assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003324755.1_ASM332475v1	CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	1	4228571-4232686	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,cas3,DEDDh,DinG,csa3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29	1	1	4229515-4229546	CP029989.1_1554743-1554774	I-E:I-E:I-E:I-E	67,67,54,54	67	TypeI-E	cas14j,cas3,DEDDh,DinG,csa3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA	NA|209aa|up_9|CP029989.1_4219816_4220443_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|CP029989.1_4220436_4221198_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|CP029989.1_4221178_4222228_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|CP029989.1_4222224_4222704_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_5|CP029989.1_4222703_4223414_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_4|CP029989.1_4223432_4223744_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_3|CP029989.1_4223934_4224291_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_2|CP029989.1_4224308_4224914_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_1|CP029989.1_4224900_4226340_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_0|CP029989.1_4226349_4227258_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	cas2|98aa|down_0|CP029989.1_4232782_4233076_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP029989.1_4233075_4233996_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP029989.1_4233992_4234643_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP029989.1_4234624_4235371_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP029989.1_4235381_4236437_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP029989.1_4236450_4236987_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|CP029989.1_4236983_4238540_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|CP029989.1_4238551_4241215_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|CP029989.1_4241654_4242608_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|CP029989.1_4242695_4243430_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003324755.1_ASM332475v1	CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	2	4513045-4513196	2	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	cas14j,cas3,DEDDh,DinG,csa3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC	29	0	0	NA	NA	I-E	2	2	TypeI-E	cas14j,cas3,DEDDh,DinG,csa3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA|107aa|up_9|CP029989.1_4500967_4501288_-,NA|76aa|up_2|CP029989.1_4510487_4510715_+,NA|79aa|up_1|CP029989.1_4511212_4511449_+,NA	NA|107aa|up_9|CP029989.1_4500967_4501288_-	NA	NA|339aa|up_8|CP029989.1_4501559_4502576_+	pfam04173, DoxD, TQO small subunit DoxD	NA|191aa|up_7|CP029989.1_4503390_4503963_-	PRK10659, PRK10659, acetate uptake transporter	NA|445aa|up_6|CP029989.1_4504965_4506300_+	TIGR04298, hypothetical_protein_HMPREF9690_04798, histidine-histamine antiporter	NA|381aa|up_5|CP029989.1_4506315_4507458_+	PRK02769, PRK02769, histidine decarboxylase; Provisional	NA|462aa|up_4|CP029989.1_4507539_4508925_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|264aa|up_3|CP029989.1_4508924_4509716_+	PRK03601, PRK03601, HTH-type transcriptional regulator HdfR	NA|76aa|up_2|CP029989.1_4510487_4510715_+	NA	NA|79aa|up_1|CP029989.1_4511212_4511449_+	NA	NA|166aa|up_0|CP029989.1_4511821_4512319_-	PRK10304, PRK10304, non-heme ferritin	cas2|98aa|down_0|CP029989.1_4515773_4516067_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP029989.1_4516066_4516987_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP029989.1_4516983_4517634_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP029989.1_4517615_4518362_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP029989.1_4518372_4519428_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP029989.1_4519441_4519978_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|CP029989.1_4519974_4521531_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|140aa|down_7|CP029989.1_4521971_4522391_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|420aa|down_8|CP029989.1_4522565_4523825_-	pfam14890, Intein_splicing, Intein splicing domain	NA|211aa|down_9|CP029989.1_4524019_4524652_-	pfam14090, HTH_39, Helix-turn-helix domain
GCA_003324755.1_ASM332475v1	CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	3	4513269-4515677	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	cas14j,cas3,DEDDh,DinG,csa3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	1	1	4513847-4513878	CP029989.1_1562409-1562378	I-E:I-E:I-E	39,39,39	39	TypeI-E	cas14j,cas3,DEDDh,DinG,csa3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA|107aa|up_9|CP029989.1_4500967_4501288_-,NA|76aa|up_2|CP029989.1_4510487_4510715_+,NA|79aa|up_1|CP029989.1_4511212_4511449_+,NA	NA|107aa|up_9|CP029989.1_4500967_4501288_-	NA	NA|339aa|up_8|CP029989.1_4501559_4502576_+	pfam04173, DoxD, TQO small subunit DoxD	NA|191aa|up_7|CP029989.1_4503390_4503963_-	PRK10659, PRK10659, acetate uptake transporter	NA|445aa|up_6|CP029989.1_4504965_4506300_+	TIGR04298, hypothetical_protein_HMPREF9690_04798, histidine-histamine antiporter	NA|381aa|up_5|CP029989.1_4506315_4507458_+	PRK02769, PRK02769, histidine decarboxylase; Provisional	NA|462aa|up_4|CP029989.1_4507539_4508925_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|264aa|up_3|CP029989.1_4508924_4509716_+	PRK03601, PRK03601, HTH-type transcriptional regulator HdfR	NA|76aa|up_2|CP029989.1_4510487_4510715_+	NA	NA|79aa|up_1|CP029989.1_4511212_4511449_+	NA	NA|166aa|up_0|CP029989.1_4511821_4512319_-	PRK10304, PRK10304, non-heme ferritin	cas2|98aa|down_0|CP029989.1_4515773_4516067_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|CP029989.1_4516066_4516987_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP029989.1_4516983_4517634_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP029989.1_4517615_4518362_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP029989.1_4518372_4519428_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP029989.1_4519441_4519978_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|CP029989.1_4519974_4521531_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|140aa|down_7|CP029989.1_4521971_4522391_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|420aa|down_8|CP029989.1_4522565_4523825_-	pfam14890, Intein_splicing, Intein splicing domain	NA|211aa|down_9|CP029989.1_4524019_4524652_-	pfam14090, HTH_39, Helix-turn-helix domain
