The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	1116068	1124458	4679033		Enterobacteria_phage(62.5%)	13	NA	NA
AXB18769.1|1116068_1116569_-	hypothetical protein	NA	A0A2H4J2P5	uncultured_Caudovirales_phage	61.3	8.9e-40
AXB18770.1|1117006_1119349_-	DNA primase TraC	NA	Q7M2A8	Enterobacteria_phage	84.5	0.0e+00
AXB18771.1|1119363_1119684_-	hypothetical protein	NA	NA	NA	NA	NA
AXB18772.1|1119680_1119908_-	hypothetical protein	NA	NA	NA	NA	NA
AXB18773.1|1119904_1120099_-	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	87.1	2.5e-22
AXB18774.1|1120449_1120716_-	hypothetical protein	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
AXB18775.1|1121256_1122000_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18776.1|1122003_1122243_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	60.5	3.7e-20
AXB18777.1|1122258_1122825_+	hypothetical protein	NA	Q7M2A1	Enterobacteria_phage	65.4	8.7e-60
AXB18778.1|1122788_1122974_-	hypothetical protein	NA	NA	NA	NA	NA
AXB18779.1|1123097_1123250_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18780.1|1123310_1123589_+	hypothetical protein	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
AXB18781.1|1123645_1124458_+	hypothetical protein	NA	U5P429	Shigella_phage	93.7	8.5e-149
>prophage 2
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	1148508	1185968	4679033	integrase,tail	Salmonella_phage(86.05%)	51	1140997:1141013	1157503:1157519
1140997:1141013	attL	AACCCATTTTTATCTAT	NA	NA	NA	NA
AXB18808.1|1148508_1149390_-	hypothetical protein	NA	A0A097BYB4	Enterococcus_phage	41.0	4.3e-29
AXB18809.1|1149470_1151054_-	hypothetical protein	NA	NA	NA	NA	NA
AXB18810.1|1151257_1151383_-	hypothetical protein	NA	NA	NA	NA	NA
AXB18811.1|1151539_1152766_-|integrase	Prophage integrase IntA	integrase	A0A1B5FPC6	Escherichia_phage	81.0	2.0e-189
AXB18812.1|1152952_1153207_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18813.1|1153096_1154122_-	Tyrosine recombinase XerH	NA	A0A1S6L016	Salmonella_phage	95.3	1.4e-193
AXB18814.1|1154123_1154756_-	hypothetical protein	NA	A0A1S6KZZ7	Salmonella_phage	90.5	6.9e-106
AXB18815.1|1154875_1155124_+	hypothetical protein	NA	A0A1S6KZZ6	Salmonella_phage	71.6	3.4e-24
AXB18816.1|1155156_1155666_+	hypothetical protein	NA	A0A1S6L008	Salmonella_phage	95.9	1.7e-86
AXB18817.1|1155673_1155874_+	hypothetical protein	NA	A0A1S6L005	Salmonella_phage	92.3	1.3e-29
AXB18818.1|1155837_1156188_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	64.3	3.3e-33
AXB18819.1|1156242_1156671_+	hypothetical protein	NA	Q71TK7	Escherichia_phage	86.7	1.1e-57
AXB18820.1|1156670_1156820_+	hypothetical protein	NA	A0A0A0YRI9	Escherichia_phage	61.7	2.2e-07
AXB18821.1|1156922_1157156_+	hypothetical protein	NA	A0A1S6L021	Salmonella_phage	94.8	2.7e-31
AXB18822.1|1157155_1157383_+	putative protein YbiI	NA	A0A1S6L007	Salmonella_phage	88.0	8.1e-33
AXB18823.1|1157379_1157964_+	Exodeoxyribonuclease 10	NA	A0A1S6L012	Salmonella_phage	76.7	2.4e-84
1157503:1157519	attR	ATAGATAAAAATGGGTT	NA	NA	NA	NA
AXB18824.1|1157960_1158257_+	hypothetical protein	NA	C9E2N9	Enterococcus_phage	46.8	8.7e-11
AXB18825.1|1158253_1159111_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	82.8	2.4e-133
AXB18826.1|1159101_1161510_+	hypothetical protein	NA	A0A1S6L028	Salmonella_phage	95.4	0.0e+00
AXB18827.1|1161491_1161857_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	98.4	9.1e-26
AXB18828.1|1161868_1162102_+	DNA damage-inducible protein I	NA	A0A1S6L014	Salmonella_phage	92.2	3.7e-33
AXB18829.1|1162238_1163132_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18830.1|1163134_1163398_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18831.1|1163390_1163807_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18832.1|1164120_1165176_-	hypothetical protein	NA	A0A1S6KZW5	Salmonella_phage	88.5	1.8e-175
AXB18833.1|1165172_1165898_-	hypothetical protein	NA	Q9ZXM5	Pseudomonas_virus	39.6	3.9e-20
