A0E3DF50	Bacillus_phage	35.8	4.5e-44
AXF96207.1|958975_959257_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96208.1|959335_960070_+	site-specific DNA-methyltransferase	NA	A0A0C5AFG8	Paenibacillus_phage	27.5	1.9e-14
AXF96209.1|960056_960734_+	GANTC--recognizing Type II restriction modification system (MmyCIV) endonuclease subunit	NA	NA	NA	NA	NA
AXF96210.1|961095_961599_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96211.1|961601_963305_+|terminase	bacteriophage terminase-like protein, large subunit	terminase	A0A290GJW3	Caldibacillus_phage	34.5	6.7e-79
>prophage 16
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	982040	1009539	1791576	integrase	Spiroplasma_phage(74.36%)	48	978599:978619	1011437:1011457
978599:978619	attL	AAATCAGTTTATCGTTGAAAT	NA	NA	NA	NA
AXF96233.1|982040_982775_-	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	61.1	5.4e-78
AXF96234.1|982787_983024_-	spiroplasma plectrovirus-related protein	NA	Q9QTI0	Spiroplasma_phage	92.2	1.5e-29
AXF96235.1|983023_983317_-	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	81.4	1.0e-32
AXF96236.1|983309_984320_-	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	95.2	2.0e-171
AXF96237.1|984324_984534_-	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	95.7	9.5e-12
AXF96238.1|984533_984692_-	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF96239.1|984754_984958_-	spiroplasma plectrovirus-related protein	NA	Q9QTH1	Spiroplasma_phage	82.9	5.4e-12
AXF96240.1|985089_985272_-	spiroplasma plectrovirus-related protein	NA	Q9QTH2	Spiroplasma_phage	86.7	3.7e-20
AXF96241.1|985291_985513_-	spiroplasma plectrovirus-related protein	NA	Q9QTH4	Spiroplasma_phage	89.0	2.6e-28
AXF96242.1|985840_986155_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF6	Spiroplasma_phage	97.1	7.0e-51
AXF96243.1|986532_987540_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	82.5	2.6e-163
AXF96244.1|987676_987955_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96245.1|988088_988550_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96246.1|988824_989046_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	98.6	1.9e-34
AXF96247.1|989063_989354_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	88.7	1.2e-41
AXF96248.1|989411_989666_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	45.7	7.0e-25
AXF96249.1|990071_990362_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE9	Spiroplasma_phage	96.9	1.8e-45
AXF96250.1|990364_991006_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF0	Spiroplasma_phage	99.1	2.7e-118
AXF96251.1|991080_991371_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF0	Spiroplasma_phage	98.9	2.1e-33
AXF96252.1|991371_991569_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96253.1|991568_991733_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF1	Spiroplasma_phage	96.3	1.3e-19
AXF96254.1|991797_991989_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF2	Spiroplasma_phage	98.4	7.3e-27
AXF96255.1|992075_992249_-	putative phage transmembrane protein	NA	Q3ZVF3	Spiroplasma_phage	100.0	1.7e-19
AXF96256.1|992250_992430_-	putative phage transmembrane protein	NA	Q3ZVF4	Spiroplasma_phage	98.3	2.3e-19
AXF96257.1|992514_992700_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96258.1|993036_993210_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96259.1|993185_993401_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96260.1|993792_994092_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	65.3	2.1e-28
AXF96261.1|994670_995753_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	89.5	5.9e-182
AXF96262.1|995869_996340_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	36.5	2.1e-06
AXF96263.1|996351_998433_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	82.8	0.0e+00
AXF96264.1|998552_998789_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	97.4	2.4e-32
AXF96265.1|998838_999267_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	81.9	2.2e-55
