assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003325355.1_ASM332535v1	CP030852	Runella sp. HYN0085 plasmid unnamed2, complete sequence	1	30635-30794	1,1	CRISPRCasFinder,PILER-CR	no			Orphan	ATATACATTCATACATGAATGGATATACATTTAT,ATATACATTCATACATGAATGGATATACATTTAT	34,34	0	0	NA	NA	NA:NA	2,2	2	Orphan	csa3,PD-DExK,cas3,DEDDh,Cas9_archaeal,WYL,cas4,cas2,cas1,cas6,cas5,cas7,cas8b8	NA,NA|76aa|down_0|CP030852.1_33120_33348_-,NA|161aa|down_2|CP030852.1_35325_35808_+,NA|62aa|down_4|CP030852.1_36063_36249_+,NA|175aa|down_5|CP030852.1_36494_37019_+	NA|881aa|up_9|CP030852.1_16493_19136_-	TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase domain	NA|281aa|up_8|CP030852.1_19615_20458_-	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain	NA|315aa|up_7|CP030852.1_20472_21417_-	pfam13614, AAA_31, AAA domain	NA|269aa|up_6|CP030852.1_21781_22588_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|263aa|up_5|CP030852.1_23009_23798_-	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|328aa|up_4|CP030852.1_25087_26071_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|456aa|up_3|CP030852.1_26024_27392_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|244aa|up_2|CP030852.1_27388_28120_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|293aa|up_1|CP030852.1_28261_29140_+	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain	NA|398aa|up_0|CP030852.1_29162_30356_-	pfam01051, Rep_3, Initiator Replication protein	NA|76aa|down_0|CP030852.1_33120_33348_-	NA	NA|79aa|down_1|CP030852.1_33400_33637_-	pfam13572, DUF4134, Domain of unknown function (DUF4134)	NA|161aa|down_2|CP030852.1_35325_35808_+	NA	NA|71aa|down_3|CP030852.1_35807_36020_+	PTZ00243, PTZ00243, ABC transporter; Provisional	NA|62aa|down_4|CP030852.1_36063_36249_+	NA	NA|175aa|down_5|CP030852.1_36494_37019_+	NA	NA|82aa|down_6|CP030852.1_38035_38281_-	TIGR03071, couple_hipA, HipA N-terminal domain	NA|68aa|down_7|CP030852.1_38359_38563_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|577aa|down_8|CP030852.1_38675_40406_+	pfam13155, Toprim_2, Toprim-like	NA|187aa|down_9|CP030852.1_41164_41725_-	pfam12833, HTH_18, Helix-turn-helix domain
GCA_003325355.1_ASM332535v1	CP030854	Runella sp. HYN0085 plasmid unnamed4, complete sequence	1	11474-11672	1	PILER-CR	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b8	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b8,WYL	Unclear	AACTATAAGAAAAATCACACTTTTGGAAAAA	31	0	0	NA	NA	NA	2	2	Unclear	csa3,PD-DExK,cas3,DEDDh,Cas9_archaeal,WYL,cas4,cas2,cas1,cas6,cas5,cas7,cas8b8	NA|97aa|up_5|CP030854.1_3274_3565_+,NA|278aa|up_2|CP030854.1_8630_9464_-,NA|106aa|up_1|CP030854.1_10123_10441_-,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|311aa|up_6|CP030854.1_1999_2932_-	PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional	NA|97aa|up_5|CP030854.1_3274_3565_+	NA	NA|511aa|up_4|CP030854.1_3699_5232_-	cd08977, SusD, starch binding outer membrane protein SusD	NA|1103aa|up_3|CP030854.1_5260_8569_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|278aa|up_2|CP030854.1_8630_9464_-	NA	NA|106aa|up_1|CP030854.1_10123_10441_-	NA	NA|220aa|up_0|CP030854.1_10495_11155_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|486aa|down_0|CP030854.1_12115_13573_+	pfam01051, Rep_3, Initiator Replication protein	NA|225aa|down_1|CP030854.1_15726_16401_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|121aa|down_2|CP030854.1_16429_16792_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|168aa|down_3|CP030854.1_16889_17393_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas4|191aa|down_4|CP030854.1_20540_21113_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas2|97aa|down_5|CP030854.1_21112_21403_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_6|CP030854.1_21448_22438_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas6|222aa|down_7|CP030854.1_22660_23326_-	pfam17955, Cas6b_N, Cas6b N-terminal domain	cas3|786aa|down_8|CP030854.1_23337_25695_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|236aa|down_9|CP030854.1_25691_26399_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP
GCA_003325355.1_ASM332535v1	CP030854	Runella sp. HYN0085 plasmid unnamed4, complete sequence	2	15262-15687	1,2,1	CRT,PILER-CR,CRISPRCasFinder	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b8,WYL	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b8,WYL	Unclear	ATTTCAATTCCACTGAGGTACGATTAAGGG,ATTTCAATTCCACTGAGGTACGATTAAGGG,ATTTCAATTCCACTGAGGTACGATTAAG	30,30,28	0	0	NA	NA	NA:NA:NA	6,5,5	6	Unclear	csa3,PD-DExK,cas3,DEDDh,Cas9_archaeal,WYL,cas4,cas2,cas1,cas6,cas5,cas7,cas8b8	NA|97aa|up_6|CP030854.1_3274_3565_+,NA|278aa|up_3|CP030854.1_8630_9464_-,NA|106aa|up_2|CP030854.1_10123_10441_-,NA	NA|NA	NA	NA|NA	NA	NA|311aa|up_7|CP030854.1_1999_2932_-	PRK14571, PRK14571, D-alanyl-alanine synthetase A; Provisional	NA|97aa|up_6|CP030854.1_3274_3565_+	NA	NA|511aa|up_5|CP030854.1_3699_5232_-	cd08977, SusD, starch binding outer membrane protein SusD	NA|1103aa|up_4|CP030854.1_5260_8569_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|278aa|up_3|CP030854.1_8630_9464_-	NA	NA|106aa|up_2|CP030854.1_10123_10441_-	NA	NA|220aa|up_1|CP030854.1_10495_11155_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|486aa|up_0|CP030854.1_12115_13573_+	pfam01051, Rep_3, Initiator Replication protein	NA|225aa|down_0|CP030854.1_15726_16401_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|121aa|down_1|CP030854.1_16429_16792_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|168aa|down_2|CP030854.1_16889_17393_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas4|191aa|down_3|CP030854.1_20540_21113_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas2|97aa|down_4|CP030854.1_21112_21403_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_5|CP030854.1_21448_22438_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas6|222aa|down_6|CP030854.1_22660_23326_-	pfam17955, Cas6b_N, Cas6b N-terminal domain	cas3|786aa|down_7|CP030854.1_23337_25695_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|236aa|down_8|CP030854.1_25691_26399_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|295aa|down_9|CP030854.1_26411_27296_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7
GCA_003325355.1_ASM332535v1	CP030854	Runella sp. HYN0085 plasmid unnamed4, complete sequence	3	17500-20334	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b8,WYL	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b8,WYL	Unclear	GTTTCAATCCTTATTCTGCTGGAATGTGCTCTGAAAG,GTTTCAATCCTTATTCTGCTGGAATGTGCTCTGAAAG,GTTTCAATCCTTATTCTGCTGGAATGTGCTCTGAAAG	37,37,37	0	0	NA	NA	I-B:I-B:I-B	38,38,38	38	Unclear	csa3,PD-DExK,cas3,DEDDh,Cas9_archaeal,WYL,cas4,cas2,cas1,cas6,cas5,cas7,cas8b8	NA|97aa|up_9|CP030854.1_3274_3565_+,NA|278aa|up_6|CP030854.1_8630_9464_-,NA|106aa|up_5|CP030854.1_10123_10441_-,cas8b8|589aa|down_7|CP030854.1_27292_29059_-	NA|97aa|up_9|CP030854.1_3274_3565_+	NA	NA|511aa|up_8|CP030854.1_3699_5232_-	cd08977, SusD, starch binding outer membrane protein SusD	NA|1103aa|up_7|CP030854.1_5260_8569_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|278aa|up_6|CP030854.1_8630_9464_-	NA	NA|106aa|up_5|CP030854.1_10123_10441_-	NA	NA|220aa|up_4|CP030854.1_10495_11155_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|486aa|up_3|CP030854.1_12115_13573_+	pfam01051, Rep_3, Initiator Replication protein	NA|225aa|up_2|CP030854.1_15726_16401_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|121aa|up_1|CP030854.1_16429_16792_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|168aa|up_0|CP030854.1_16889_17393_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas4|191aa|down_0|CP030854.1_20540_21113_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas2|97aa|down_1|CP030854.1_21112_21403_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_2|CP030854.1_21448_22438_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas6|222aa|down_3|CP030854.1_22660_23326_-	pfam17955, Cas6b_N, Cas6b N-terminal domain	cas3|786aa|down_4|CP030854.1_23337_25695_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|236aa|down_5|CP030854.1_25691_26399_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|295aa|down_6|CP030854.1_26411_27296_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b8|589aa|down_7|CP030854.1_27292_29059_-	NA	NA|395aa|down_8|CP030854.1_29781_30966_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	WYL|303aa|down_9|CP030854.1_31057_31966_-	pfam13280, WYL, WYL domain
