The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031092	Ruegeria sp. NKC1-1 chromosome, complete genome	3641602	35302	71221	3641602	head,tail,terminase,integrase,portal,coat	Anoxybacillus_phage(30.3%)	54	34549:34564	74413:74428
34549:34564	attL	TTTGCGTCTTGTTGCA	NA	NA	NA	NA
AXF54586.1|35302_36133_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	31.9	1.8e-13
AXF54587.1|36227_36581_-	XRE family transcriptional regulator	NA	S5MUA5	Brevibacillus_phage	46.5	4.0e-10
AXF54588.1|36738_36963_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXF54589.1|37731_38037_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXF54590.1|38054_38789_+	hypothetical protein	NA	A0A2H4J152	uncultured_Caudovirales_phage	38.3	1.3e-31
AXF54591.1|39013_39220_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54592.1|39330_39621_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54593.1|39617_40100_+	ATPase	NA	E5DV79	Deep-sea_thermophilic_phage	41.1	1.0e-24
AXF54594.1|40112_40799_+	DNA-binding protein	NA	A8ATF0	Listeria_phage	59.0	1.1e-75
AXF54595.1|40779_42111_+	ATP-dependent helicase	NA	Q8W5V9	Listeria_phage	58.8	1.4e-137
AXF54596.1|42126_42627_+	DUF669 domain-containing protein	NA	Q9G0E5	Lactococcus_phage	42.3	4.9e-22
AXF54597.1|42639_44940_+	DNA primase	NA	Q8W5V7	Listeria_phage	56.6	4.7e-253
AXF54598.1|45259_45451_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57788.1|45440_45758_+	VRR-NUC domain-containing protein	NA	A8ATF4	Listeria_phage	58.8	7.9e-26
AXF54599.1|46019_46343_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54600.1|46627_46918_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXF54601.1|46918_47155_+	hypothetical protein	NA	A0A2H4JCC5	uncultured_Caudovirales_phage	61.3	6.9e-19
AXF54602.1|47156_47750_+	HNH endonuclease	NA	M1PKJ5	Streptococcus_phage	28.0	1.4e-15
AXF57789.1|47842_48151_+	DUF1599 domain-containing protein	NA	A0A142F1S9	Bacillus_phage	48.8	7.9e-15
AXF54603.1|48155_48494_+	deaminase	NA	F8WPT6	Bacillus_phage	49.1	4.9e-26
AXF54604.1|48490_48757_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54605.1|48768_49008_+	hypothetical protein	NA	A0A2H4IZN4	uncultured_Caudovirales_phage	41.0	2.3e-09
AXF54606.1|49183_49657_+	SAM-dependent methyltransferase	NA	A8ATY8	Listeria_phage	69.5	5.4e-63
AXF57790.1|49658_50204_+	Holliday junction resolvase RecU	NA	S5MCC4	Brevibacillus_phage	42.9	3.9e-33
AXF54607.1|50206_50386_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54608.1|50385_50769_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54609.1|50765_51035_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54610.1|51167_51392_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54611.1|51726_51918_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57791.1|51952_52120_+	DUF3954 domain-containing protein	NA	NA	NA	NA	NA
AXF54612.1|52129_52357_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54613.1|52716_53169_+	DNA-binding response regulator	NA	A0A2P1JTX0	Anoxybacillus_phage	27.5	3.3e-09
AXF57792.1|53472_54072_+	HNH endonuclease	NA	A0A0N7EMH0	Pseudomonas_phage	45.2	1.2e-38
AXF54614.1|54008_54632_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	43.1	2.2e-16
AXF54615.1|54600_55833_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4J8B0	uncultured_Caudovirales_phage	63.0	5.8e-149
AXF54616.1|55845_57318_+|portal	phage portal protein	portal	A0A2P1JTZ3	Anoxybacillus_phage	59.1	4.6e-145
AXF54617.1|57301_58198_+	hypothetical protein	NA	A0A2P1JTW9	Anoxybacillus_phage	33.8	3.9e-38
AXF54618.1|58219_58441_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54619.1|58850_59510_+	DUF4355 domain-containing protein	NA	A0A2P1JTW7	Anoxybacillus_phage	51.0	6.7e-19
AXF54620.1|59528_60539_+|coat	coat protein	coat	A0A2P1JTX1	Anoxybacillus_phage	76.9	2.3e-148
AXF57793.1|60566_60896_+|head,tail	phage head-tail adapter protein	head,tail	A0A2P1JTX2	Anoxybacillus_phage	48.6	2.3e-20
AXF54621.1|61006_61546_+	endodeoxyribonuclease	NA	E5DV63	Deep-sea_thermophilic_phage	46.6	1.0e-33
AXF54622.1|61632_61908_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	50.6	1.3e-16
AXF54623.1|61910_62258_+	hypothetical protein	NA	A0A097BY98	Enterococcus_phage	29.5	2.6e-06
AXF54624.1|62262_62679_+	hypothetical protein	NA	A0A2P1JTV2	Anoxybacillus_phage	51.1	6.9e-30
AXF57794.1|62776_63292_+|tail	phage major tail protein, TP901-1 family	tail	A0A2P1JTU8	Anoxybacillus_phage	57.9	1.7e-49
AXF54625.1|63384_63786_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57795.1|63920_64133_+	hypothetical protein	NA	A0A2P1JTY6	Anoxybacillus_phage	46.4	3.2e-07
AXF54626.1|64174_68071_+	hypothetical protein	NA	A0A1X9IGH8	Lactococcus_phage	34.4	1.1e-31
AXF54627.1|68077_68860_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54628.1|68871_69546_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54629.1|69545_69752_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54630.1|69799_70045_+	hypothetical protein	NA	NA	NA	NA	NA
AXF54631.1|70378_71221_+|integrase	integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	24.7	4.2e-18
74413:74428	attR	TGCAACAAGACGCAAA	NA	NA	NA	NA
>prophage 2
CP031092	Ruegeria sp. NKC1-1 chromosome, complete genome	3641602	1986190	1991732	3641602		Staphylococcus_phage(66.67%)	6	NA	NA
AXF57950.1|1986190_1986634_-	nucleoside deaminase	NA	A0A0B5J096	Pandoravirus	39.3	2.6e-11
