assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003325255.1_ASM332525v1	CP030225	Salmonella enterica strain SA20041605 chromosome, complete genome	2	173305-173386	2	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DinG	Orphan	GATGGCGCTGCGCTTATCGGGCCTAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DinG	NA|70aa|up_8|CP030225.1_162033_162243_+,NA	NA|121aa|up_9|CP030225.1_161381_161744_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|70aa|up_8|CP030225.1_162033_162243_+	NA	NA|197aa|up_7|CP030225.1_162252_162843_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|up_6|CP030225.1_162839_163988_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|638aa|up_5|CP030225.1_164116_166030_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|203aa|up_4|CP030225.1_166505_167114_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_3|CP030225.1_167212_168604_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_2|CP030225.1_168600_170451_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|294aa|up_1|CP030225.1_170698_171580_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|513aa|up_0|CP030225.1_171748_173287_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|652aa|down_0|CP030225.1_173460_175416_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_1|CP030225.1_175679_176495_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|232aa|down_2|CP030225.1_176655_177351_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_3|CP030225.1_177344_178205_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|217aa|down_4|CP030225.1_178209_178860_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|499aa|down_5|CP030225.1_178856_180353_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_6|CP030225.1_180356_181343_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|426aa|down_7|CP030225.1_181354_182632_-	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|158aa|down_8|CP030225.1_182634_183108_-	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|311aa|down_9|CP030225.1_183246_184179_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)
GCA_003325255.1_ASM332525v1	CP030225	Salmonella enterica strain SA20041605 chromosome, complete genome	4	971838-973513	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,27,27	27	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DinG	NA,NA|57aa|down_1|CP030225.1_974787_974958_+,NA|73aa|down_4|CP030225.1_978750_978969_-	NA|179aa|up_9|CP030225.1_960386_960923_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP030225.1_960919_961390_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP030225.1_961404_961911_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP030225.1_961930_962704_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP030225.1_962716_965416_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP030225.1_965496_966084_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP030225.1_966687_967488_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP030225.1_967715_969353_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP030225.1_969435_970734_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP030225.1_970869_971541_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|CP030225.1_974496_974859_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_1|CP030225.1_974787_974958_+	NA	NA|600aa|down_2|CP030225.1_975282_977082_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|CP030225.1_977081_978794_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|down_4|CP030225.1_978750_978969_-	NA	NA|245aa|down_5|CP030225.1_978895_979630_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP030225.1_979842_980796_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_7|CP030225.1_981239_983903_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_8|CP030225.1_983914_985471_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_9|CP030225.1_985467_986028_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_003325255.1_ASM332525v1	CP030225	Salmonella enterica strain SA20041605 chromosome, complete genome	5	989796-991534	2,5,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	26,28,28,26	28	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DinG	NA,NA	NA|245aa|up_9|CP030225.1_978895_979630_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP030225.1_979842_980796_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP030225.1_981239_983903_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP030225.1_983914_985471_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP030225.1_985467_986028_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP030225.1_986041_987100_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP030225.1_987110_987857_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP030225.1_987838_988489_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP030225.1_988485_989406_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP030225.1_989405_989699_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP030225.1_991548_992595_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP030225.1_992845_993754_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP030225.1_993763_995203_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP030225.1_995189_995795_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP030225.1_995812_996169_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP030225.1_996359_996671_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP030225.1_996689_997400_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP030225.1_997399_997879_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP030225.1_997875_998925_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP030225.1_998905_999667_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