AXF96266.1|999622_1000072_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	91.3	5.1e-71
AXF96267.1|1000055_1000415_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96268.1|1000795_1001047_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
AXF96269.1|1001326_1001821_-	spiroplasma plectrovirus-related protein	NA	Q3ZVF7	Spiroplasma_phage	76.5	4.3e-39
AXF96270.1|1002088_1002700_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96271.1|1003567_1003726_+	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF96272.1|1003725_1003935_+	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	97.1	2.5e-12
AXF96273.1|1004223_1004949_+	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	93.4	1.1e-128
AXF96274.1|1004941_1005304_+	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	90.9	3.2e-31
AXF96275.1|1005303_1005573_+	spiroplasma plectrovirus-related protein	NA	Q9QTI0	Spiroplasma_phage	88.3	2.9e-29
AXF96276.1|1005554_1006958_+	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	65.9	7.1e-135
AXF96277.1|1007103_1007493_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96278.1|1007507_1008149_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	93.0	1.0e-112
AXF96279.1|1008190_1008733_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	89.2	4.0e-78
AXF96280.1|1008765_1009539_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	69.9	2.7e-72
1011437:1011457	attR	AAATCAGTTTATCGTTGAAAT	NA	NA	NA	NA
>prophage 17
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1023660	1028806	1791576	integrase	Spiroplasma_virus(87.5%)	9	1015872:1015890	1039365:1039383
1015872:1015890	attL	ATTAAAAATTGCCATTTTA	NA	NA	NA	NA
AXF96298.1|1023660_1023879_+	Type I restriction-modification system, methyltransferase subunit	NA	P95687	Staphylococcus_phage	36.1	6.9e-05
AXF96299.1|1023903_1024272_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	96.4	3.2e-55
AXF96300.1|1024349_1024754_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.7	4.2e-40
AXF96301.1|1024753_1024990_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	93.6	2.1e-31
AXF96302.1|1025001_1025187_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	91.4	5.8e-21
AXF96303.1|1025146_1025647_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	82.9	2.4e-45
AXF96304.1|1025949_1027137_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	91.9	2.1e-209
AXF96305.1|1027163_1027589_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96306.1|1027705_1028806_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	87.6	1.1e-175
1039365:1039383	attR	ATTAAAAATTGCCATTTTA	NA	NA	NA	NA
>prophage 18
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1075746	1089855	1791576	integrase	Spiroplasma_phage(58.82%)	22	1075497:1075512	1096245:1096260
1075497:1075512	attL	GCGGATAATTTATTCA	NA	NA	NA	NA
AXF96357.1|1075746_1076004_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	85.9	1.0e-31
AXF96358.1|1076328_1076679_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96359.1|1076662_1077115_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	90.0	6.3e-69
AXF96360.1|1077674_1078484_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	95.2	8.7e-146
AXF96361.1|1078476_1079826_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	94.4	9.2e-225
AXF96362.1|1079837_1080290_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	38.7	4.4e-06
AXF96363.1|1080435_1081842_-	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	66.0	1.3e-133
AXF96364.1|1081854_1082091_-	spiroplasma plectrovirus-related protein	NA	Q9QTI0	Spiroplasma_phage	92.2	1.5e-29
AXF96365.1|1082090_1082384_-	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	97.2	4.4e-31
AXF96366.1|1082376_1083387_-	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	92.6	1.7e-167
AXF96367.1|1083391_1083601_-	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	97.1	1.6e-11
