assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003324815.1_ASM332481v1	CP029995	Salmonella enterica subsp. enterica strain SA20053897 chromosome, complete genome	2	1019160-1020349	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACC	29,29,28	9	9	1019250-1019281|1019311-1019342|1019372-1019403|1019433-1019464|1020289-1020320|1019249-1019281|1019310-1019342|1019371-1019403|1019432-1019464	CP029995.1_1271039-1271070|CP029995.1_1283304-1283335|CP029995.1_1294879-1294910|CP029995.1_1306146-1306177|CP029995.1_854268-854237|CP029995.1_1271038-1271070|CP029995.1_1283303-1283335|CP029995.1_1294878-1294910|CP029995.1_1306145-1306177	I-E:I-E:I-E	19,19,17	19	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP029995.1_1021624_1021795_+,NA|70aa|down_3|CP029995.1_1021917_1022127_+	NA|447aa|up_9|CP029995.1_1003553_1004894_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|CP029995.1_1004914_1006255_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|CP029995.1_1006332_1007475_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|CP029995.1_1007547_1010304_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|CP029995.1_1010361_1011657_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|CP029995.1_1011708_1013943_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|CP029995.1_1014017_1014809_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP029995.1_1015036_1016674_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP029995.1_1016756_1018055_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP029995.1_1018191_1018863_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP029995.1_1020446_1021244_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP029995.1_1021333_1021696_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP029995.1_1021624_1021795_+	NA	NA|70aa|down_3|CP029995.1_1021917_1022127_+	NA	NA|600aa|down_4|CP029995.1_1022123_1023923_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_5|CP029995.1_1023922_1025635_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_6|CP029995.1_1025650_1026385_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_7|CP029995.1_1026472_1027426_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|898aa|down_8|CP029995.1_1027809_1030503_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_9|CP029995.1_1030670_1030970_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_003324815.1_ASM332481v1	CP029995	Salmonella enterica subsp. enterica strain SA20053897 chromosome, complete genome	3	1037648-1039750	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	3	3	1038043-1038074|1038348-1038379|1038592-1038623	CP029995.1_1411487-1411518|CP029995.1_1271645-1271676|CP029995.1_1277741-1277710	I-E:I-E	34,34	34	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	cas3|898aa|up_9|CP029995.1_1027809_1030503_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|CP029995.1_1030670_1030970_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|CP029995.1_1030979_1031321_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|CP029995.1_1031675_1033211_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP029995.1_1033227_1033830_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP029995.1_1033846_1034911_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP029995.1_1034920_1035646_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP029995.1_1035645_1036350_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP029995.1_1036349_1037267_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP029995.1_1037269_1037563_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP029995.1_1039764_1040811_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP029995.1_1041062_1041971_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP029995.1_1041980_1043420_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP029995.1_1043406_1044012_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP029995.1_1044029_1044386_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP029995.1_1044576_1044888_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP029995.1_1044906_1045617_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP029995.1_1045616_1046096_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP029995.1_1046092_1047142_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP029995.1_1047122_1047884_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_003324815.1_ASM332481v1	CP029995	Salmonella enterica subsp. enterica strain SA20053897 chromosome, complete genome	5	2239701-2240097	5,2,3	CRISPRCasFinder,PILER-CR,CRT	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	CGTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,6	6	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|62aa|up_5|CP029995.1_2230579_2230765_+,NA	NA|118aa|up_9|CP029995.1_2226119_2226473_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|461aa|up_8|CP029995.1_2226691_2228074_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_7|CP029995.1_2228074_2228725_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_6|CP029995.1_2228717_2230514_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|62aa|up_5|CP029995.1_2230579_2230765_+	NA	NA|466aa|up_4|CP029995.1_2230852_2232250_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|1248aa|up_3|CP029995.1_2232635_2236379_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|CP029995.1_2236375_2237911_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|CP029995.1_2237907_2238618_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|CP029995.1_2238617_2239295_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|CP029995.1_2240837_2241680_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|CP029995.1_2241730_2242189_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|302aa|down_2|CP029995.1_2242299_2243205_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|CP029995.1_2243295_2244309_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|CP029995.1_2244511_2245420_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|CP029995.1_2245552_2245966_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|CP029995.1_2246628_2247246_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|CP029995.1_2247440_2250119_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|CP029995.1_2250595_2251243_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|583aa|down_9|CP029995.1_2251890_2253639_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional
