The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP024905	Paraburkholderia caledonica strain PHRS4 chromosome PHRS4_A, complete sequence	3862683	522795	531835	3862683		Hokovirus(16.67%)	7	NA	NA
AXF13387.1|522795_524754_+	molecular chaperone DnaK	NA	A0A1V0SH73	Hokovirus	50.3	2.1e-145
AXF13388.1|525023_526166_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	39.9	2.2e-25
AXF13389.1|526191_528081_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	36.5	1.1e-53
AXF13390.1|528128_528944_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	30.0	1.1e-34
AXF13391.1|528977_529658_-	deoxynucleoside kinase	NA	A0A249XZR7	Enterococcus_phage	27.5	1.5e-05
AXF13392.1|529654_530188_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AXF13393.1|530236_531835_-	polynucleotide adenylyltransferase PcnB	NA	A0A172Q0J1	Acinetobacter_phage	30.1	1.7e-15
>prophage 2
CP024905	Paraburkholderia caledonica strain PHRS4 chromosome PHRS4_A, complete sequence	3862683	740259	748331	3862683		Escherichia_phage(28.57%)	8	NA	NA
AXF13547.1|740259_741171_+	GDP-mannose 4,6 dehydratase	NA	E5ES47	Bathycoccus_sp._RCC1105_virus	25.6	3.9e-09
AXF13548.1|741567_742629_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	46.9	1.1e-84
AXF13549.1|742639_743533_+	glucose-1-phosphate thymidylyltransferase	NA	A0A291LA53	Escherichia_phage	58.5	5.4e-96
AXF13550.1|743517_744069_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	3.6e-50
AXF13551.1|744080_745007_+	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	34.3	5.0e-28
AXF16014.1|745308_746727_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.5	2.7e-57
AXF13552.1|746728_747550_+	ABC transporter permease	NA	NA	NA	NA	NA
AXF13553.1|747554_748331_+	sugar ABC transporter ATP-binding protein	NA	A7IVC2	Paramecium_bursaria_Chlorella_virus	26.9	4.0e-07
>prophage 3
CP024905	Paraburkholderia caledonica strain PHRS4 chromosome PHRS4_A, complete sequence	3862683	3082289	3094694	3862683	protease	Methanothermobacter_phage(12.5%)	11	NA	NA
AXF15307.1|3082289_3083504_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.5	5.5e-43
AXF15308.1|3083580_3084600_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AXF15309.1|3084614_3085061_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	63.9	1.5e-46
AXF15310.1|3085136_3087434_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.5	3.6e-168
AXF15311.1|3087430_3087745_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A218MMY6	uncultured_virus	44.6	5.8e-13
AXF15312.1|3088293_3088500_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	81.8	2.4e-23
AXF15313.1|3088792_3090049_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	64.8	1.2e-11
AXF16212.1|3090379_3090949_+	pseudouridine synthase	NA	NA	NA	NA	NA
AXF15314.1|3091335_3091530_+	hypothetical protein	NA	NA	NA	NA	NA
AXF15315.1|3091674_3092190_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	40.2	4.3e-13
AXF16213.1|3092588_3094694_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.6	2.9e-60
>prophage 1
CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	403765	25623	75248	403765	transposase,integrase	Mycobacterium_phage(28.57%)	52	42237:42296	73404:74633
AXF18764.1|25623_27069_+|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AXF18765.1|27348_27717_-	nitrile hydratase accessory protein	NA	NA	NA	NA	NA
AXF18766.1|27718_28390_-	nitrile hydratase subunit beta	NA	NA	NA	NA	NA
AXF19047.1|28386_29055_-	nitrile hydratase subunit alpha	NA	NA	NA	NA	NA
AXF18767.1|29270_30770_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	31.5	3.4e-34
AXF18768.1|30815_31577_+	transcriptional regulator	NA	NA	NA	NA	NA
AXF18769.1|31753_33199_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AXF18770.1|33316_33772_-	TIGR02594 family protein	NA	A0A2P1JU72	Erwinia_phage	47.4	8.9e-31
AXF18771.1|33768_34509_-	dipeptidase	NA	NA	NA	NA	NA
