The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	5361355	1519303	1592375	5361355	lysis,tRNA,head,capsid,portal,tail,integrase,terminase	Enterobacteria_phage(34.15%)	73	1544586:1544602	1598860:1598876
AXC71479.1|1519303_1520728_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AXC71480.1|1520871_1522047_+	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA	NA
AXC71481.1|1523220_1524885_-	asparagine synthase B	NA	A9YVS6	Ostreococcus_tauri_virus	39.1	1.6e-85
AXC71482.1|1525173_1525926_-	HAD-IIA family hydrolase	NA	NA	NA	NA	NA
AXC71483.1|1525972_1527193_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
AXC71484.1|1527210_1528353_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
AXC71485.1|1528412_1529213_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
AXC71486.1|1529539_1531498_+	PTS N-acetyl glucosamine transporter subunit IIABC	NA	A0A2I7SAJ6	Vibrio_phage	48.6	2.2e-09
AXC71487.1|1531708_1533376_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	95.5	0.0e+00
AXC71488.1|1533828_1535235_+	chitoporin	NA	NA	NA	NA	NA
AXC71489.1|1535284_1535617_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71490.1|1535666_1536971_-	tricarballylate/proton symporter TcuC	NA	Q6JIH2	Burkholderia_virus	35.1	5.3e-60
AXC71491.1|1537021_1538161_-	tricarballylate utilization protein TcuB	NA	NA	NA	NA	NA
AXC71492.1|1538147_1539551_-	FAD-dependent tricarballylate dehydrogenase TcuA	NA	A0A2P0ZL82	Lactobacillus_phage	26.5	1.2e-09
AXC71493.1|1539648_1540575_-	tricarballylate utilization LysR family transcriptional regulator TcuR	NA	NA	NA	NA	NA
AXC71494.1|1540691_1541144_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
AXC71495.1|1541425_1541956_-	flavodoxin-1	NA	NA	NA	NA	NA
AXC71496.1|1542106_1542400_-	LexA regulated protein	NA	NA	NA	NA	NA
AXC71497.1|1542533_1543304_-	esterase	NA	NA	NA	NA	NA
AXC71498.1|1543488_1544031_+	replication initiation negative regulator SeqA	NA	NA	NA	NA	NA
AXC71499.1|1544055_1545696_+	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA	NA
1544586:1544602	attL	CAATGCGCTGCTGGCGG	NA	NA	NA	NA
AXC71500.1|1545844_1546819_-|integrase	integrase	integrase	Q83VS6	Escherichia_phage	49.5	1.0e-84
AXC71501.1|1546824_1547181_-	transcriptional regulator	NA	A0A2H4JFL3	uncultured_Caudovirales_phage	46.2	1.3e-16
AXC71502.1|1547462_1547783_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71503.1|1547817_1548420_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71504.1|1548961_1549159_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71505.1|1549409_1549982_+	hypothetical protein	NA	A0A2I7QJ81	Vibrio_phage	35.6	2.7e-24
AXC71506.1|1550189_1552511_+	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	31.6	5.4e-55
AXC71507.1|1552507_1552903_+	DNA-binding protein	NA	A0A0U2QQN3	Escherichia_phage	35.7	1.0e-14
AXC71508.1|1552899_1553142_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71509.1|1553138_1553999_+	DNA adenine methylase	NA	Q5QF26	Pseudomonas_virus	49.3	1.3e-70
AXC71510.1|1554812_1555070_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	83.5	7.5e-35
AXC74897.1|1555427_1556396_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	83.9	7.0e-49
AXC71511.1|1556510_1556768_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71512.1|1556764_1558843_+	DNA cytosine methyltransferase	NA	H9C171	Pectobacterium_phage	52.9	1.8e-198
AXC71513.1|1558839_1560786_+	replication endonuclease	NA	F1BUS0	Erwinia_phage	34.9	7.8e-100
AXC71514.1|1560904_1561186_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71515.1|1561199_1562315_+	hypothetical protein	NA	A0A1W6JP62	Morganella_phage	32.7	3.1e-53
AXC71516.1|1562215_1562965_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71517.1|1563237_1563414_+	mRNA interferase	NA	A0A0R6PGU2	Moraxella_phage	50.9	7.7e-07
