The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030231	Salmonella enterica strain SA20043041 chromosome, complete genome	4603878	765695	783543	4603878	plate,tail	Burkholderia_phage(52.94%)	23	NA	NA
AXD84828.1|765695_766424_-	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
AXD88384.1|767002_767419_-	serine acetyltransferase	NA	NA	NA	NA	NA
AXD84829.1|767795_768251_-	hypothetical protein	NA	NA	NA	NA	NA
AXD84830.1|768247_768862_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AXD84831.1|768867_770622_-|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
AXD84832.1|770624_771257_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	54.7	3.3e-23
AXD84833.1|771249_772365_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.0	9.0e-101
AXD84834.1|772355_772715_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AXD84835.1|772813_773536_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
AXD84836.1|773545_774589_-	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	3.2e-76
AXD84837.1|774576_774786_-	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AXD84838.1|774785_775739_-	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	52.3	3.5e-37
AXD84839.1|775738_778093_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
AXD84840.1|778189_778318_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AXD84841.1|778277_778595_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXD84842.1|778646_779171_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AXD84843.1|779170_780598_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.7	8.9e-194
AXD84844.1|780587_780785_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AXD84845.1|780781_781237_-	hypothetical protein	NA	NA	NA	NA	NA
AXD84846.1|781396_781711_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AXD84847.1|781723_782329_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	60.4	8.4e-61
AXD84848.1|782331_782619_-	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
AXD84849.1|783195_783543_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 2
CP030231	Salmonella enterica strain SA20043041 chromosome, complete genome	4603878	2144729	2153686	4603878	transposase,protease,integrase	Dickeya_phage(14.29%)	9	2145980:2145994	2158917:2158931
AXD86062.1|2144729_2145848_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
AXD86063.1|2145844_2147791_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.0	1.6e-39
2145980:2145994	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AXD86064.1|2147771_2147966_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86065.1|2147920_2148142_-	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXD86066.1|2148465_2148786_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AXD86067.1|2148816_2151093_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AXD86068.1|2151304_2151502_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86069.1|2151663_2152041_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	39.3	8.5e-19
AXD86070.1|2152430_2153686_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	4.8e-18
2158917:2158931	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 3
CP030231	Salmonella enterica strain SA20043041 chromosome, complete genome	4603878	2399738	2419727	4603878	transposase,holin,integrase	Salmonella_phage(24.0%)	32	2391240:2391254	2414700:2414714
2391240:2391254	attL	CGGCAAATGTCATTT	NA	NA	NA	NA
AXD86300.1|2399738_2400989_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
AXD86301.1|2401102_2402245_-|integrase	integrase	integrase	O21929	Phage_21	80.0	8.2e-174
AXD86302.1|2402234_2402471_-	excisionase	NA	NA	NA	NA	NA
AXD86303.1|2402520_2403024_-	Eaa protein	NA	A0A075B8H2	Enterobacteria_phage	92.3	6.0e-36
AXD86304.1|2403020_2403353_-	hypothetical protein	NA	S4TNP2	Salmonella_phage	81.8	8.8e-20
AXD86305.1|2403345_2403666_-	hypothetical protein	NA	A0A222YY67	Escherichia_phage	60.2	3.6e-34
AXD86306.1|2403701_2404532_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.0e-104
AXD86307.1|2404524_2407215_-	exodeoxyribonuclease VIII	NA	Q9QF34	Lambdoid_phage	75.3	9.1e-115
AXD86308.1|2407355_2407691_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86309.1|2407765_2408050_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
AXD86310.1|2408431_2408587_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	55.3	4.7e-08
AXD86311.1|2408895_2409321_-	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	9.3e-14
AXD86312.1|2409416_2409671_+	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	60.9	5.3e-17
AXD86313.1|2409657_2410176_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86314.1|2410185_2411193_+	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.8	6.2e-125
AXD86315.1|2411185_2411647_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.8e-67
AXD86316.1|2411659_2412055_+	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
AXD86317.1|2412377_2412581_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86318.1|2412484_2412976_+	DUF1076 domain-containing protein	NA	B6DZB9	Enterobacteria_phage	51.5	9.7e-23
AXD88448.1|2413313_2413562_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86319.1|2413625_2414228_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	70.4	1.1e-79
AXD86320.1|2414227_2414434_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AXD86321.1|2414436_2415048_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	97.5	1.2e-91
2414700:2414714	attR	AAATGACATTTGCCG	NA	NA	NA	NA
AXD86322.1|2415044_2415191_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
AXD86323.1|2415180_2415978_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	4.0e-151
AXD86324.1|2416376_2416502_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86325.1|2416637_2417087_-	lipoprotein	NA	NA	NA	NA	NA
AXD88449.1|2417303_2417693_+	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	70.2	3.1e-40
AXD86326.1|2417679_2417961_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	79.6	1.7e-35
AXD86327.1|2417960_2418575_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	92.6	1.2e-107
AXD86328.1|2418571_2419111_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	38.4	2.5e-08
AXD86329.1|2419268_2419727_+|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
>prophage 4
CP030231	Salmonella enterica strain SA20043041 chromosome, complete genome	4603878	3038394	3084026	4603878	transposase,protease,integrase,tail	Enterobacteria_phage(23.08%)	50	3031466:3031481	3069465:3069480
3031466:3031481	attL	ATAGCGCTTCGCTGCC	NA	NA	NA	NA
AXD86936.1|3038394_3039276_-|protease	protease HtpX	protease	NA	NA	NA	NA
AXD86937.1|3039469_3041518_-|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AXD86938.1|3041537_3042224_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
AXD86939.1|3042321_3042906_-	GAF domain-containing protein	NA	NA	NA	NA	NA
AXD86940.1|3042947_3044231_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
AXD86941.1|3044193_3046833_+	MCE family protein	NA	NA	NA	NA	NA
AXD88475.1|3046910_3048350_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AXD86942.1|3048464_3048704_+	DUF1480 family protein	NA	NA	NA	NA	NA
AXD86943.1|3048814_3049006_+	DUF1482 family protein	NA	NA	NA	NA	NA
AXD86944.1|3049024_3049675_-	serine/threonine-protein phosphatase 1	NA	A0A222YWF0	Escherichia_phage	51.4	1.1e-58
AXD86945.1|3049898_3050063_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86946.1|3050347_3051070_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AXD86947.1|3051753_3052149_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	33.6	8.3e-17
AXD86948.1|3052478_3052955_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86949.1|3053327_3053747_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AXD86950.1|3053875_3054070_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86951.1|3054116_3054386_+	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
AXD86952.1|3054551_3054692_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86953.1|3056156_3056525_+|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	40.7	5.4e-18
AXD88476.1|3056790_3056991_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86954.1|3057608_3058523_+	protein PagO	NA	NA	NA	NA	NA
AXD86955.1|3058655_3058814_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86956.1|3058823_3059438_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AXD86957.1|3060587_3060713_-	arsenic transporter	NA	NA	NA	NA	NA
AXD86958.1|3060975_3061092_+|tail	phage tail protein	tail	NA	NA	NA	NA
AXD86959.1|3061282_3061483_+	phage virulence factor	NA	NA	NA	NA	NA
AXD86960.1|3062932_3063121_+	hypothetical protein	NA	NA	NA	NA	NA
AXD86961.1|3063185_3063353_+	lytic enzyme	NA	NA	NA	NA	NA
AXD86962.1|3063609_3064143_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	43.0	5.4e-11
AXD86963.1|3064196_3064427_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
AXD86964.1|3064457_3065564_+	exodeoxyribonuclease 8	NA	Q9QF34	Lambdoid_phage	66.7	1.5e-55
AXD86965.1|3065560_3066640_+|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.8	8.2e-99
AXD88477.1|3066836_3066956_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86966.1|3067013_3067367_-	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AXD86967.1|3067383_3068259_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86968.1|3068259_3068634_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AXD86969.1|3068771_3069002_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AXD86970.1|3069109_3069766_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
3069465:3069480	attR	GGCAGCGAAGCGCTAT	NA	NA	NA	NA
AXD86971.1|3069789_3070488_+	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
AXD86972.1|3070522_3072574_-	oligopeptidase B	NA	NA	NA	NA	NA
AXD86973.1|3072786_3073446_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AXD86974.1|3073539_3073893_-	hypothetical protein	NA	NA	NA	NA	NA
AXD86975.1|3073960_3074251_-	damage-inducible protein YebG	NA	NA	NA	NA	NA
AXD86976.1|3074381_3075560_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AXD86977.1|3075659_3076301_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
AXD86978.1|3076338_3078150_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AXD86979.1|3078384_3079860_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
AXD86980.1|3080201_3081071_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AXD86981.1|3081194_3082637_+	pyruvate kinase II	NA	NA	NA	NA	NA
AXD86982.1|3082771_3084026_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	4.8e-18
>prophage 5
CP030231	Salmonella enterica strain SA20043041 chromosome, complete genome	4603878	3172970	3183570	4603878		Morganella_phage(25.0%)	13	NA	NA
AXD87078.1|3172970_3174401_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AXD87079.1|3174474_3175170_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AXD87080.1|3175249_3175561_-	hypothetical protein	NA	NA	NA	NA	NA
AXD87081.1|3176211_3177405_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.3	1.0e-110
AXD88481.1|3177663_3177852_-	cold-shock protein	NA	NA	NA	NA	NA
AXD87082.1|3177862_3178075_-	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AXD87083.1|3178529_3179798_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.7	1.0e-225
AXD87084.1|3179800_3180220_-	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AXD87085.1|3180346_3180508_-	hypothetical protein	NA	NA	NA	NA	NA
AXD87086.1|3180988_3181786_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
AXD87087.1|3182157_3182448_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	50.9	2.3e-08
AXD87088.1|3182936_3183125_-	hypothetical protein	NA	NA	NA	NA	NA
AXD87089.1|3183096_3183570_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
>prophage 6
CP030231	Salmonella enterica strain SA20043041 chromosome, complete genome	4603878	3347449	3356620	4603878	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AXD87227.1|3347449_3349483_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
AXD87228.1|3349723_3350182_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AXD87229.1|3350353_3350884_+	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AXD87230.1|3350940_3351408_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AXD87231.1|3351454_3352174_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AXD87232.1|3352170_3353856_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AXD87233.1|3354078_3354810_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AXD87234.1|3354869_3354977_+	hypothetical protein	NA	NA	NA	NA	NA
AXD87235.1|3354957_3355689_-	ABC transporter permease	NA	NA	NA	NA	NA
AXD87236.1|3355672_3356620_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
