assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003323835.1_ASM332383v1	CP030874	Raoultella sp. X13 chromosome, complete genome	1	1114789-1114877	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	CGACAAAACCGTGGGCCGGTGCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA	NA|117aa|up_9|CP030874.1_1106159_1106510_-	PRK03681, hypA, hydrogenase/urease nickel incorporation protein HypA	NA|150aa|up_8|CP030874.1_1106721_1107171_+	PRK10198, PRK10198, formate hydrogenlyase regulator HycA	NA|203aa|up_7|CP030874.1_1107253_1107862_+	cd10554, HycB_like, HycB, HydN and similar proteins	NA|609aa|up_6|CP030874.1_1107858_1109685_+	PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed	NA|308aa|up_5|CP030874.1_1109687_1110611_+	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]	NA|570aa|up_4|CP030874.1_1110627_1112337_+	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|181aa|up_3|CP030874.1_1112346_1112889_+	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional	NA|256aa|up_2|CP030874.1_1112888_1113656_+	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|137aa|up_1|CP030874.1_1113652_1114063_+	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|157aa|up_0|CP030874.1_1114055_1114526_+	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|475aa|down_0|CP030874.1_1114905_1116330_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|481aa|down_1|CP030874.1_1116358_1117801_-	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional	NA|338aa|down_2|CP030874.1_1118067_1119081_+	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|176aa|down_3|CP030874.1_1119228_1119756_+	PRK10330, PRK10330, electron transport protein HydN	NA|745aa|down_4|CP030874.1_1119768_1122003_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|349aa|down_5|CP030874.1_1121999_1123046_+	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|378aa|down_6|CP030874.1_1123549_1124683_-	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|483aa|down_7|CP030874.1_1124679_1126128_-	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|515aa|down_8|CP030874.1_1126315_1127860_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|322aa|down_9|CP030874.1_1127822_1128788_-	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ
GCA_003323835.1_ASM332383v1	CP030874	Raoultella sp. X13 chromosome, complete genome	2	4394373-4394466	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	GCGACGTTAAAAATCGCTCCCGGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA	NA|810aa|up_9|CP030874.1_4382764_4385194_-	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional	NA|451aa|up_8|CP030874.1_4385225_4386578_-	PRK10779, PRK10779, sigma E protease regulator RseP	NA|286aa|up_7|CP030874.1_4386589_4387447_-	PRK11624, cdsA, phosphatidate cytidylyltransferase	NA|253aa|up_6|CP030874.1_4387459_4388218_-	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA|401aa|up_5|CP030874.1_4388467_4389670_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|186aa|up_4|CP030874.1_4389909_4390467_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|242aa|up_3|CP030874.1_4390617_4391343_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|284aa|up_2|CP030874.1_4391490_4392342_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|242aa|up_1|CP030874.1_4392459_4393185_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|265aa|up_0|CP030874.1_4393508_4394303_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|888aa|down_0|CP030874.1_4394506_4397170_+	PRK05007, PRK05007, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|275aa|down_1|CP030874.1_4397205_4398030_+	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|130aa|down_2|CP030874.1_4398137_4398527_+	PRK13677, PRK13677, DUF3461 family protein	NA|386aa|down_3|CP030874.1_4398617_4399775_-	PRK11477, PRK11477, CdaR family transcriptional regulator	NA|480aa|down_4|CP030874.1_4399965_4401405_-	PRK10942, PRK10942, serine endoprotease DegP	NA|505aa|down_5|CP030874.1_4401539_4403054_-	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional	NA|233aa|down_6|CP030874.1_4403138_4403837_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|267aa|down_7|CP030874.1_4403829_4404630_+	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional	NA|208aa|down_8|CP030874.1_4404772_4405396_+	PRK10578, PRK10578, hypothetical protein; Provisional	NA|115aa|down_9|CP030874.1_4405453_4405798_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional
GCA_003323835.1_ASM332383v1	CP030874	Raoultella sp. X13 chromosome, complete genome	3	4614957-4615046	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	TACGCCTTATCCGGCCTACAGATTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA	NA|216aa|up_9|CP030874.1_4603770_4604418_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_8|CP030874.1_4604531_4605047_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|109aa|up_7|CP030874.1_4605033_4605360_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_6|CP030874.1_4605513_4607451_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_5|CP030874.1_4607684_4609352_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|up_4|CP030874.1_4609420_4610653_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|up_3|CP030874.1_4610798_4612181_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|up_2|CP030874.1_4612191_4613163_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|212aa|up_1|CP030874.1_4613266_4613902_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_0|CP030874.1_4613919_4614936_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_0|CP030874.1_4615103_4615823_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_1|CP030874.1_4615926_4617150_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_2|CP030874.1_4617202_4618525_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_3|CP030874.1_4618681_4619461_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|260aa|down_4|CP030874.1_4619929_4620709_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_5|CP030874.1_4620705_4621779_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_6|CP030874.1_4622029_4622191_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|204aa|down_7|CP030874.1_4622445_4623057_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_8|CP030874.1_4623275_4624865_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|down_9|CP030874.1_4624956_4625634_-	PRK09449, PRK09449, dUMP phosphatase; Provisional
GCA_003323835.1_ASM332383v1	CP030874	Raoultella sp. X13 chromosome, complete genome	4	4818700-4818807	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	GCCCGGGCTACGCACCGACACCCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA	NA|291aa|up_9|CP030874.1_4806124_4806997_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|296aa|up_8|CP030874.1_4806986_4807874_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|275aa|up_7|CP030874.1_4807884_4808709_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|358aa|up_6|CP030874.1_4808714_4809788_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|437aa|up_5|CP030874.1_4809780_4811091_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|253aa|up_4|CP030874.1_4811495_4812254_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|540aa|up_3|CP030874.1_4812258_4813878_-	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|460aa|up_2|CP030874.1_4813890_4815270_-	PRK09669, PRK09669, putative symporter YagG; Provisional	NA|656aa|up_1|CP030874.1_4815629_4817597_-	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase	NA|303aa|up_0|CP030874.1_4817611_4818520_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|300aa|down_0|CP030874.1_4819016_4819916_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|295aa|down_1|CP030874.1_4819939_4820824_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|338aa|down_2|CP030874.1_4820866_4821880_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|647aa|down_3|CP030874.1_4821927_4823868_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|638aa|down_4|CP030874.1_4824396_4826310_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|287aa|down_5|CP030874.1_4826460_4827321_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|270aa|down_6|CP030874.1_4827562_4828372_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|502aa|down_7|CP030874.1_4828390_4829896_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|274aa|down_8|CP030874.1_4830248_4831070_+	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism]	NA|501aa|down_9|CP030874.1_4831168_4832671_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)
GCA_003323835.1_ASM332383v1	CP030874	Raoultella sp. X13 chromosome, complete genome	5	4827328-4827476	5	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG	Orphan	CCCCTCTCCCGATGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAA	45	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA	NA|540aa|up_9|CP030874.1_4812258_4813878_-	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|460aa|up_8|CP030874.1_4813890_4815270_-	PRK09669, PRK09669, putative symporter YagG; Provisional	NA|656aa|up_7|CP030874.1_4815629_4817597_-	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase	NA|303aa|up_6|CP030874.1_4817611_4818520_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|300aa|up_5|CP030874.1_4819016_4819916_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|295aa|up_4|CP030874.1_4819939_4820824_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|338aa|up_3|CP030874.1_4820866_4821880_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|647aa|up_2|CP030874.1_4821927_4823868_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|638aa|up_1|CP030874.1_4824396_4826310_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|287aa|up_0|CP030874.1_4826460_4827321_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|270aa|down_0|CP030874.1_4827562_4828372_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|502aa|down_1|CP030874.1_4828390_4829896_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|274aa|down_2|CP030874.1_4830248_4831070_+	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism]	NA|501aa|down_3|CP030874.1_4831168_4832671_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|294aa|down_4|CP030874.1_4832671_4833553_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|408aa|down_5|CP030874.1_4833903_4835127_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|557aa|down_6|CP030874.1_4835140_4836811_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|422aa|down_7|CP030874.1_4836834_4838100_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|278aa|down_8|CP030874.1_4838101_4838935_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|310aa|down_9|CP030874.1_4838921_4839851_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS
GCA_003323835.1_ASM332383v1	CP030875	Raoultella sp. X13 plasmid unnamed, complete sequence	1	113-207	1	CRISPRCasFinder	no			Orphan	GTGGGTGGACAGGCTGGACAAAGTGGACA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA,NA|86aa|down_0|CP030875.1_610_868_+,NA|189aa|down_1|CP030875.1_1500_2067_-,NA|73aa|down_2|CP030875.1_2088_2307_-,NA|92aa|down_3|CP030875.1_2424_2700_-,NA|107aa|down_4|CP030875.1_2690_3011_-,NA|129aa|down_5|CP030875.1_3041_3428_-,NA|101aa|down_6|CP030875.1_3532_3835_-,NA|97aa|down_8|CP030875.1_4983_5274_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|86aa|down_0|CP030875.1_610_868_+	NA	NA|189aa|down_1|CP030875.1_1500_2067_-	NA	NA|73aa|down_2|CP030875.1_2088_2307_-	NA	NA|92aa|down_3|CP030875.1_2424_2700_-	NA	NA|107aa|down_4|CP030875.1_2690_3011_-	NA	NA|129aa|down_5|CP030875.1_3041_3428_-	NA	NA|101aa|down_6|CP030875.1_3532_3835_-	NA	NA|231aa|down_7|CP030875.1_3902_4595_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|97aa|down_8|CP030875.1_4983_5274_-	NA	NA|173aa|down_9|CP030875.1_5411_5930_-	pfam08805, PilS, PilS N terminal
GCA_003323835.1_ASM332383v1	CP030875	Raoultella sp. X13 plasmid unnamed, complete sequence	2	43595-43689	2	CRISPRCasFinder	no			Orphan	TGTCCACTTTGTCCAGTCTGTCCACCCAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG	NA|82aa|up_9|CP030875.1_37564_37810_-,NA|98aa|up_6|CP030875.1_39388_39682_-,NA|70aa|up_5|CP030875.1_40224_40434_-,NA|219aa|up_3|CP030875.1_41304_41961_+,NA|86aa|up_0|CP030875.1_42933_43191_-,NA	NA|82aa|up_9|CP030875.1_37564_37810_-	NA	NA|180aa|up_8|CP030875.1_37826_38366_-	pfam08805, PilS, PilS N terminal	NA|186aa|up_7|CP030875.1_38381_38939_-	pfam08805, PilS, PilS N terminal	NA|98aa|up_6|CP030875.1_39388_39682_-	NA	NA|70aa|up_5|CP030875.1_40224_40434_-	NA	NA|176aa|up_4|CP030875.1_40444_40972_-	PHA03095, PHA03095, ankyrin-like protein; Provisional	NA|219aa|up_3|CP030875.1_41304_41961_+	NA	NA|92aa|up_2|CP030875.1_42129_42405_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|87aa|up_1|CP030875.1_42408_42669_-	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|86aa|up_0|CP030875.1_42933_43191_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