AXF18772.1|34749_34950_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18773.1|35151_35778_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18774.1|35927_36206_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18775.1|36340_37888_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18776.1|38268_38694_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18777.1|38841_39264_-	hypothetical protein	NA	NA	NA	NA	NA
AXF19048.1|39849_41118_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	32.1	1.6e-29
42237:42296	attL	GGCGCATTCAACCGGTGGATGCAACACACTGAAGACTGCGTAAGCAGCAGGAGTGTTGCA	NA	NA	NA	NA
AXF18778.1|42297_43458_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.9	1.4e-40
AXF18779.1|43492_44719_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18780.1|45557_46250_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18781.1|46267_46528_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18782.1|46777_47152_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18783.1|47197_47794_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18784.1|47832_48084_+	hypothetical protein	NA	NA	NA	NA	NA
AXF19049.1|48108_48582_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18785.1|48728_49688_+|integrase	integrase	integrase	NA	NA	NA	NA
AXF18786.1|49786_50242_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18787.1|50735_51041_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18788.1|51326_51905_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18789.1|51973_52330_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18790.1|52624_52954_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18791.1|53023_53494_+	hypothetical protein	NA	NA	NA	NA	NA
AXF19050.1|53623_53950_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18792.1|54225_54954_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18793.1|55082_55361_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18794.1|55360_55840_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18795.1|56236_56944_+	cell division protein	NA	NA	NA	NA	NA
AXF18796.1|56873_58349_+	DNA polymerase	NA	NA	NA	NA	NA
AXF18797.1|61519_61819_+	DUF2471 domain-containing protein	NA	NA	NA	NA	NA
AXF19051.1|61918_62194_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18798.1|62485_62836_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18799.1|63578_64103_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18800.1|64588_65884_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AXF18801.1|66315_66528_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18802.1|66710_67625_+	Ku protein	NA	A0A218M9C0	Mycobacterium_phage	29.3	1.4e-19
AXF18803.1|67621_68566_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18804.1|68691_68883_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18805.1|69155_70001_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AXF18806.1|70022_70349_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18807.1|70356_70902_-	sugar ABC transporter	NA	NA	NA	NA	NA
AXF18808.1|71068_71962_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	31.4	2.2e-17
AXF18809.1|72241_73402_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	37.9	1.4e-40
AXF18810.1|73754_75248_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