AXB18834.1|1165897_1167616_-	hypothetical protein	NA	E5G6M4	Salmonella_phage	98.3	0.0e+00
AXB18835.1|1167806_1168640_+	hypothetical protein	NA	E5G6M5	Salmonella_phage	99.6	6.9e-130
AXB18836.1|1168656_1169721_+	hypothetical protein	NA	A0A1S6KZZ3	Salmonella_phage	99.7	1.9e-196
AXB18837.1|1169724_1170375_+	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	100.0	2.2e-115
AXB18838.1|1170468_1170933_+	hypothetical protein	NA	A0A1S6KZW8	Salmonella_phage	98.1	4.2e-84
AXB18839.1|1170932_1171136_+	hypothetical protein	NA	E5G6M9	Salmonella_phage	100.0	3.8e-34
AXB18840.1|1171139_1171355_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
AXB18841.1|1171335_1171845_+	Lysozyme RrrD	NA	A0A1S6KZY9	Salmonella_phage	98.8	6.4e-94
AXB18842.1|1171849_1172224_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18843.1|1172220_1172649_+	hypothetical protein	NA	A0A1S6KZX8	Salmonella_phage	94.3	7.5e-64
AXB18844.1|1172744_1173176_+	hypothetical protein	NA	E5G6N3	Salmonella_phage	100.0	1.7e-76
AXB18845.1|1173168_1173615_+	hypothetical protein	NA	E5G6N4	Salmonella_phage	98.6	8.7e-71
AXB18846.1|1173616_1174468_-	hypothetical protein	NA	E5G6N5	Salmonella_phage	99.6	1.1e-162
AXB18847.1|1174545_1175124_+	hypothetical protein	NA	E5G6N6	Salmonella_phage	100.0	1.4e-108
AXB18848.1|1175120_1175486_+	hypothetical protein	NA	A0A1S6KZZ4	Salmonella_phage	95.0	2.9e-56
AXB18849.1|1175472_1176381_+	hypothetical protein	NA	E5G6N8	Salmonella_phage	99.7	5.9e-159
AXB18850.1|1176373_1176979_+	hypothetical protein	NA	E5G6N9	Salmonella_phage	98.5	5.4e-116
AXB18851.1|1176975_1178742_+	hypothetical protein	NA	A0A1S6KZZ8	Salmonella_phage	52.0	1.2e-136
AXB18852.1|1178744_1179272_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18853.1|1179400_1180573_+|tail	Putative prophage major tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	96.4	6.8e-216
AXB18854.1|1180582_1181098_+	hypothetical protein	NA	E5G6P8	Salmonella_phage	98.8	2.3e-91
AXB18855.1|1181152_1181455_+	hypothetical protein	NA	A0A1S6KZZ9	Salmonella_phage	99.0	9.4e-45
AXB18856.1|1181581_1184389_+	Chromosome partition protein Smc	NA	E5G6Q1	Salmonella_phage	99.1	0.0e+00
AXB18857.1|1184385_1184871_+	hypothetical protein	NA	E5G6Q2	Salmonella_phage	99.2	8.3e-67
AXB18858.1|1184867_1185968_+	hypothetical protein	NA	A0A1S6KZZ5	Salmonella_phage	99.2	2.8e-195
>prophage 3
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	1255971	1262991	4679033	integrase	Salmonella_phage(33.33%)	8	1250327:1250340	1258217:1258230
1250327:1250340	attL	CGATATTCAGCGTT	NA	NA	NA	NA
AXB18912.1|1255971_1257201_+|integrase	Prophage integrase IntA	integrase	H6WRW7	Salmonella_phage	93.4	6.0e-231
AXB18913.1|1257320_1257578_+	hypothetical protein	NA	U5P4I9	Shigella_phage	92.4	5.4e-33
AXB18914.1|1257656_1258244_-	hypothetical protein	NA	Q6H9S3	Enterobacteria_phage	40.3	1.5e-17
1258217:1258230	attR	CGATATTCAGCGTT	NA	NA	NA	NA
AXB18915.1|1258414_1258816_-	hypothetical protein	NA	NA	NA	NA	NA
AXB18916.1|1259557_1259788_+	hypothetical protein	NA	U5P429	Shigella_phage	96.1	1.8e-35
AXB18917.1|1260280_1260457_+	hypothetical protein	NA	NA	NA	NA	NA
AXB18918.1|1260447_1260747_+	DNA-invertase hin	NA	S4TTF2	Salmonella_phage	92.6	1.0e-27
AXB18919.1|1261191_1262991_+	Elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
>prophage 4
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	1479441	1488361	4679033	integrase	Salmonella_phage(33.33%)	10	1479337:1479351	1487270:1487284
1479337:1479351	attL	TGGTGTCCCCTGCAG	NA	NA	NA	NA
AXB19106.1|1479441_1479645_-	Response regulator inhibitor for tor operon	NA	C6ZR24	Salmonella_phage	97.0	2.7e-32
AXB19107.1|1479613_1479739_-	hypothetical protein	NA	NA	NA	NA	NA
AXB19108.1|1479741_1480377_-	hypothetical protein	NA	A0A075B8I7	Enterobacteria_phage	89.1	5.7e-108
AXB19109.1|1480413_1480917_-	hypothetical protein	NA	A0A1R3Y5P7	Salmonella_virus	33.3	6.4e-14
AXB19110.1|1480943_1481222_+	hypothetical protein	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
AXB19111.1|1481476_1482091_+	hypothetical protein	NA	U5P429	Shigella_phage	93.6	1.3e-106
AXB19112.1|1482053_1483070_+	hypothetical protein	NA	T1SBJ2	Salmonella_phage	94.7	6.6e-175
AXB19113.1|1483105_1485028_-	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	97.3	0.0e+00
AXB19114.1|1485936_1487106_-|integrase	Prophage integrase IntS	integrase	C6ZR22	Salmonella_phage	92.8	1.7e-214
AXB19115.1|1487419_1488361_-	Inner membrane protein YfdC	NA	E7DYY8	Enterobacteria_phage	88.2	1.4e-147
1487270:1487284	attR	TGGTGTCCCCTGCAG	NA	NA	NA	NA
>prophage 5
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	1720284	1729453	4679033	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AXB19331.1|1720284_1721232_+	Glycine betaine uptake system ATP-binding protein YehX	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
AXB19332.1|1721215_1721947_+	Glycine betaine uptake system permease protein YehW	NA	NA	NA	NA	NA
AXB19333.1|1721927_1722035_-	hypothetical protein	NA	NA	NA	NA	NA
AXB19334.1|1722094_1722826_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AXB19335.1|1723048_1724734_+	Sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
AXB19336.1|1724730_1725450_+	Transcriptional regulatory protein BtsR	NA	NA	NA	NA	NA
AXB19337.1|1725496_1725964_+	hypothetical protein	NA	Q9EYF4	Enterobacteria_phage	89.7	6.7e-74
AXB19338.1|1726132_1726549_-	putative lipoprotein YehR	NA	NA	NA	NA	NA
AXB19339.1|1726720_1727179_-	putative lipoprotein YehR	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AXB19340.1|1727419_1729453_-|tRNA	Methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.4	2.3e-54
>prophage 6
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	1945735	1962726	4679033		Enterobacteria_phage(26.67%)	18	NA	NA
AXB19557.1|1945735_1946986_+	Isocitrate dehydrogenase [NADP]	NA	Q77Z09	Phage_21	92.6	5.1e-20
AXB19558.1|1947099_1948242_-	hypothetical protein	NA	O21929	Phage_21	80.0	6.9e-173
AXB19559.1|1948231_1948468_-	hypothetical protein	NA	NA	NA	NA	NA
AXB19560.1|1948517_1948949_-	hypothetical protein	NA	Q5G8V2	Enterobacteria_phage	85.0	3.0e-12
AXB19561.1|1949086_1950655_+	hypothetical protein	NA	K7PKJ2	Enterobacteria_phage	76.9	1.4e-155
AXB19562.1|1950693_1950936_+	hypothetical protein	NA	NA	NA	NA	NA
AXB19563.1|1950989_1953560_+	hypothetical protein	NA	Q6K1H2	Salmonella_virus	64.5	4.2e-133
AXB19564.1|1953562_1954096_+	hypothetical protein	NA	A0A1S6KZZ1	Salmonella_phage	83.1	2.5e-80
AXB19565.1|1954617_1954998_-	hypothetical protein	NA	A0A1B0VCD0	Salmonella_phage	66.2	1.7e-19
AXB19566.1|1955092_1957099_+	E3 ubiquitin-protein ligase SspH2	NA	Q9MBL9	Phage_Gifsy-2	78.9	7.4e-61
AXB19567.1|1957409_1958081_-	Putative SOS response-associated peptidase YedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	1.1e-80
AXB19568.1|1958228_1958507_+	hypothetical protein	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
AXB19569.1|1958570_1959374_+	hypothetical protein	NA	U5P429	Shigella_phage	93.4	7.1e-140
AXB19570.1|1959666_1960209_+	hypothetical protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
AXB19571.1|1960356_1960734_-	hypothetical protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
AXB19572.1|1960806_1961430_-	Cytolethal distending toxin subunit B	NA	A5LH53	Enterobacteria_phage	47.6	1.9e-44
AXB19573.1|1961485_1961614_-	Cytolethal distending toxin subunit B	NA	NA	NA	NA	NA
AXB19574.1|1962486_1962726_-	DNA damage-inducible protein I	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 7
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2193487	2199346	4679033		Escherichia_phage(66.67%)	7	NA	NA
AXB19819.1|2193487_2194102_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.8	4.3e-28
AXB19820.1|2194143_2195001_-	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA	NA
AXB19821.1|2195002_2195620_-	Anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	60.1	2.5e-76
AXB19822.1|2195630_2196869_-	Dimethyl sulfoxide reductase DmsA	NA	A0A077SK27	Escherichia_phage	46.4	2.8e-103
AXB19823.1|2196923_2198060_-	Dimethyl sulfoxide reductase DmsA	NA	A0A077SK27	Escherichia_phage	48.9	1.9e-90
AXB19824.1|2198198_2199011_-	hypothetical protein	NA	U5P429	Shigella_phage	93.7	8.5e-149
AXB19825.1|2199067_2199346_-	hypothetical protein	NA	U5P4I9	Shigella_phage	92.5	2.6e-33
>prophage 8
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2408382	2418311	4679033		Escherichia_phage(57.14%)	10	NA	NA
AXB20034.1|2408382_2410821_+	Putative dimethyl sulfoxide reductase chain YnfE	NA	A0A077SK27	Escherichia_phage	49.4	1.4e-218
AXB20035.1|2410919_2413355_+	putative dimethyl sulfoxide reductase chain YnfF	NA	A0A077SK27	Escherichia_phage	48.3	6.0e-206
AXB20036.1|2413365_2413983_+	Anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	59.6	1.6e-75
AXB20037.1|2413984_2414839_+	Anaerobic dimethyl sulfoxide reductase chain C	NA	NA	NA	NA	NA
AXB20038.1|2414881_2415496_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	38.1	1.5e-28
AXB20039.1|2415603_2415834_+	HTH-type transcriptional regulator DsdC	NA	NA	NA	NA	NA
AXB20040.1|2415856_2416114_+	hypothetical protein	NA	U5P4I9	Shigella_phage	92.4	5.4e-33
AXB20041.1|2416032_2416779_-	hypothetical protein	NA	Q6H9S3	Enterobacteria_phage	34.5	1.7e-18
AXB20042.1|2417018_2417342_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20043.1|2417369_2418311_+	hypothetical protein	NA	U5P429	Shigella_phage	93.0	9.2e-147
>prophage 9
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2585023	2591356	4679033		Shigella_phage(50.0%)	9	NA	NA
AXB20207.1|2585023_2585419_+	putative protein YdfO	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
AXB20208.1|2585747_2586224_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20209.1|2586611_2587031_-	Acetyltransferase	NA	NA	NA	NA	NA
AXB20210.1|2587364_2587664_+	hypothetical protein	NA	U5P4I9	Shigella_phage	90.9	4.8e-41
AXB20211.1|2587701_2588514_+	hypothetical protein	NA	U5P429	Shigella_phage	93.7	8.5e-149
AXB20212.1|2588751_2589882_+	Phytochrome-like protein cph2	NA	NA	NA	NA	NA
AXB20213.1|2590167_2590563_-	hypothetical protein	NA	A0A088CBK9	Shigella_phage	38.1	2.9e-17
AXB20214.1|2590881_2591082_+	Protein RecT	NA	A0A1P8DTF2	Proteus_phage	73.2	3.5e-16
AXB20215.1|2591026_2591356_+	hypothetical protein	NA	A0A2H4IYC8	uncultured_Caudovirales_phage	48.2	4.2e-22
>prophage 10
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2596147	2608361	4679033	tail	Edwardsiella_phage(46.67%)	16	NA	NA
AXB20218.1|2596147_2596717_-|tail	Prophage tail fiber assembly protein TfaE	tail	A0A0M4RTP2	Salmonella_phage	89.9	2.9e-95
AXB20219.1|2596706_2597501_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0M4QWS3	Salmonella_phage	87.9	1.2e-134
AXB20220.1|2597497_2598949_-	hypothetical protein	NA	E5G6P0	Salmonella_phage	74.3	2.3e-48
AXB20221.1|2598938_2599541_-	hypothetical protein	NA	A0A2R3UAM9	Myoviridae_environmental_samples	38.9	4.3e-33
AXB20222.1|2599542_2600784_-	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.4	6.5e-100
AXB20223.1|2600780_2601137_-	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	2.1e-19
AXB20224.1|2601149_2601827_-	hypothetical protein	NA	A0A077KAY0	Edwardsiella_phage	36.4	5.4e-32
AXB20225.1|2601807_2602677_-	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.4	2.0e-31
AXB20226.1|2602673_2602976_-	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
AXB20227.1|2602975_2603686_-	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.3	4.7e-26
AXB20228.1|2603682_2604726_-	Membrane-bound lytic murein transglycosylase D	NA	A0A0M4REK7	Salmonella_phage	67.1	6.8e-50
AXB20229.1|2604747_2605851_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20230.1|2606058_2606463_-	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	1.8e-19
AXB20231.1|2606462_2606909_-	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
AXB20232.1|2606909_2607461_-	hypothetical protein	NA	A0A077KGV4	Edwardsiella_phage	47.2	1.1e-43
