assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003325095.1_ASM332509v1	CP030196	Salmonella enterica strain SA20051401 chromosome, complete genome	2	640974-641222	1	PILER-CR	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	53	1	1	641141-641203	CP030196.1_641223-641285	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA|84aa|down_0|CP030196.1_641459_641711_-,NA|55aa|down_9|CP030196.1_653476_653641_-	NA|269aa|up_9|CP030196.1_629193_630000_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|476aa|up_8|CP030196.1_629986_631414_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|305aa|up_7|CP030196.1_631440_632355_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|285aa|up_6|CP030196.1_632365_633220_-	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|278aa|up_5|CP030196.1_633553_634387_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|316aa|up_4|CP030196.1_634397_635345_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|524aa|up_3|CP030196.1_635584_637156_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|CP030196.1_637685_638456_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP030196.1_638481_639372_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP030196.1_639469_640615_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|84aa|down_0|CP030196.1_641459_641711_-	NA	NA|313aa|down_1|CP030196.1_641965_642904_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_2|CP030196.1_643001_643991_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_3|CP030196.1_644011_645343_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_4|CP030196.1_645409_646618_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_5|CP030196.1_646651_648946_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_6|CP030196.1_649015_650380_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_7|CP030196.1_650696_652028_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_8|CP030196.1_652053_653364_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_9|CP030196.1_653476_653641_-	NA
GCA_003325095.1_ASM332509v1	CP030196	Salmonella enterica strain SA20051401 chromosome, complete genome	3	1002635-1003823	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA|57aa|down_2|CP030196.1_1005096_1005267_+,NA|73aa|down_5|CP030196.1_1009059_1009278_-,NA|81aa|down_7|CP030196.1_1009827_1010070_-	NA|381aa|up_9|CP030196.1_988432_989575_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP030196.1_989618_992375_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP030196.1_992432_993728_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP030196.1_993779_996014_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP030196.1_996098_996455_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP030196.1_996420_996717_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP030196.1_997484_998285_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP030196.1_998512_1000150_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP030196.1_1000232_1001531_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP030196.1_1001666_1002338_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP030196.1_1003920_1004718_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP030196.1_1004805_1005168_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP030196.1_1005096_1005267_+	NA	NA|600aa|down_3|CP030196.1_1005591_1007391_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP030196.1_1007390_1009103_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|down_5|CP030196.1_1009059_1009278_-	NA	NA|245aa|down_6|CP030196.1_1009204_1009939_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_7|CP030196.1_1009827_1010070_-	NA	NA|318aa|down_8|CP030196.1_1010151_1011105_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|887aa|down_9|CP030196.1_1011547_1014208_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCA_003325095.1_ASM332509v1	CP030196	Salmonella enterica strain SA20051401 chromosome, complete genome	4	1020577-1021764	3,3,2,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	18,19,19,18	19	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|81aa|up_9|CP030196.1_1009827_1010070_-,NA	NA|81aa|up_9|CP030196.1_1009827_1010070_-	NA	NA|318aa|up_8|CP030196.1_1010151_1011105_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|887aa|up_7|CP030196.1_1011547_1014208_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP030196.1_1014701_1016258_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_5|CP030196.1_1016254_1016809_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP030196.1_1016822_1017881_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP030196.1_1017891_1018638_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP030196.1_1018619_1019270_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP030196.1_1019266_1020187_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP030196.1_1020186_1020480_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP030196.1_1021778_1022825_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP030196.1_1023075_1023984_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP030196.1_1023993_1025433_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP030196.1_1025419_1026025_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP030196.1_1026042_1026399_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP030196.1_1026589_1026901_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP030196.1_1026919_1027630_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP030196.1_1027629_1028109_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP030196.1_1028105_1029155_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP030196.1_1029135_1029897_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