AXF96368.1|1083600_1083759_-	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF96369.1|1083821_1084025_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96370.1|1084156_1084339_-	spiroplasma plectrovirus-related protein	NA	Q9QTH2	Spiroplasma_phage	86.7	1.3e-20
AXF96371.1|1084358_1084580_-	spiroplasma plectrovirus-related protein	NA	Q9QTH4	Spiroplasma_phage	93.2	1.6e-30
AXF96372.1|1084821_1085169_-	spiroplasma plectrovirus-related protein	NA	Q9QTH5	Spiroplasma_phage	95.7	3.8e-58
AXF96373.1|1085642_1086572_-	spiroplasma plectrovirus-related protein	NA	Q9QTH8	Spiroplasma_phage	95.5	3.7e-172
AXF96374.1|1086848_1087937_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	79.7	1.6e-155
AXF96375.1|1088271_1088598_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96376.1|1088610_1089081_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96377.1|1089219_1089564_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96378.1|1089579_1089855_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	86.8	5.4e-39
1096245:1096260	attR	TGAATAAATTATCCGC	NA	NA	NA	NA
>prophage 19
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1107527	1119286	1791576	integrase	Spiroplasma_virus(90.91%)	12	1105284:1105299	1116159:1116174
1105284:1105299	attL	AATCAATTATTAAATA	NA	NA	NA	NA
AXF96391.1|1107527_1107779_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
AXF96392.1|1108160_1108601_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	90.4	2.1e-69
AXF96393.1|1108753_1108957_+	spiroplasma plectrovirus-related protein	NA	A8RHJ3	Spiroplasma_virus	94.0	2.2e-29
AXF96394.1|1109151_1110165_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	89.6	9.8e-171
AXF96395.1|1110157_1110535_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.6	1.6e-38
AXF96396.1|1110534_1110771_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF96397.1|1110782_1112549_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	77.5	2.0e-275
AXF96398.1|1112484_1112817_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	94.7	3.2e-46
AXF96399.1|1112831_1113227_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	40.9	3.3e-05
AXF96400.1|1113343_1114432_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.9	1.8e-178
AXF96401.1|1115205_1116219_-	hypothetical protein	NA	NA	NA	NA	NA
1116159:1116174	attR	TATTTAATAATTGATT	NA	NA	NA	NA
AXF96402.1|1116463_1119286_-	cation-transporting ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.8	5.7e-83
>prophage 20
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1234655	1241496	1791576	transposase	Spiroplasma_virus(87.5%)	11	NA	NA
AXF96533.1|1234655_1235939_-	cytosine-specific DNA methylase	NA	Q6DMX0	Streptococcus_phage	43.8	6.9e-36
AXF96534.1|1236395_1236956_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96535.1|1237072_1237243_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96536.1|1237732_1237939_-|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF96537.1|1238045_1238702_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	80.8	4.1e-85
AXF96538.1|1238713_1238950_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	94.9	1.2e-31
AXF96539.1|1238949_1239345_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	96.6	1.4e-40
AXF96540.1|1239337_1239682_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	96.5	1.6e-56
AXF96541.1|1239695_1240199_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	92.6	8.5e-83
AXF96542.1|1240351_1240555_-	spiroplasma plectrovirus-related protein	NA	A8RHJ3	Spiroplasma_virus	92.5	2.4e-28
AXF96543.1|1241244_1241496_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
>prophage 21
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1287249	1347701	1791576	integrase,tRNA,transposase,protease	Spiroplasma_virus(36.36%)	58	1282577:1282636	1352362:1352448
1282577:1282636	attL	TTAGTGAAATAATTGTTTTAATTGGTGATACCATTCATGATAATCAAAAAATAGATGGTA	NA	NA	NA	NA
AXF96598.1|1287249_1289166_-|tRNA	putative threonyl-tRNA synthetase	tRNA	A0A2K9L6B6	Tupanvirus	31.7	8.9e-80