AXB20233.1|2607821_2608361_-	Lysozyme RrrD	NA	S5MQK2	Escherichia_phage	74.7	5.2e-78
>prophage 11
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2612655	2618845	4679033		Enterobacteria_phage(25.0%)	12	NA	NA
AXB20236.1|2612655_2613018_-	hypothetical protein	NA	Q777W5	Enterobacteria_phage	80.8	1.3e-53
AXB20237.1|2613017_2613335_-	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	79.3	4.9e-36
AXB20238.1|2613316_2613511_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	59.6	1.0e-12
AXB20239.1|2613507_2613945_-	hypothetical protein	NA	G8C7V3	Escherichia_phage	69.4	8.0e-53
AXB20240.1|2614115_2614283_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20241.1|2614705_2615518_-	hypothetical protein	NA	U5P429	Shigella_phage	93.3	3.6e-147
AXB20242.1|2615574_2615853_-	hypothetical protein	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
AXB20243.1|2616048_2616474_+	hypothetical protein	NA	A0A2H4IYC8	uncultured_Caudovirales_phage	48.9	1.2e-29
AXB20244.1|2616856_2617210_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20245.1|2617226_2618102_-	Inner membrane protein YebZ	NA	NA	NA	NA	NA
AXB20246.1|2618102_2618477_-	Protein YobA	NA	NA	NA	NA	NA
AXB20247.1|2618614_2618845_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 12
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2647669	2661030	4679033		Salmonella_phage(25.0%)	14	NA	NA
AXB20279.1|2647669_2647960_+	Putative SOS response-associated peptidase YedK	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	50.0	1.3e-22
AXB20280.1|2648279_2650382_-	E3 ubiquitin-protein ligase SspH1	NA	Q9MBL9	Phage_Gifsy-2	46.9	6.2e-26
AXB20281.1|2650552_2651593_-	hypothetical protein	NA	A0A077SLK2	Escherichia_phage	86.4	3.1e-180
AXB20282.1|2652918_2653329_-	hypothetical protein	NA	A0A1B0V844	Salmonella_phage	86.6	2.0e-61
AXB20283.1|2653427_2654429_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	97.3	2.1e-56
AXB20284.1|2654415_2654868_-	hypothetical protein	NA	A0A192Y5V3	Salmonella_phage	99.3	3.7e-85
AXB20285.1|2655320_2655725_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20286.1|2655840_2656644_-	hypothetical protein	NA	F1C595	Cronobacter_phage	71.9	5.7e-105
AXB20287.1|2656787_2657066_+	hypothetical protein	NA	U5P4I9	Shigella_phage	93.8	9.0e-34
AXB20288.1|2657320_2657935_+	hypothetical protein	NA	U5P429	Shigella_phage	93.6	1.3e-106
AXB20289.1|2658605_2659046_+	Putative defective protein IntQ	NA	Q8W658	Enterobacteria_phage	81.4	7.7e-64
AXB20290.1|2659282_2659798_+	hypothetical protein	NA	Q859D1	Escherichia_coli_phage	77.6	2.8e-20
AXB20291.1|2659850_2660246_+	Inner membrane protein YecN	NA	NA	NA	NA	NA
AXB20292.1|2660286_2661030_+	Carboxy-S-adenosyl-L-methionine synthase	NA	F5B419	Synechococcus_phage	30.4	5.4e-25
>prophage 13
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2733995	2748951	4679033		Salmonella_phage(46.15%)	18	NA	NA
AXB20373.1|2733995_2735426_-	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
AXB20374.1|2735499_2736195_-	putative protein YedJ	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
AXB20375.1|2736273_2736585_-	Inner membrane protein YedR	NA	NA	NA	NA	NA
AXB20376.1|2737234_2738434_+	Outer membrane protein N	NA	Q1MVN1	Enterobacteria_phage	56.7	1.1e-109
AXB20377.1|2738798_2739011_-	Cold shock-like protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
AXB20378.1|2739466_2740735_-	Protein UmuC	NA	I6RSM4	Salmonella_phage	91.2	1.9e-224
AXB20379.1|2740737_2741157_-	Protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AXB20380.1|2741726_2742476_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20381.1|2743822_2744830_+	hypothetical protein	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
AXB20382.1|2744830_2744980_-	hypothetical protein	NA	S4TRX2	Salmonella_phage	61.0	4.7e-05
AXB20383.1|2745114_2745684_-	hypothetical protein	NA	Q8HAB3	Salmonella_phage	100.0	7.3e-107
AXB20384.1|2745683_2746565_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	100.0	2.8e-166
