assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	1	501411-501496	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	12	501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466|501441-501466	CP030323.1_2002669-2002694|CP030323.1_2139670-2139645|CP030323.1_2679195-2679170|CP030323.1_964771-964746|CP030323.1_1081526-1081551|CP030323.1_1256742-1256767|CP030323.1_1441602-1441577|CP030323.1_2469121-2469146|CP030323.1_2515083-2515058|CP030323.1_2515139-2515114|CP030323.1_1160565-1160540|CP030323.1_1160903-1160878	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|64aa|down_4|CP030323.1_504074_504266_-,NA|166aa|down_6|CP030323.1_504722_505220_+,NA|64aa|down_8|CP030323.1_505826_506018_-	NA|371aa|up_9|CP030323.1_490192_491305_-	TIGR00611, DNA_replication_and_repair_protein_RecF, recF protein	NA|79aa|up_8|CP030323.1_491301_491538_-	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|378aa|up_7|CP030323.1_491927_493061_-	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|454aa|up_6|CP030323.1_493338_494700_-	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|46aa|up_5|CP030323.1_495430_495568_+	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|116aa|up_4|CP030323.1_495694_496042_+	PRK00499, rnpA, ribonuclease P; Reviewed	NA|460aa|up_3|CP030323.1_496185_497565_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|626aa|up_2|CP030323.1_497631_499509_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|240aa|up_1|CP030323.1_499508_500228_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|280aa|up_0|CP030323.1_500270_501110_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|118aa|down_0|CP030323.1_501719_502073_+	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|132aa|down_1|CP030323.1_502140_502536_+	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|190aa|down_2|CP030323.1_502786_503356_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|67aa|down_3|CP030323.1_503482_503683_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|64aa|down_4|CP030323.1_504074_504266_-	NA	NA|114aa|down_5|CP030323.1_504302_504644_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|166aa|down_6|CP030323.1_504722_505220_+	NA	NA|134aa|down_7|CP030323.1_505287_505689_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|64aa|down_8|CP030323.1_505826_506018_-	NA	NA|627aa|down_9|CP030323.1_506110_507991_-	pfam02687, FtsX, FtsX-like permease family
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	4	844474-844566	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CTTTCTAACAAATAAATTTGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|42aa|up_2|CP030323.1_841158_841284_-,NA	NA|453aa|up_9|CP030323.1_834160_835519_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|CP030323.1_835520_836528_+	PRK06256, PRK06256, biotin synthase; Validated	NA|371aa|up_7|CP030323.1_836508_837621_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|CP030323.1_837631_838324_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|CP030323.1_838334_838802_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|CP030323.1_838853_839831_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|CP030323.1_839832_840780_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|42aa|up_2|CP030323.1_841158_841284_-	NA	NA|310aa|up_1|CP030323.1_841347_842277_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_0|CP030323.1_842768_844079_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|289aa|down_0|CP030323.1_844775_845642_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|CP030323.1_845967_846654_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|480aa|down_2|CP030323.1_847085_848525_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_3|CP030323.1_848645_849425_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_4|CP030323.1_849405_850125_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_5|CP030323.1_850121_850853_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_6|CP030323.1_850949_852200_-	pfam02388, FemAB, FemAB family	NA|121aa|down_7|CP030323.1_852454_852817_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_8|CP030323.1_852835_853435_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|84aa|down_9|CP030323.1_853705_853957_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	5	999048-999132	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	999078-999102|999078-999102|999078-999102|999078-999102	CP030323.1_999022-999046|CP030323.1_1412733-1412757|CP030323.1_2139784-2139760|CP030323.1_2139840-2139816	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|40aa|down_4|CP030323.1_1002570_1002690_+,NA|106aa|down_7|CP030323.1_1007897_1008215_-,NA|55aa|down_8|CP030323.1_1008459_1008624_-	NA|202aa|up_9|CP030323.1_991907_992513_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP030323.1_992681_993686_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP030323.1_993716_994223_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP030323.1_994224_994719_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP030323.1_994781_996041_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP030323.1_996037_996523_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP030323.1_996536_996983_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP030323.1_996988_997222_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP030323.1_997228_997828_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP030323.1_997847_998870_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|117aa|down_0|CP030323.1_999506_999857_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_1|CP030323.1_999958_1001170_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_2|CP030323.1_1001162_1001603_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_3|CP030323.1_1001765_1002530_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|40aa|down_4|CP030323.1_1002570_1002690_+	NA	NA|422aa|down_5|CP030323.1_1003161_1004427_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_6|CP030323.1_1004543_1007711_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_7|CP030323.1_1007897_1008215_-	NA	NA|55aa|down_8|CP030323.1_1008459_1008624_-	NA	NA|303aa|down_9|CP030323.1_1008756_1009665_+	COG0679, COG0679, Predicted permeases [General function prediction only]