AXC71518.1|1563463_1563871_+	type II toxin-antitoxin system HicB family antitoxin	NA	F1C593	Cronobacter_phage	74.1	1.7e-49
AXC71519.1|1563918_1564428_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71520.1|1564408_1565080_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71521.1|1565114_1565507_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71522.1|1565544_1565769_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71523.1|1565778_1566111_-	hypothetical protein	NA	NA	NA	NA	NA
AXC74898.1|1566611_1566911_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXC71524.1|1566888_1567428_+	lysozyme	NA	S5MQK2	Escherichia_phage	74.6	8.0e-79
AXC74899.1|1567436_1567904_+|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	78.9	1.8e-58
AXC71525.1|1567904_1568126_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71526.1|1568568_1569114_+|terminase	terminase small subunit	terminase	K7PJS9	Enterobacteria_phage	59.5	8.4e-52
AXC71527.1|1569085_1571020_+|terminase	phage terminase large subunit family protein	terminase	E4WL19	Enterobacteria_phage	65.9	7.0e-258
AXC71528.1|1571003_1571207_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	76.9	6.6e-18
AXC71529.1|1571203_1572799_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.0	1.1e-184
AXC71530.1|1572788_1574333_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	54.7	1.6e-103
AXC71531.1|1574332_1574680_+|head	head decoration protein	head	E4WL24	Enterobacteria_phage	43.4	2.3e-18
AXC71532.1|1574734_1575763_+|capsid	major capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	58.1	6.4e-109
AXC71533.1|1575826_1576207_+	DNA breaking-rejoining protein	NA	NA	NA	NA	NA
AXC71534.1|1576217_1576574_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.9	2.5e-28
AXC71535.1|1576583_1577183_+|tail	phage tail protein	tail	A0A291AWZ0	Escherichia_phage	69.2	6.4e-69
AXC71536.1|1577182_1577584_+|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	60.6	3.3e-45
AXC71537.1|1577596_1578337_+|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	68.4	1.1e-91
AXC71538.1|1578399_1578795_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	57.3	1.5e-29
AXC71539.1|1578815_1579124_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	55.3	4.2e-24
AXC71540.1|1579107_1582245_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	45.4	3.2e-220
AXC71541.1|1582241_1582574_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	8.2e-34
AXC71542.1|1582623_1583319_+|tail	phage minor tail protein L	tail	Q687F1	Enterobacteria_phage	70.1	3.4e-90
AXC71543.1|1583329_1584067_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	75.4	3.6e-114
AXC71544.1|1583964_1584744_+|tail	tail assembly protein	tail	Q6H9T3	Enterobacteria_phage	61.7	1.4e-71
AXC71545.1|1588201_1588444_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71546.1|1588498_1590934_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	66.9	1.1e-85
AXC71547.1|1590930_1591809_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	84.2	7.3e-138
AXC71548.1|1591805_1592375_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	85.6	8.1e-90
1598860:1598876	attR	CCGCCAGCAGCGCATTG	NA	NA	NA	NA
>prophage 2
CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	5361355	1804764	1814204	5361355	integrase,protease	Dickeya_phage(14.29%)	10	1799457:1799469	1814209:1814221
1799457:1799469	attL	GAAACGGTATTTA	NA	NA	NA	NA
AXC71728.1|1804764_1805883_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
AXC71729.1|1805879_1807826_+	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	41.3	1.0e-38
AXC71730.1|1807964_1808186_-	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXC71731.1|1808509_1808830_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
AXC71732.1|1808860_1811137_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.1	1.4e-164
AXC74912.1|1811275_1811467_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71733.1|1811526_1811715_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71734.1|1811681_1812923_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.7	6.6e-76
AXC71735.1|1812938_1813799_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71736.1|1813994_1814204_+	DNA-binding protein	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	48.0	2.4e-07
1814209:1814221	attR	TAAATACCGTTTC	NA	NA	NA	NA
>prophage 3
CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	5361355	2013912	2106249	5361355	tRNA,head,capsid,portal,tail,integrase,terminase,holin	Escherichia_phage(28.3%)	87	2005852:2005867	2088654:2088669
2005852:2005867	attL	GCAGGTTTCTGGTTTT	NA	NA	NA	NA
AXC71899.1|2013912_2015205_-|integrase	integrase	integrase	Q20GI2	Phage_258-320	72.9	1.7e-188
AXC71900.1|2015252_2015507_-	excisionase	NA	Q859D3	Escherichia_coli_phage	73.1	1.5e-27
AXC71901.1|2015657_2015873_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71902.1|2015872_2016334_-	ATPase	NA	A0A1B5FPC7	Escherichia_phage	52.6	1.6e-43
AXC71903.1|2016330_2016543_-	hypothetical protein	NA	A0A286S2B6	Klebsiella_phage	74.3	5.4e-23
AXC71904.1|2016539_2016764_-	hypothetical protein	NA	A0A1B5FPG2	Escherichia_phage	65.3	3.3e-18
AXC74926.1|2016760_2017006_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71905.1|2017323_2018070_-	ORF6N domain-containing protein	NA	A0A1B5FPC0	Escherichia_phage	79.1	2.8e-106
AXC71906.1|2018081_2018489_-	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	83.6	2.0e-61
AXC71907.1|2018478_2018715_-	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	72.6	1.0e-25
AXC71908.1|2018714_2019092_-	hypothetical protein	NA	A0A1B5FPB3	Escherichia_phage	54.8	5.0e-27
AXC71909.1|2019054_2019264_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71910.1|2019451_2019637_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71911.1|2019633_2019828_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71912.1|2019820_2020138_-	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	51.0	3.0e-17
AXC74927.1|2020316_2021012_-	helix-turn-helix transcriptional regulator	NA	F1C5C2	Cronobacter_phage	67.5	7.4e-85
AXC71913.1|2021124_2021379_+	XRE family transcriptional regulator	NA	A0A2H4JEY0	uncultured_Caudovirales_phage	52.9	5.7e-11
AXC71914.1|2021341_2021638_+	hypothetical protein	NA	A0A1B5FPB9	Escherichia_phage	74.2	1.7e-30
AXC71915.1|2021877_2022246_+	hypothetical protein	NA	A0A1B5FPB1	Escherichia_phage	95.9	1.1e-60
AXC71916.1|2022358_2023987_+	ATP-dependent helicase	NA	A0A1B5FPA4	Escherichia_phage	85.6	3.5e-279
AXC71917.1|2023983_2024949_+	DNA primase	NA	A0A1B5FPA8	Escherichia_phage	96.2	2.5e-179
AXC71918.1|2024948_2025809_+	helix-turn-helix domain-containing protein	NA	A0A1B5FPA6	Escherichia_phage	84.2	8.7e-136
AXC71919.1|2025805_2026588_+	antitermination protein	NA	F1C595	Cronobacter_phage	68.6	2.5e-97
AXC71920.1|2026879_2027692_-	DUF3800 domain-containing protein	NA	Q19UP3	Mannheimia_phage	47.8	2.9e-64
AXC71921.1|2028856_2029666_+	colicin	NA	NA	NA	NA	NA
AXC71922.1|2029702_2030053_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71923.1|2030290_2030680_+	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	72.5	6.2e-41
AXC71924.1|2030666_2030948_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	79.6	9.7e-36
AXC71925.1|2030947_2031565_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	80.9	5.0e-93
AXC71926.1|2031561_2032107_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	54.1	2.0e-13
AXC71927.1|2032284_2032572_+	TonB family protein	NA	H6WZK5	Escherichia_phage	50.0	7.6e-20
AXC71928.1|2032658_2032961_+	hypothetical protein	NA	Q8HA83	Salmonella_phage	94.0	2.2e-49
AXC71929.1|2033027_2033225_+	hypothetical protein	NA	K7PHC3	Enterobacterial_phage	93.8	2.6e-27
AXC71930.1|2033295_2033745_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71931.1|2034153_2034699_+|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
AXC71932.1|2034670_2036605_+|terminase	phage terminase large subunit family protein	terminase	E4WL19	Enterobacteria_phage	65.9	8.2e-259
AXC71933.1|2036588_2036792_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	80.0	1.0e-18
AXC71934.1|2036788_2038375_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	60.7	9.3e-184
AXC71935.1|2038364_2039879_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	53.5	6.5e-102
AXC71936.1|2039878_2040226_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	1.0e-18
AXC71937.1|2040280_2041309_+|capsid	major capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	59.2	5.8e-110
AXC71938.1|2041374_2041770_+	DNA breaking-rejoining protein	NA	NA	NA	NA	NA
AXC71939.1|2041780_2042137_+|tail	phage tail protein	tail	K7P6U9	Enterobacteria_phage	66.1	4.5e-38
AXC71940.1|2042146_2042752_+|tail	phage tail protein	tail	A0A291AWZ0	Escherichia_phage	68.7	2.5e-68
AXC71941.1|2042744_2043143_+|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	60.6	1.7e-41
AXC71942.1|2043155_2043908_+|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	68.0	2.2e-90
AXC71943.1|2043956_2044346_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	57.4	1.7e-30
AXC71944.1|2044366_2044669_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	57.6	4.9e-25
AXC71945.1|2044652_2047811_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	46.9	4.8e-232
AXC71946.1|2047807_2048140_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	62.0	8.2e-34
AXC71947.1|2048292_2049414_+	porin	NA	Q1MVN1	Enterobacteria_phage	62.0	1.2e-124
AXC71948.1|2049578_2050274_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	68.0	6.9e-91
AXC71949.1|2050284_2051028_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	71.4	1.5e-112
AXC71950.1|2050925_2051678_+|tail	tail assembly protein	tail	Q9EYE5	Enterobacteria_phage	61.3	7.8e-72
AXC71951.1|2055172_2055415_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71952.1|2055469_2057905_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	64.6	1.4e-82
AXC71953.1|2058714_2059284_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.4	7.1e-94
AXC74928.1|2059323_2060469_-	UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase	NA	NA	NA	NA	NA
AXC71954.1|2061514_2061712_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71955.1|2061782_2062025_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71956.1|2062111_2062426_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71957.1|2062514_2063156_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AXC71958.1|2063905_2064073_+	stress-induced protein	NA	Q9KX95	Enterobacteria_phage	92.6	1.4e-05
AXC71959.1|2064208_2064847_+	HTH-type transcriptional regulator RutR	NA	NA	NA	NA	NA
AXC71960.1|2064843_2065239_-	lysozyme inhibitor LprI family protein	NA	NA	NA	NA	NA
AXC71961.1|2065297_2069260_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AXC71962.1|2069301_2069643_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71963.1|2069681_2071190_+	sodium:proline symporter	NA	NA	NA	NA	NA
AXC71964.1|2071241_2072999_-	acetyltransferase	NA	NA	NA	NA	NA
AXC71965.1|2073126_2075403_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71966.1|2076988_2077870_-	MurR/RpiR family transcriptional regulator	NA	A0A2P0VNK5	Tetraselmis_virus	28.9	4.3e-05
AXC71967.1|2078155_2079652_-	acetylneuraminate ABC transporter	NA	A0A240F3J2	Aeromonas_phage	22.9	1.3e-17
AXC71968.1|2079816_2080497_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
AXC71969.1|2081003_2082164_+	YjhT family mutarotase	NA	NA	NA	NA	NA
AXC71970.1|2082209_2082902_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71971.1|2083183_2084464_+	MFS transporter	NA	NA	NA	NA	NA
AXC71972.1|2084474_2085581_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AXC71973.1|2085603_2085891_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71974.1|2086169_2086439_-	hypothetical protein	NA	NA	NA	NA	NA
AXC71975.1|2087141_2088335_+	MFS transporter	NA	NA	NA	NA	NA
AXC71976.1|2088540_2088789_+	MbtH family protein	NA	NA	NA	NA	NA
2088654:2088669	attR	GCAGGTTTCTGGTTTT	NA	NA	NA	NA
AXC71977.1|2088785_2093063_+	hypothetical protein	NA	A0A2K9KZV5	Tupanvirus	25.1	9.0e-48
AXC71978.1|2093092_2093872_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AXC71979.1|2093876_2102849_+	hypothetical protein	NA	A0A2K9KZV5	Tupanvirus	27.2	3.5e-179
AXC71980.1|2102863_2104102_+	argininosuccinate synthase	NA	NA	NA	NA	NA
AXC71981.1|2104121_2104859_+	hypothetical protein	NA	NA	NA	NA	NA
AXC71982.1|2104980_2106249_+|tRNA	serine--tRNA ligase	tRNA	A0A2I2L4X3	Orpheovirus	34.6	1.2e-61
>prophage 4
CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	5361355	2602519	2641743	5361355	plate,transposase,bacteriocin,tRNA	Shigella_phage(25.0%)	26	NA	NA
AXC72458.1|2602519_2603596_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AXC72459.1|2603566_2604358_-|transposase	IS4 family transposase	transposase	S5FM71	Shigella_phage	62.2	1.3e-77
AXC72460.1|2604755_2607656_-	RHS repeat protein	NA	NA	NA	NA	NA
AXC72461.1|2607880_2608099_+	hypothetical protein	NA	NA	NA	NA	NA
AXC72462.1|2608563_2609061_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
AXC72463.1|2609097_2610648_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
AXC72464.1|2610661_2612011_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
AXC72465.1|2612007_2612697_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
AXC72466.1|2612696_2614391_+	OmpA family protein	NA	NA	NA	NA	NA
AXC72467.1|2614393_2614885_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
AXC74946.1|2615070_2617728_+	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	32.5	1.1e-93
AXC72468.1|2617724_2620082_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
AXC72469.1|2622313_2622919_+	hypothetical protein	NA	NA	NA	NA	NA
AXC72470.1|2623150_2623453_+	hypothetical protein	NA	NA	NA	NA	NA
AXC72471.1|2623715_2623979_+	PAAR domain-containing protein	NA	R9U4D0	Rhizobium_phage	50.0	1.2e-06
AXC72472.1|2623981_2625190_+	hypothetical protein	NA	NA	NA	NA	NA
AXC72473.1|2625182_2628554_+	type VI secretion protein VasK	NA	NA	NA	NA	NA
AXC72474.1|2628661_2630269_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
AXC72475.1|2630303_2632073_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
AXC72476.1|2633900_2634518_+	hypothetical protein	NA	NA	NA	NA	NA
AXC72477.1|2634753_2635836_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
AXC72478.1|2635934_2636459_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
AXC74947.1|2639055_2639892_+	HNH endonuclease	NA	NA	NA	NA	NA
AXC72479.1|2639954_2641053_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.2	1.5e-47
AXC72480.1|2641243_2641441_+	HNH endonuclease	NA	NA	NA	NA	NA
AXC72481.1|2641449_2641743_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 5
CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	5361355	2903892	2916244	5361355	transposase	Salmonella_phage(66.67%)	14	NA	NA
AXC72716.1|2903892_2905800_+	acyltransferase	NA	C6ZR20	Salmonella_phage	40.3	1.6e-84