AXB20385.1|2746611_2746749_-	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	64.4	2.9e-09
AXB20386.1|2746918_2747458_-	Lysozyme RrrD	NA	S5MQK2	Escherichia_phage	74.7	5.2e-78
AXB20387.1|2747435_2747744_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20388.1|2747933_2748176_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20389.1|2748217_2748589_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20390.1|2748585_2748951_-	hypothetical protein	NA	A0A1I9KFD3	Aeromonas_phage	59.5	5.1e-21
>prophage 14
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2755724	2765413	4679033		Salmonella_phage(37.5%)	13	NA	NA
AXB20397.1|2755724_2755880_+	hypothetical protein	NA	M4QQ57	Salicola_phage	55.3	8.0e-08
AXB20398.1|2755985_2756216_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20399.1|2756181_2756379_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20400.1|2756919_2757126_+	Killing protein KilR	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
AXB20401.1|2757201_2757534_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20402.1|2757674_2760641_+	Exodeoxyribonuclease 8	NA	A0A0U2I1R6	Escherichia_phage	40.8	1.2e-195
AXB20403.1|2760637_2761858_+	hypothetical protein	NA	A0A2H4JAZ0	uncultured_Caudovirales_phage	58.5	5.6e-80
AXB20404.1|2762204_2762702_+	hypothetical protein	NA	Q8HAA6	Salmonella_phage	75.7	4.8e-78
AXB20405.1|2762698_2763409_+	hypothetical protein	NA	C6ZR26	Salmonella_phage	97.1	6.7e-33
AXB20406.1|2763396_2763576_+	Double-strand break reduction protein	NA	A0A0U2QL97	Escherichia_phage	62.1	4.3e-13
AXB20407.1|2763674_2764091_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20408.1|2764170_2764407_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20409.1|2764390_2765413_+	hypothetical protein	NA	A0A192Y7M7	Salmonella_phage	50.6	3.3e-89
>prophage 15
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2849680	2860187	4679033		Enterobacteria_phage(37.5%)	10	NA	NA
AXB20497.1|2849680_2850994_-	GDP-4-keto-6-deoxy-D-mannose 3-dehydratase	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
AXB20498.1|2851020_2852100_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	1.0e-16
AXB20499.1|2852104_2852878_-	Glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AXB20500.1|2852893_2853868_-	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase	NA	NA	NA	NA	NA
AXB20501.1|2853873_2854422_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	7.7e-53
AXB20502.1|2854425_2855304_-	Glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	65.2	6.0e-108
AXB20503.1|2855351_2856251_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	4.7e-31
AXB20504.1|2856250_2857336_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
AXB20505.1|2857712_2858606_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AXB20506.1|2858789_2860187_-	hypothetical protein	NA	A0A291LBB9	Klebsiella_phage	26.3	8.9e-21
>prophage 16
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2946390	2957434	4679033	tRNA	Escherichia_phage(50.0%)	7	NA	NA
AXB20579.1|2946390_2947008_-	Anaerobic dimethyl sulfoxide reductase chain B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
AXB20580.1|2947018_2948725_-	Dimethyl sulfoxide reductase DmsA	NA	A0A077SK27	Escherichia_phage	51.0	6.7e-164
AXB20581.1|2948721_2949462_-	Dimethyl sulfoxide reductase DmsA	NA	A0A077SK27	Escherichia_phage	49.0	1.4e-49
AXB20582.1|2949699_2950992_-|tRNA	Serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.5	8.6e-95
AXB20583.1|2951250_2952594_-	Replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.9	1.6e-80
AXB20584.1|2952603_2953215_-	Outer-membrane lipoprotein carrier protein	NA	NA	NA	NA	NA
AXB20585.1|2953357_2957434_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
>prophage 17
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	2970004	2978693	4679033	protease	Thermus_phage(16.67%)	7	NA	NA
AXB20599.1|2970004_2970880_+	hypothetical protein	NA	S6BFN8	Thermus_phage	35.2	4.3e-05
AXB20600.1|2971016_2972030_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20601.1|2972329_2974606_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AXB20602.1|2974636_2974957_-|protease	ATP-dependent Clp protease adapter protein ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AXB20603.1|2975280_2975502_+	Cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXB20604.1|2975631_2977578_-	Macrolide export ATP-binding/permease protein MacB	NA	G9BWD6	Planktothrix_phage	42.0	1.6e-39
AXB20605.1|2977574_2978693_-	Macrolide export protein MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 18
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	3184881	3211212	4679033	tail	Enterobacteria_phage(75.0%)	32	NA	NA
AXB20813.1|3184881_3186597_-	E3 ubiquitin-protein ligase SspH2	NA	Q9MBM1	Phage_Gifsy-1	54.9	8.3e-138
AXB20814.1|3186955_3187132_+	hypothetical protein	NA	A0A0M4S5U3	Salmonella_phage	62.8	2.5e-05
AXB20815.1|3187212_3187644_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20816.1|3187643_3188693_-	hypothetical protein	NA	A0A0A7NPT9	Enterobacteria_phage	73.4	2.5e-153
AXB20817.1|3188692_3190426_-	hypothetical protein	NA	A0A0A7NV54	Enterobacteria_phage	74.8	1.9e-262
AXB20818.1|3190582_3191419_+	hypothetical protein	NA	A0A0A7NRY7	Enterobacteria_phage	65.8	3.4e-100
AXB20819.1|3191442_3192528_+	hypothetical protein	NA	A0A0A7NQ82	Enterobacteria_phage	68.4	2.2e-136
AXB20820.1|3192574_3193405_+	hypothetical protein	NA	A0A0A7NPX9	Enterobacteria_phage	64.7	4.5e-89
AXB20821.1|3193506_3194001_+	hypothetical protein	NA	A0A0A7NPU2	Enterobacteria_phage	58.9	1.4e-50
AXB20822.1|3194000_3194201_+	hypothetical protein	NA	A0A0A7NV57	Enterobacteria_phage	80.3	1.9e-22
AXB20823.1|3194191_3194569_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20824.1|3194565_3195009_+	Lysozyme RrrD	NA	A0A075B8L0	Enterobacteria_phage	64.6	2.4e-44
AXB20825.1|3195015_3195507_+	hypothetical protein	NA	S4TNN7	Salmonella_phage	56.2	1.3e-32
AXB20826.1|3195493_3195742_+	hypothetical protein	NA	A0A0A7NPU6	Enterobacteria_phage	52.4	6.6e-20
AXB20827.1|3195742_3196426_-	hypothetical protein	NA	Q6H9S3	Enterobacteria_phage	34.5	2.6e-18
AXB20828.1|3196428_3196995_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20829.1|3197278_3197914_+	hypothetical protein	NA	A0A0A7NV60	Enterobacteria_phage	59.8	1.0e-64
AXB20830.1|3197910_3198501_+	hypothetical protein	NA	A0A0A7NRZ3	Enterobacteria_phage	68.1	3.1e-68
AXB20831.1|3198497_3198866_+	hypothetical protein	NA	A0A0A7NQ90	Enterobacteria_phage	71.3	6.5e-40
AXB20832.1|3198852_3199749_+	hypothetical protein	NA	A0A0A7NPY5	Enterobacteria_phage	69.1	1.5e-106
AXB20833.1|3199741_3200269_+	hypothetical protein	NA	A0A0A7NPV1	Enterobacteria_phage	61.2	7.1e-56
AXB20834.1|3200274_3202026_+	hypothetical protein	NA	A0A0M3ULF6	Salmonella_phage	61.3	9.3e-177
AXB20835.1|3202022_3202847_+	O-acetyl-ADP-ribose deacetylase	NA	A0A0M4QWS3	Salmonella_phage	91.6	8.9e-146
AXB20836.1|3202836_3203406_+|tail	Prophage tail fiber assembly protein TfaE	tail	A0A0M4RTP2	Salmonella_phage	92.0	1.6e-98
AXB20837.1|3203533_3204022_-	hypothetical protein	NA	A0A0A7NV65	Enterobacteria_phage	79.5	2.5e-71
AXB20838.1|3204035_3207032_-	hypothetical protein	NA	A0A0A7NRZ9	Enterobacteria_phage	51.6	2.7e-256
AXB20839.1|3207146_3207503_-	hypothetical protein	NA	A0A0A7NPZ0	Enterobacteria_phage	52.6	4.4e-17
AXB20840.1|3207545_3208058_-	hypothetical protein	NA	A0A0A7NPV8	Enterobacteria_phage	68.0	7.6e-63
AXB20841.1|3208058_3209246_-|tail	Putative prophage major tail sheath protein	tail	A0A0A7NV69	Enterobacteria_phage	82.2	3.7e-185
AXB20842.1|3209404_3210532_+	hypothetical protein	NA	A0A0A7NQ97	Enterobacteria_phage	77.0	9.9e-156
AXB20843.1|3210577_3210838_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20844.1|3211071_3211212_+	Protein HokA	NA	S5M7Q0	Escherichia_phage	69.6	4.1e-11
>prophage 19