AXF96599.1|1289421_1290858_-	pyruvate kinase	NA	NA	NA	NA	NA
AXF96600.1|1290911_1291895_-	6-phosphofructokinase	NA	NA	NA	NA	NA
AXF96601.1|1292045_1292759_-	spiralin	NA	NA	NA	NA	NA
AXF96602.1|1292996_1293632_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96603.1|1293663_1294554_-	elongation factor Ts	NA	NA	NA	NA	NA
AXF96604.1|1294625_1295723_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
AXF96605.1|1296053_1296980_-	putative transmembrane protein	NA	NA	NA	NA	NA
AXF96606.1|1297058_1297400_-	putative holo-acyl-carrier-protein synthase	NA	NA	NA	NA	NA
AXF96607.1|1297498_1298398_+	ribonuclease HIII	NA	NA	NA	NA	NA
AXF96608.1|1298412_1299633_-	putative transmembrane protein	NA	NA	NA	NA	NA
AXF96609.1|1299728_1300229_-	deoxycytidylate deaminase	NA	V5LNH9	Emiliania_huxleyi_virus	53.9	4.0e-40
AXF96610.1|1300216_1301608_-	putative transmembrane protein	NA	NA	NA	NA	NA
AXF96611.1|1301614_1302544_-	ribosomal large subunit pseudouridylate synthase D	NA	NA	NA	NA	NA
AXF96612.1|1302527_1303115_-	putative signal peptidase II	NA	NA	NA	NA	NA
AXF96613.1|1303145_1305872_-|tRNA	putative isoleucyl-tRNA synthetase	tRNA	A0A1V0SGW1	Hokovirus	26.7	1.8e-62
AXF96614.1|1306106_1306601_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96615.1|1306707_1306935_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96616.1|1306879_1307311_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96617.1|1307267_1307693_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96618.1|1307695_1308925_-	cell division protein FtsZ	NA	G3MBK4	Bacillus_virus	27.7	2.2e-07
AXF96619.1|1308965_1310309_-	cell division protein FtsA	NA	NA	NA	NA	NA
AXF96620.1|1310340_1311282_-	putative S-adenosylmethionine-dependent methyltransferase	NA	NA	NA	NA	NA
AXF96621.1|1311285_1311747_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96622.1|1311920_1312097_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
AXF96623.1|1312096_1312615_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96624.1|1312769_1313612_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96625.1|1313734_1316128_-|tRNA	phenylalanyl-tRNA synthetase subunit beta	tRNA	NA	NA	NA	NA
AXF96626.1|1316138_1317176_-|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	30.4	4.6e-22
AXF96627.1|1317482_1320686_-	ABC transporter permease	NA	NA	NA	NA	NA
AXF96628.1|1322258_1322948_-	putative zinc metallopeptidase	NA	NA	NA	NA	NA
AXF96629.1|1322981_1324292_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96630.1|1325098_1326235_-	putative lipoprotein	NA	NA	NA	NA	NA
AXF96631.1|1326281_1326995_-	putative transmembrane protein	NA	NA	NA	NA	NA
AXF96632.1|1327076_1328879_-	GTP-binding protein LepA	NA	E4ZFJ7	Streptococcus_phage	25.9	2.1e-22
AXF96633.1|1329082_1329577_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96634.1|1329593_1330157_-	putative transmembrane protein	NA	NA	NA	NA	NA
AXF96635.1|1330137_1331097_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
AXF96636.1|1331083_1333111_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96637.1|1333174_1333789_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96638.1|1333893_1334610_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96639.1|1334670_1335096_-	ribosomal-protein-alanine acetyltransferase	NA	NA	NA	NA	NA
AXF96640.1|1335096_1335669_-|protease	glycoprotease	protease	NA	NA	NA	NA
AXF96641.1|1335670_1336132_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96642.1|1336246_1337233_+	thioredoxin reductase	NA	G3MA85	Bacillus_virus	26.7	1.1e-12
AXF96643.1|1337257_1339123_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96644.1|1339148_1340087_-	ribosomal large subunit pseudouridine synthase C	NA	NA	NA	NA	NA
AXF96645.1|1340153_1341371_-	hypothetical protein	NA	NA	NA	NA	NA
AXF96646.1|1341626_1341806_-|transposase	transposase of IS30 family protein	transposase	NA	NA	NA	NA
AXF96647.1|1341831_1342542_-	putative adhesin P123	NA	NA	NA	NA	NA
AXF96648.1|1342790_1343885_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	90.3	1.9e-183
AXF96649.1|1344318_1344522_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96650.1|1344988_1345312_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	90.6	2.9e-52
AXF96651.1|1345351_1345603_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.2	1.2e-32
AXF96652.1|1346141_1346609_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	71.4	3.1e-39
AXF96653.1|1346749_1346914_+|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF96654.1|1346894_1347365_+|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF96655.1|1347467_1347701_+|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
1352362:1352448	attR	TTAGTGAAATAATTGTTTTAATTGGTGATACCATTCATGATAATCAAAAAATAGATGGTATCACATTTGTAAAAAATGAATTTATTA	NA	NA	NA	NA
>prophage 22
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1351690	1365446	1791576	integrase	Spiroplasma_virus(50.0%)	25	1349883:1349899	1368002:1368018
1349883:1349899	attL	TTAAAACAATTGCAATT	NA	NA	NA	NA
AXF96661.1|1351690_1351948_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	85.9	6.6e-31
AXF96662.1|1352270_1352510_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96663.1|1352682_1353123_+	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	91.8	1.9e-70
AXF96664.1|1353674_1354688_+	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	89.6	4.9e-170
AXF96665.1|1354671_1355076_+	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	95.4	7.2e-40
AXF96666.1|1355075_1355312_+	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	94.9	3.5e-31
AXF96667.1|1355323_1355533_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96668.1|1355532_1355769_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	87.8	3.1e-11
AXF96669.1|1355807_1356095_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	73.6	1.0e-24
AXF96670.1|1356070_1356343_+	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96671.1|1356396_1357446_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	91.7	7.8e-155
AXF96672.1|1357433_1357688_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	95.2	1.7e-39
AXF96673.1|1358292_1359699_-	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	65.7	2.3e-133
AXF96674.1|1359711_1359948_-	spiroplasma plectrovirus-related protein	NA	Q9QTI0	Spiroplasma_phage	92.2	1.5e-29
AXF96675.1|1359947_1360241_-	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	97.2	4.4e-31
AXF96676.1|1360233_1361244_-	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	91.4	8.9e-164
AXF96677.1|1361248_1361458_-	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	97.1	7.2e-12
AXF96678.1|1361457_1361616_-	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF96679.1|1361678_1361882_-	spiroplasma plectrovirus-related protein	NA	Q9QTH1	Spiroplasma_phage	82.9	5.4e-12
AXF96680.1|1362013_1362196_-	spiroplasma plectrovirus-related protein	NA	Q9QTH2	Spiroplasma_phage	86.7	3.7e-20
AXF96681.1|1362215_1362437_-	spiroplasma plectrovirus-related protein	NA	Q9QTH4	Spiroplasma_phage	89.0	2.6e-28
AXF96682.1|1362764_1363112_-	spiroplasma plectrovirus-related protein	NA	Q9QTH5	Spiroplasma_phage	97.4	1.6e-59
AXF96683.1|1363586_1364516_-	spiroplasma plectrovirus-related protein	NA	Q9QTH8	Spiroplasma_phage	95.5	2.1e-172
AXF96684.1|1364794_1365226_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	86.0	7.3e-59
AXF96685.1|1365239_1365446_+|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	70.9	3.8e-13
1368002:1368018	attR	AATTGCAATTGTTTTAA	NA	NA	NA	NA
>prophage 23
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1379688	1388089	1791576	integrase,transposase	Spiroplasma_virus(90.0%)	11	1380899:1380935	1383206:1383242
AXF96702.1|1379688_1380630_-|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	31.3	2.6e-24
AXF96703.1|1380768_1381218_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	38.6	5.6e-09
1380899:1380935	attL	CACAACAACCACCAAAAGATAGTAATTGAAAATTAAT	NA	NA	NA	NA
AXF96704.1|1381356_1381575_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96705.1|1381858_1382563_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	88.7	2.1e-111
AXF96706.1|1382683_1382944_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	92.0	6.2e-37
AXF96707.1|1383060_1383498_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	37.0	2.7e-08
1383206:1383242	attR	CACAACAACCACCAAAAGATAGTAATTGAAAATTAAT	NA	NA	NA	NA
AXF96708.1|1383508_1385653_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	84.4	0.0e+00
AXF96709.1|1385664_1385901_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	97.4	2.4e-32
AXF96710.1|1385900_1386278_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.6	1.6e-38
AXF96711.1|1386270_1387284_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	89.3	3.7e-170
AXF96712.1|1387834_1388089_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	88.1	4.1e-33
>prophage 24
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1476098	1485497	1791576	tRNA	Spiroplasma_virus(80.0%)	14	NA	NA
AXF96801.1|1476098_1478516_-|tRNA	leucyl-tRNA synthetase	tRNA	A0A2H4PQS0	Staphylococcus_phage	58.8	1.1e-271
AXF96802.1|1478653_1479292_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
AXF96803.1|1479410_1479749_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96804.1|1480117_1480429_-	thioredoxin	NA	A0A1V0SD63	Indivirus	42.0	1.0e-17
AXF96805.1|1480483_1481293_-	HAD superfamily hydrolase	NA	NA	NA	NA	NA
AXF96806.1|1481842_1482094_+	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	89.2	4.4e-32
AXF96807.1|1482517_1482721_+	hypothetical protein	NA	NA	NA	NA	NA
AXF96808.1|1482784_1483024_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	88.4	3.7e-12
AXF96809.1|1483035_1483272_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	92.3	4.8e-28
AXF96810.1|1483398_1483677_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	93.1	2.7e-38
AXF96811.1|1483669_1484389_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	95.4	7.8e-130
AXF96812.1|1484360_1484690_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	78.4	1.3e-34
AXF96813.1|1484664_1484892_-	spiroplasma plectrovirus-related protein	NA	A8RHJ3	Spiroplasma_virus	96.9	2.7e-28
AXF96814.1|1485044_1485497_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	86.7	5.0e-66
>prophage 25
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1553527	1559085	1791576		Spiroplasma_virus(100.0%)	8	NA	NA
AXF96897.1|1553527_1555387_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	83.5	1.5e-305
AXF96898.1|1555459_1555660_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	93.9	4.9e-26
AXF96899.1|1555671_1555908_-	spiroplasma plectrovirus-related protein	NA	A8RHK0	Spiroplasma_virus	98.7	8.4e-33
AXF96900.1|1555907_1556315_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	97.7	5.5e-40
AXF96901.1|1556298_1557150_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	94.3	1.6e-153
AXF96902.1|1557667_1558117_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	91.3	3.3e-70
AXF96903.1|1558100_1558451_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF96904.1|1558833_1559085_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
>prophage 26
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1564833	1572303	1791576	transposase	Spiroplasma_virus(83.33%)	7	NA	NA
AXF96909.1|1564833_1567566_-	Mg(2+) transport ATPase, P-type	NA	M1HXH2	Paramecium_bursaria_Chlorella_virus	26.3	1.0e-41
AXF96910.1|1568378_1568741_-|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF96911.1|1569234_1569483_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	34.5	3.7e-07
AXF96912.1|1569543_1571196_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	79.7	1.4e-251
AXF96913.1|1571183_1571447_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	82.1	1.0e-26
AXF96914.1|1571498_1571735_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	93.5	3.6e-36
AXF96915.1|1572051_1572303_-	spiroplasma plectrovirus-related protein	NA	A8RHI2	Spiroplasma_virus	90.4	5.2e-33