AXC72717.1|2905997_2906351_-	hypothetical protein	NA	NA	NA	NA	NA
AXC72718.1|2906358_2907510_-	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	68.2	3.4e-127
AXC72719.1|2907484_2908171_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	99.0	6.1e-116
AXC72720.1|2908167_2909367_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	98.2	1.6e-215
AXC72721.1|2909367_2909721_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	94.0	4.3e-57
AXC72722.1|2909720_2910476_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	83.1	9.4e-102
AXC72723.1|2910548_2910956_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A222YZ88	Escherichia_phage	39.8	1.8e-14
AXC72724.1|2910955_2911369_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
AXC72725.1|2911590_2911785_-	hypothetical protein	NA	NA	NA	NA	NA
AXC72726.1|2911921_2913135_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	85.8	5.5e-144
AXC72727.1|2913536_2914997_+	cardiolipin synthase	NA	NA	NA	NA	NA
AXC72728.1|2915030_2915360_+	DUF440 family protein	NA	NA	NA	NA	NA
AXC72729.1|2915407_2916244_-	transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	42.4	1.0e-08
>prophage 6
CP029989	Salmonella enterica subsp. enterica strain SA20121591 chromosome, complete genome	5361355	3224063	3273052	5361355	lysis,head,capsid,portal,tail,integrase,terminase	Enterobacteria_phage(39.22%)	64	3262527:3262542	3281979:3281994
AXC74976.1|3224063_3224417_-|tail	phage tail protein	tail	A0A0A8J9K3	Ralstonia_phage	39.3	7.4e-17
AXC72995.1|3224758_3225004_-	hypothetical protein	NA	NA	NA	NA	NA
AXC72996.1|3225596_3226187_-	hypothetical protein	NA	Q9LA61	Enterobacterial_phage	51.9	1.8e-44
AXC72997.1|3226199_3226628_-	hypothetical protein	NA	NA	NA	NA	NA
AXC72998.1|3226685_3227288_-	hypothetical protein	NA	Q8W610	Enterobacteria_phage	37.3	4.5e-30
AXC72999.1|3227405_3227558_-	type I toxin-antitoxin system hok family toxin	NA	NA	NA	NA	NA
AXC73000.1|3231237_3232005_-|tail	tail assembly protein	tail	Q9EYE5	Enterobacteria_phage	56.7	1.3e-66
AXC73001.1|3231902_3232670_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	74.3	1.3e-114
AXC73002.1|3232677_3233376_-|tail	phage minor tail protein L	tail	Q687F1	Enterobacteria_phage	69.4	2.2e-92
AXC73003.1|3233425_3233758_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	8.2e-34
AXC73004.1|3233754_3236892_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	45.4	3.2e-220
AXC73005.1|3236875_3237184_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	55.3	4.2e-24
AXC73006.1|3237204_3237600_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	57.3	1.5e-29
AXC73007.1|3237662_3238403_-|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	68.4	1.1e-91
AXC73008.1|3238415_3238817_-|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	60.6	3.3e-45
AXC73009.1|3238816_3239416_-|tail	phage tail protein	tail	A0A291AWZ0	Escherichia_phage	69.2	6.4e-69
AXC73010.1|3239425_3239782_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.9	2.5e-28
AXC73011.1|3239792_3240173_-	DNA breaking-rejoining protein	NA	NA	NA	NA	NA
AXC73012.1|3240236_3241265_-|capsid	major capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	58.1	6.4e-109
AXC73013.1|3241319_3241667_-|head	head decoration protein	head	E4WL24	Enterobacteria_phage	43.4	2.3e-18
AXC73014.1|3241666_3243211_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	54.4	8.7e-102
AXC73015.1|3243200_3244808_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	60.6	2.3e-182
AXC73016.1|3244804_3245008_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	78.5	5.0e-18
AXC73017.1|3244991_3246926_-|terminase	phage terminase large subunit family protein	terminase	E4WL19	Enterobacteria_phage	65.8	1.0e-256
AXC74977.1|3246897_3247443_-|terminase	terminase small subunit	terminase	K7PJS9	Enterobacteria_phage	58.9	1.1e-51
AXC73018.1|3247970_3248438_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	84.1	5.0e-61
AXC73019.1|3248538_3249078_-	lysozyme	NA	S5MQK2	Escherichia_phage	77.6	2.5e-80
AXC73020.1|3249055_3249400_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AXC73021.1|3249524_3249785_+	hypothetical protein	NA	NA	NA	NA	NA
AXC73022.1|3249756_3250812_-	hypothetical protein	NA	Q08JA0	Stx2-converting_phage	40.7	4.5e-17
AXC73023.1|3250881_3251421_-	Rha family transcriptional regulator	NA	A0A0P0ZFJ1	Escherichia_phage	77.3	4.9e-76
AXC73024.1|3251658_3251898_-	hypothetical protein	NA	NA	NA	NA	NA
AXC73025.1|3253025_3253784_-	antitermination protein	NA	Q8SBE4	Shigella_phage	69.0	2.6e-91
AXC73026.1|3253796_3254855_-	hypothetical protein	NA	A0A291AWV9	Escherichia_phage	61.9	4.0e-122
AXC73027.1|3254862_3255663_-	KilA-N domain-containing protein	NA	S5FM84	Shigella_phage	67.7	3.2e-100
AXC73028.1|3255674_3256067_-	hypothetical protein	NA	A0A1C9IIA0	Salmonella_phage	89.1	4.2e-61
AXC74978.1|3256063_3256381_-	LexA family transcriptional regulator	NA	A5LH73	Enterobacteria_phage	58.1	6.7e-25
AXC73029.1|3256396_3258790_-	DNA (cytosine-5-)-methyltransferase	NA	A0A1B0V7P0	Salmonella_phage	51.2	7.6e-230
AXC73030.1|3258786_3259260_-	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	84.8	3.5e-46
AXC73031.1|3259256_3259988_-	DNA replication protein	NA	A0A1P8DTF3	Proteus_phage	42.2	5.8e-40
AXC73032.1|3259984_3260959_-	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	85.1	7.6e-136
AXC73033.1|3260955_3261174_-	hypothetical protein	NA	A0A291AX25	Escherichia_phage	45.7	7.6e-12
AXC73034.1|3261302_3261584_+	hypothetical protein	NA	NA	NA	NA	NA
AXC73035.1|3261588_3261936_+	glycosyl transferase family 1	NA	NA	NA	NA	NA
AXC73036.1|3261936_3262143_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	67.9	5.3e-15
AXC74979.1|3262288_3262864_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	63.9	2.1e-61
3262527:3262542	attL	TCCAGCAGCCGCTGGT	NA	NA	NA	NA
AXC73037.1|3262914_3263178_-	transcriptional regulator	NA	D0UIL8	Aggregatibacter_phage	53.3	3.6e-16
AXC73038.1|3263275_3263743_+	hypothetical protein	NA	A0A2D1GNH0	Pseudomonas_phage	53.4	3.3e-12
AXC73039.1|3263806_3264226_-	transcriptional regulator	NA	NA	NA	NA	NA
AXC73040.1|3264222_3264534_-	cytoplasmic protein	NA	NA	NA	NA	NA
AXC73041.1|3264875_3265118_+	hypothetical protein	NA	R9TEU3	Vibrio_phage	35.5	6.9e-06
AXC73042.1|3266202_3267144_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	56.9	5.9e-93
AXC73043.1|3267483_3267927_+	hypothetical protein	NA	K7PHA5	Enterobacterial_phage	60.5	1.4e-09
AXC73044.1|3268534_3268768_+	hypothetical protein	NA	S4TVX5	Salmonella_phage	46.2	7.3e-13
AXC74980.1|3269211_3269418_+	hypothetical protein	NA	Q5G8U8	Enterobacteria_phage	80.7	2.7e-19
AXC73045.1|3269417_3269678_+	hypothetical protein	NA	Q5G8U9	Enterobacteria_phage	91.2	3.8e-34
AXC73046.1|3269664_3269853_+	diguanylate phosphodiesterase	NA	A0A192Y8X2	Salmonella_phage	96.7	6.7e-25
AXC73047.1|3269856_3270108_+	hypothetical protein	NA	NA	NA	NA	NA
AXC73048.1|3270110_3270314_+	hypothetical protein	NA	NA	NA	NA	NA
AXC73049.1|3270317_3270692_+	hypothetical protein	NA	R9TQX3	Aeromonas_phage	63.4	5.7e-07
AXC73050.1|3270688_3271228_+	hypothetical protein	NA	Q5G8V2	Enterobacteria_phage	73.9	4.5e-13
AXC73051.1|3271224_3271794_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	88.4	2.8e-98
AXC73052.1|3271818_3272061_+	hypothetical protein	NA	Q8HAA9	Salmonella_phage	93.8	5.8e-37
AXC73053.1|3272062_3273052_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	99.1	2.1e-194
3281979:3281994	attR	ACCAGCGGCTGCTGGA	NA	NA	NA	NA
