assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003325975.1_ASM332597v1	CP030939	Escherichia coli strain AMSHJX01 chromosome, complete genome	1	615675-615792	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	NA,NA|55aa|down_0|CP030939.1_615865_616030_-	NA|115aa|up_9|CP030939.1_603396_603741_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP030939.1_603929_604868_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP030939.1_604966_605956_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP030939.1_605977_607309_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP030939.1_607334_608543_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP030939.1_608576_610871_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP030939.1_610884_611274_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP030939.1_611345_612710_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP030939.1_612984_614316_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP030939.1_614343_615654_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP030939.1_615865_616030_-	NA	NA|234aa|down_1|CP030939.1_616052_616754_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP030939.1_616858_617755_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP030939.1_617805_618162_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|CP030939.1_618403_618769_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|CP030939.1_619061_620048_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|CP030939.1_620117_620600_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|CP030939.1_620695_620995_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|CP030939.1_620984_621389_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|CP030939.1_621391_621697_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCA_003325975.1_ASM332597v1	CP030939	Escherichia coli strain AMSHJX01 chromosome, complete genome	2	1050010-1050648	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	10,10,7	10	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	NA|121aa|up_3|CP030939.1_1046906_1047269_-,NA	NA|745aa|up_9|CP030939.1_1039842_1042077_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|CP030939.1_1042154_1042403_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|CP030939.1_1042402_1042738_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|CP030939.1_1042808_1043600_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|CP030939.1_1043827_1045465_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|CP030939.1_1045552_1046851_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|CP030939.1_1046906_1047269_-	NA	NA|312aa|up_2|CP030939.1_1047304_1048240_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|CP030939.1_1048223_1048826_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|CP030939.1_1048998_1049670_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|122aa|down_0|CP030939.1_1051880_1052246_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|CP030939.1_1052561_1054361_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|CP030939.1_1054360_1056073_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_3|CP030939.1_1056146_1056881_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_4|CP030939.1_1057145_1057298_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|down_5|CP030939.1_1057491_1060191_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_6|CP030939.1_1060288_1061851_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|down_7|CP030939.1_1061847_1062387_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_8|CP030939.1_1062398_1063454_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|CP030939.1_1063464_1064211_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCA_003325975.1_ASM332597v1	CP030939	Escherichia coli strain AMSHJX01 chromosome, complete genome	3	1066150-1067520	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	21,22,22	22	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	NA,NA	NA|245aa|up_9|CP030939.1_1056146_1056881_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|CP030939.1_1057145_1057298_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|CP030939.1_1057491_1060191_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|CP030939.1_1060288_1061851_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|CP030939.1_1061847_1062387_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|CP030939.1_1062398_1063454_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP030939.1_1063464_1064211_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP030939.1_1064192_1064843_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP030939.1_1064839_1065763_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP030939.1_1065759_1066053_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP030939.1_1067601_1068639_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP030939.1_1068890_1069799_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP030939.1_1069800_1071228_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP030939.1_1071227_1071833_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP030939.1_1071882_1072206_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP030939.1_1072399_1072711_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP030939.1_1072729_1073440_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP030939.1_1073439_1073919_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP030939.1_1073915_1074965_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP030939.1_1074945_1075707_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003325975.1_ASM332597v1	CP030939	Escherichia coli strain AMSHJX01 chromosome, complete genome	4	3373261-3373405	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	NA|94aa|up_8|CP030939.1_3367368_3367650_+,NA|113aa|up_5|CP030939.1_3369424_3369763_+,NA|56aa|up_3|CP030939.1_3370303_3370471_+,NA|70aa|down_9|CP030939.1_3384125_3384335_-	NA|64aa|up_9|CP030939.1_3367166_3367358_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_8|CP030939.1_3367368_3367650_+	NA	NA|74aa|up_7|CP030939.1_3367748_3367970_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_6|CP030939.1_3367966_3368218_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|113aa|up_5|CP030939.1_3369424_3369763_+	NA	NA|143aa|up_4|CP030939.1_3369791_3370220_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|CP030939.1_3370303_3370471_+	NA	NA|73aa|up_2|CP030939.1_3370510_3370729_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP030939.1_3370706_3371777_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP030939.1_3371911_3373195_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP030939.1_3373428_3375690_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP030939.1_3375872_3377306_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP030939.1_3377381_3378434_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP030939.1_3378617_3379571_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP030939.1_3379611_3380607_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP030939.1_3380761_3381580_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP030939.1_3381580_3382639_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP030939.1_3382641_3383331_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP030939.1_3383330_3384104_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|CP030939.1_3384125_3384335_-	NA
GCA_003325975.1_ASM332597v1	CP030939	Escherichia coli strain AMSHJX01 chromosome, complete genome	5	3661782-3661878	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4,DEDDh	NA,NA	NA|231aa|up_9|CP030939.1_3653567_3654260_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|CP030939.1_3654479_3655022_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|CP030939.1_3655502_3656369_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|CP030939.1_3656370_3656583_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|CP030939.1_3656690_3657212_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|CP030939.1_3657247_3658633_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|CP030939.1_3658806_3659301_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|CP030939.1_3659303_3660026_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|CP030939.1_3660143_3660653_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|CP030939.1_3660649_3661717_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|CP030939.1_3661921_3662815_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|CP030939.1_3662811_3663627_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|CP030939.1_3663637_3664897_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|CP030939.1_3664906_3666574_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|CP030939.1_3666890_3667940_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|CP030939.1_3667961_3669197_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|CP030939.1_3669207_3669993_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|CP030939.1_3670121_3671267_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|CP030939.1_3671288_3672590_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|CP030939.1_3672646_3674008_-	PRK08044, PRK08044, allantoinase AllB