AXF56333.1|1986672_1987149_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	68.9	1.3e-43
AXF56334.1|1987159_1988356_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	53.2	5.3e-115
AXF56335.1|1988355_1989021_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	36.8	4.8e-33
AXF56336.1|1989005_1990067_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	38.8	3.3e-60
AXF56337.1|1990520_1991732_+	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	26.6	1.8e-09
>prophage 3
CP031092	Ruegeria sp. NKC1-1 chromosome, complete genome	3641602	3216823	3240818	3641602	head,tail,capsid,tRNA,protease,terminase,portal,integrase	Caldibacillus_phage(23.08%)	30	3207877:3207893	3229776:3229792
3207877:3207893	attL	GGTCGGTGGTTCGAGTC	NA	NA	NA	NA
AXF57396.1|3216823_3217285_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AXF57397.1|3217281_3217974_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
AXF58034.1|3217997_3218429_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
AXF57398.1|3218444_3219458_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.7	3.0e-63
AXF57399.1|3220046_3221981_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	1.6e-57
AXF57400.1|3222123_3222756_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
AXF57401.1|3222787_3222976_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
AXF57402.1|3222990_3223752_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA	NA
AXF57403.1|3223797_3224001_-	DUF4305 domain-containing protein	NA	NA	NA	NA	NA
AXF57404.1|3223991_3224714_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AXF57405.1|3224987_3225272_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	49.5	3.9e-16
AXF57406.1|3225330_3226974_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.0	4.7e-154
AXF57407.1|3227051_3228239_-|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	50.4	2.5e-96
AXF57408.1|3228256_3228862_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXF57409.1|3229048_3229270_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AXF57410.1|3229272_3229587_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPE8	Staphylococcus_phage	54.8	9.5e-24
AXF57411.1|3229908_3230211_+	hypothetical protein	NA	NA	NA	NA	NA
3229776:3229792	attR	GACTCGAACCACCGACC	NA	NA	NA	NA
AXF57412.1|3230311_3232702_+	DNA primase	NA	A0A1P8BMT9	Lactococcus_phage	46.7	4.3e-108
AXF57413.1|3233078_3233537_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57414.1|3233533_3233725_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57415.1|3233860_3235102_+|portal	phage portal protein	portal	A0A290G4I4	Caldibacillus_phage	34.6	1.3e-55
AXF57416.1|3235046_3235622_+|head,protease	HK97 family phage prohead protease	head,protease	A0A060ANH0	Enterococcus_phage	35.9	9.0e-20
AXF57417.1|3235625_3236855_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
AXF57418.1|3236918_3237194_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
AXF57419.1|3237196_3237487_+	HNH endonuclease	NA	A0A0P0HRY0	Lactobacillus_phage	45.9	6.7e-16
AXF57420.1|3237606_3237954_+	hypothetical protein	NA	A0A290GJQ7	Caldibacillus_phage	39.1	1.4e-15
AXF57421.1|3237953_3239600_+|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	49.0	5.7e-152
AXF57422.1|3239614_3240271_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57423.1|3240276_3240498_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57424.1|3240494_3240818_+|head,tail	head-tail adaptor protein	head,tail	A6M954	Geobacillus_virus	36.9	4.7e-10
>prophage 4
CP031092	Ruegeria sp. NKC1-1 chromosome, complete genome	3641602	3310977	3318573	3641602		Pneumococcus_phage(33.33%)	10	NA	NA
AXF57483.1|3310977_3311763_-	class I SAM-dependent methyltransferase	NA	A0A1B1IS97	uncultured_Mediterranean_phage	29.1	7.7e-06
AXF57484.1|3311874_3312465_+	TIGR00730 family Rossman fold protein	NA	A0A1V0S9E9	Catovirus	30.3	3.9e-10
AXF57485.1|3312559_3312946_+	hypothetical protein	NA	NA	NA	NA	NA
AXF57486.1|3312970_3313693_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	6.8e-65
AXF57487.1|3313692_3314118_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AXF57488.1|3314114_3314837_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	46.7	2.2e-55
AXF57489.1|3314849_3315338_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	63.3	1.4e-45
AXF57490.1|3315578_3315776_-	hypothetical protein	NA	NA	NA	NA	NA
AXF57491.1|3316031_3316883_+	GMC family oxidoreductase	NA	NA	NA	NA	NA
AXF57492.1|3317061_3318573_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.2	5.8e-10
>prophage 5
CP031092	Ruegeria sp. NKC1-1 chromosome, complete genome	3641602	3345616	3353812	3641602		Synechococcus_phage(50.0%)	8	NA	NA
AXF57519.1|3345616_3346909_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.2	3.8e-18
AXF57520.1|3346921_3347632_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	38.7	1.1e-38
AXF57521.1|3347624_3347876_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AXF57522.1|3347872_3348559_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AXF57523.1|3348542_3350765_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.6	1.0e-151
AXF57524.1|3350740_3352159_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	28.9	9.6e-47
AXF57525.1|3352172_3353201_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D8KND6	Synechococcus_phage	43.5	7.1e-68
AXF57526.1|3353197_3353812_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	1.6e-22