>prophage 27
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1630184	1635549	1791576	transposase,integrase	Spiroplasma_virus(83.33%)	6	1628541:1628558	1644202:1644219
1628541:1628558	attL	AACATCACCAATTGCTTT	NA	NA	NA	NA
AXF96980.1|1630184_1631273_-|integrase	integrase	integrase	A8RHK4	Spiroplasma_virus	78.9	5.8e-153
AXF96981.1|1631397_1631805_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	48.0	3.9e-17
AXF96982.1|1631816_1633316_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	88.7	9.5e-247
AXF96983.1|1633319_1633589_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	75.6	2.2e-29
AXF96984.1|1633627_1633966_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	91.5	3.0e-47
AXF96985.1|1634565_1635549_-|transposase	transposase of is30 family protein	transposase	Q9MBM9	Staphylococcus_prophage	33.0	4.8e-29
1644202:1644219	attR	AAAGCAATTGGTGATGTT	NA	NA	NA	NA
>prophage 28
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1738639	1747501	1791576	transposase	Spiroplasma_virus(90.0%)	13	NA	NA
AXF97128.1|1738639_1741300_-	cation-transporting ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	31.2	6.5e-73
AXF97129.1|1741601_1741814_-|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF97130.1|1741919_1742315_-|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF97131.1|1742375_1742579_-|transposase	transposase of is30 family protein	transposase	NA	NA	NA	NA
AXF97132.1|1742879_1743137_+	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	78.6	1.5e-06
AXF97133.1|1743151_1743406_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	96.4	5.9e-40
AXF97134.1|1743490_1744303_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	91.9	1.1e-137
AXF97135.1|1744723_1744897_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	61.5	3.6e-09
AXF97136.1|1745134_1745371_-	spiroplasma plectrovirus-related protein	NA	A8RHK2	Spiroplasma_virus	90.2	3.1e-11
AXF97137.1|1745619_1746024_-	spiroplasma plectrovirus-related protein	NA	A8RHJ8	Spiroplasma_virus	92.0	3.0e-38
AXF97138.1|1746007_1746352_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	96.5	1.2e-56
AXF97139.1|1746324_1746894_-	spiroplasma plectrovirus-related protein	NA	A8RHJ5	Spiroplasma_virus	93.3	4.8e-66
AXF97140.1|1747105_1747501_-	spiroplasma plectrovirus-related protein	NA	A8RHI7	Spiroplasma_virus	94.2	1.0e-62
>prophage 29
CP031088	Spiroplasma phoeniceum P40 chromosome, complete genome	1791576	1784390	1789584	1791576		Spiroplasma_phage(100.0%)	14	NA	NA
AXF97184.1|1784390_1785029_-	spiroplasma plectrovirus-related protein	NA	Q3ZVE7	Spiroplasma_phage	51.9	3.9e-56
AXF97185.1|1785108_1785300_-	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	66.7	5.2e-17
AXF97186.1|1785358_1785802_-	spiroplasma plectrovirus-related protein	NA	Q9QTH9	Spiroplasma_phage	61.1	1.3e-42
AXF97187.1|1785817_1786054_-	spiroplasma plectrovirus-related protein	NA	Q9QTI0	Spiroplasma_phage	90.9	5.6e-29
AXF97188.1|1786053_1786419_-	spiroplasma plectrovirus-related protein	NA	Q9QTI1	Spiroplasma_phage	88.5	8.8e-29
AXF97189.1|1786411_1786588_-	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	96.6	1.1e-24
AXF97190.1|1786776_1787136_-	spiroplasma plectrovirus-related protein	NA	Q9QTG8	Spiroplasma_phage	95.0	1.0e-61
AXF97191.1|1787424_1787634_-	spiroplasma plectrovirus-related protein	NA	Q9QTG9	Spiroplasma_phage	62.3	1.1e-07
AXF97192.1|1787633_1787792_-	spiroplasma plectrovirus-related protein	NA	Q9QTH0	Spiroplasma_phage	96.2	2.3e-18
AXF97193.1|1787834_1788059_-	spiroplasma plectrovirus-related protein	NA	NA	NA	NA	NA
AXF97194.1|1788273_1788486_-	hypothetical protein	NA	NA	NA	NA	NA
AXF97195.1|1788499_1788682_-	spiroplasma plectrovirus-related protein	NA	Q9QTH2	Spiroplasma_phage	83.3	2.0e-18
AXF97196.1|1788681_1788909_-	spiroplasma plectrovirus-related protein	NA	Q9QTH4	Spiroplasma_phage	87.5	1.0e-27
AXF97197.1|1789236_1789584_-	spiroplasma plectrovirus-related protein	NA	Q9QTH5	Spiroplasma_phage	96.5	3.8e-58