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	3343441	3358747	4679033		Salmonella_phage(20.0%)	27	NA	NA
AXB20970.1|3343441_3343654_+	Cold shock protein YdfK	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
AXB20971.1|3343650_3344064_+	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	98.5	2.5e-72
AXB20972.1|3344299_3344533_+	Cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	97.4	1.4e-35
AXB20973.1|3344806_3345448_+	Glutathione S-transferase GST-6.0	NA	NA	NA	NA	NA
AXB20974.1|3345618_3346137_-	hypothetical protein	NA	A0A0U2QV64	Escherichia_phage	51.4	5.6e-45
AXB20975.1|3346356_3346467_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20976.1|3346444_3346753_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20977.1|3346938_3347181_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20978.1|3347222_3347594_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20979.1|3347590_3347956_-	hypothetical protein	NA	A0A1I9KFD3	Aeromonas_phage	59.5	5.1e-21
AXB20980.1|3348357_3349041_+	hypothetical protein	NA	Q9MBM0	Phage_Gifsy-2	74.4	4.7e-92
AXB20981.1|3349192_3349975_-	hypothetical protein	NA	F1C595	Cronobacter_phage	67.4	5.2e-95
AXB20982.1|3350161_3352180_-	hypothetical protein	NA	A0A1W6JPG0	Morganella_phage	58.8	2.8e-177
AXB20983.1|3352189_3352837_-	hypothetical protein	NA	A0A1B5FPB4	Escherichia_phage	42.9	3.1e-29
AXB20984.1|3352829_3353213_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20985.1|3353302_3353605_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20986.1|3353601_3354396_-	hypothetical protein	NA	F1C5A3	Cronobacter_phage	66.0	1.2e-46
AXB20987.1|3354406_3354667_-	hypothetical protein	NA	A0A0P0ZDC0	Stx2-converting_phage	73.1	2.8e-21
AXB20988.1|3354709_3354937_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20989.1|3354929_3355100_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20990.1|3355092_3355491_-	DNA primase	NA	A0A286SGR4	Klebsiella_phage	55.9	2.4e-11
AXB20991.1|3355483_3355645_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20992.1|3355637_3355925_-	hypothetical protein	NA	A0A2H4JGW3	uncultured_Caudovirales_phage	53.2	6.0e-17
AXB20993.1|3356108_3356294_+	hypothetical protein	NA	NA	NA	NA	NA
AXB20994.1|3356556_3357855_-	hypothetical protein	NA	NA	NA	NA	NA
AXB20995.1|3357851_3358448_-	hypothetical protein	NA	A0A1X9SFL9	Acinetobacter_phage	47.7	4.6e-19
AXB20996.1|3358549_3358747_-	hypothetical protein	NA	A0A1V0E8E5	Vibrio_phage	36.4	6.6e-07
>prophage 20
CP030838	Salmonella enterica subsp. enterica serovar Napoli strain LC0541/17 chromosome, complete genome	4679033	4011676	4021620	4679033	integrase	Enterobacteria_phage(88.89%)	14	4011308:4011321	4021790:4021803
4011308:4011321	attL	CGAAGGCCGGACTC	NA	NA	NA	NA
AXB21625.1|4011676_4014010_-	DNA primase TraC	NA	Q7M2A8	Enterobacteria_phage	82.0	0.0e+00
AXB21626.1|4014024_4014345_-	hypothetical protein	NA	NA	NA	NA	NA
AXB21627.1|4014341_4014602_-	hypothetical protein	NA	NA	NA	NA	NA
AXB21628.1|4014673_4015123_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	68.1	5.7e-46
AXB21629.1|4015115_4015415_-	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	67.7	5.9e-31
AXB21630.1|4015407_4015962_-	hypothetical protein	NA	Q7M2A7	Enterobacteria_phage	74.8	3.0e-36
AXB21631.1|4016016_4016223_-	hypothetical protein	NA	Q7M299	Enterobacteria_phage	58.1	3.0e-10
AXB21632.1|4016775_4017579_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	25.8	6.7e-13
AXB21633.1|4017575_4017818_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	56.8	2.4e-19
AXB21634.1|4017834_4018410_+	hypothetical protein	NA	Q7M2A1	Enterobacteria_phage	51.4	6.6e-39
AXB21635.1|4018801_4019107_+	hypothetical protein	NA	NA	NA	NA	NA
AXB21636.1|4019081_4019726_+	hypothetical protein	NA	NA	NA	NA	NA
AXB21637.1|4019725_4020304_+	hypothetical protein	NA	NA	NA	NA	NA
AXB21638.1|4020342_4021620_-|integrase	Prophage integrase IntA	integrase	B7SYF8	Stenotrophomonas_phage	40.5	1.3e-74
4021790:4021803	attR	CGAAGGCCGGACTC	NA	NA	NA	NA