73404:74633	attR	TGCAACACTCCTGCTGCTTACGCAGTCTTCAGTGTGTTGCATCCACCGGTTGAATGCGCCAACGCCTACCTGCCGTTCGCGAGACGCTCGCCAATCGAAGACAAATGACGGTCACGTAGCCGTATCAACCATTGCTGAACTGGCGAGCAGGTCGCTTGAGCGTGAGTGCCATTAGAATCGATGTGCCGACTGGGCAGCGACAATTGTTTTGGCCGGTCGTTGACGATCGTTTTGGCCGGTGGTGAGGAGTCGAAGGCGGCGCAGCCGCCGTAGACGATGAGCCACCGGCGGCGCCAGGTCGACGGGCTTTAGGATGGGCTGATCGAAGCTTGAAGAAGAAGCGGTCAGCTCATGTCTGGAACCCGCATTACCGACCAACAGGTTCATCTCTATATGAACAAGCGCAAACAGCACTCTCAGGAAGTCGCGGCCGCCAAGACCGGTATCAGCGTGCGTACGGCGCGCCGCATCGAACGTGACGCCACCTTGCCATCTCAGAAACCACGGCAAACATGGCGGACCCGAGCTGATCCCTTCGTCGACGTATGGGAGAGCGAAGTCGTACCGCTGCTGCGCAACGCGCCCCACCTGATGGGCATCACGATCCTGCGCAAGCTGCAGGACGATCACCCGGATTGCTATCCCGATAGCATGCGCCGCACGCTGGAGCGGCGTATTCGCCAGTGGCGGGCGCTTGAAGGGCCTACACAGGAGGTGTTCTTCCCCCAGGAGCATCAGCCCGGTGTGCGCGGACTGTCAGACTTCACCGATATGAGCAAGCTTTGCGTGACGATCGGCGGTGCCCCATTCGGTCATCGGCTGTATCACTTCGTACTGGCATTCTCGCGCTGGGAATACGCGAACGTTGTTGAGGGTGGCGAGAGTTTCGAGGCCCTCGCAGCGGGATTGCAGAACGCGCTGTGGCAGGCCGGCGGCTGCCCGCGCGAACATCGCTCTGACAGCCTGTCGGCTGCCTTCAAGAATCTGACAGAGCAGGAGGACTTCACGAAACGTTACTCAGCGCTGCTCGACCATTACGGCATGGAGGGCACGCGCAACAATCGGGGCCTGGGGCACGAGAACGGCAGCGTGGAGTCATCGCATCGGTATCTGAAGGAAGCGGTCGACCAGGCCTTGATGCTTCGCGGTCATCGCGACTTCGCTGACCGGGCCGCCTACGATGAATTTATCCGTGAGGTGGTGATGCGCCGGAACCGGCGCAACGCTGCG	NA	NA	NA	NA
>prophage 2
CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	403765	247964	297239	403765	transposase,holin,integrase	Pandoravirus(50.0%)	40	263352:263368	285302:285318
AXF18939.1|247964_249410_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
AXF18940.1|249639_249903_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18941.1|249899_250322_-	NUDIX hydrolase	NA	NA	NA	NA	NA
AXF18942.1|250485_250707_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18943.1|251333_252932_-	nitroreductase	NA	NA	NA	NA	NA
AXF18944.1|253116_253359_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18945.1|253725_253974_-	hypothetical protein	NA	NA	NA	NA	NA
AXF19062.1|254118_254355_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18946.1|255993_257292_+	iron transporter	NA	NA	NA	NA	NA
AXF18947.1|257300_259034_-	oxidoreductase	NA	NA	NA	NA	NA
AXF18948.1|259192_259375_-	hypothetical protein	NA	NA	NA	NA	NA
AXF19063.1|262613_262811_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18949.1|262807_264289_+	sodium:solute symporter	NA	NA	NA	NA	NA
263352:263368	attL	GCCTGCGCGCCCCGGCG	NA	NA	NA	NA
AXF18950.1|264899_265403_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AXF18951.1|265640_266114_-	cupin	NA	NA	NA	NA	NA
AXF18952.1|266267_266480_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18953.1|267236_268022_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AXF18954.1|268114_268669_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AXF19064.1|269313_270141_+	2-methylisocitrate lyase	NA	NA	NA	NA	NA
AXF18955.1|270584_272030_+	cytochrome P450	NA	S4VQU1	Pandoravirus	26.6	4.6e-20
AXF18956.1|272249_272471_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18957.1|272701_273073_-	hypothetical protein	NA	NA	NA	NA	NA
AXF18958.1|273278_273464_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18959.1|274472_275948_-|transposase	transposase	transposase	NA	NA	NA	NA
AXF18960.1|276132_277614_-|integrase	integrase	integrase	NA	NA	NA	NA
AXF18961.1|277757_279224_-|transposase	transposase	transposase	NA	NA	NA	NA
AXF18962.1|279222_279636_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18963.1|281096_282146_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AXF19065.1|282504_282771_+	post-segregation antitoxin CcdA	NA	NA	NA	NA	NA
AXF18964.1|282770_283091_+	plasmid maintenance protein CcdB	NA	NA	NA	NA	NA
AXF18965.1|284508_284826_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AXF18966.1|284917_285256_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18967.1|285479_285665_-	hypothetical protein	NA	NA	NA	NA	NA
285302:285318	attR	GCCTGCGCGCCCCGGCG	NA	NA	NA	NA
AXF18968.1|285906_286356_+	universal stress protein	NA	NA	NA	NA	NA
AXF18969.1|287741_289985_+	filamentous hemagglutinin	NA	NA	NA	NA	NA
AXF18970.1|291091_292888_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
AXF18971.1|292901_294008_+	mandelate racemase	NA	Q6A202	Oenococcus_phage	23.4	6.2e-17
AXF18972.1|294032_294950_+	hypothetical protein	NA	NA	NA	NA	NA
AXF18973.1|294946_295594_+	gluconate 2-dehydrogenase	NA	NA	NA	NA	NA
AXF18974.1|295583_297239_+|holin	choline dehydrogenase	holin	NA	NA	NA	NA