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	6	1246636-1246721	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	ACAATGTAAGTTGGGGTGGGGCCCCAACA	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|59aa|down_7|CP030323.1_1256403_1256580_+	NA|47aa|up_9|CP030323.1_1236935_1237076_-	pfam05931, AgrD, Staphylococcal AgrD protein	NA|190aa|up_8|CP030323.1_1237072_1237642_-	smart00793, AgrB, Accessory gene regulator B	NA|45aa|up_7|CP030323.1_1237877_1238012_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|CP030323.1_1238610_1239396_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|CP030323.1_1239756_1240383_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|383aa|up_4|CP030323.1_1240579_1241728_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|CP030323.1_1241752_1242496_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|CP030323.1_1242670_1242955_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|CP030323.1_1243030_1244647_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|CP030323.1_1245187_1246495_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|408aa|down_0|CP030323.1_1246935_1248159_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|CP030323.1_1248594_1249650_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|CP030323.1_1249671_1250688_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|331aa|down_3|CP030323.1_1251180_1252173_-	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|479aa|down_4|CP030323.1_1252561_1253998_+	pfam03642, MAP, MAP domain	NA|59aa|down_5|CP030323.1_1254122_1254299_+	pfam03642, MAP, MAP domain	NA|429aa|down_6|CP030323.1_1254577_1255864_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|59aa|down_7|CP030323.1_1256403_1256580_+	NA	NA|127aa|down_8|CP030323.1_1257120_1257501_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|299aa|down_9|CP030323.1_1257497_1258394_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	7	1306355-1306436	5	CRISPRCasFinder	no	DEDDh	WYL,csa3,DEDDh,cas3,DinG	Unclear	AATGCAAGTTGGCGGGGCCCCAACA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|151aa|up_1|CP030323.1_1304218_1304671_+,NA|129aa|down_1|CP030323.1_1307593_1307980_+,NA|92aa|down_6|CP030323.1_1311962_1312238_-	NA|316aa|up_9|CP030323.1_1295776_1296724_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|up_8|CP030323.1_1296804_1298166_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|up_7|CP030323.1_1298335_1298866_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_6|CP030323.1_1299112_1300183_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_5|CP030323.1_1300249_1300804_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|167aa|up_4|CP030323.1_1301194_1301695_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_3|CP030323.1_1301986_1303300_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|CP030323.1_1303301_1304033_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|151aa|up_1|CP030323.1_1304218_1304671_+	NA	NA|329aa|up_0|CP030323.1_1305103_1306090_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP030323.1_1306618_1307377_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP030323.1_1307593_1307980_+	NA	NA|234aa|down_2|CP030323.1_1307994_1308696_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP030323.1_1308692_1309736_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP030323.1_1309725_1310355_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP030323.1_1310467_1311685_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP030323.1_1311962_1312238_-	NA	NA|155aa|down_7|CP030323.1_1312244_1312709_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP030323.1_1312855_1313056_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|221aa|down_9|CP030323.1_1313067_1313730_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	8	1500984-1501063	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	1501008-1501039	CP030323.1_2143903-2143934	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|38aa|up_4|CP030323.1_1496500_1496614_+,NA	NA|165aa|up_9|CP030323.1_1491517_1492012_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|CP030323.1_1492134_1493082_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|CP030323.1_1493169_1494372_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|CP030323.1_1494617_1495118_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|CP030323.1_1495258_1496377_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|38aa|up_4|CP030323.1_1496500_1496614_+	NA	NA|352aa|up_3|CP030323.1_1496692_1497748_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|CP030323.1_1497922_1498612_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|CP030323.1_1498999_1499413_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|CP030323.1_1499617_1500916_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|CP030323.1_1501365_1502307_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|CP030323.1_1502327_1505525_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|CP030323.1_1505974_1507204_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|CP030323.1_1507398_1508256_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|CP030323.1_1508255_1509200_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|CP030323.1_1509468_1510437_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|CP030323.1_1510458_1512216_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|CP030323.1_1512562_1513924_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|CP030323.1_1514271_1515393_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|CP030323.1_1515441_1516710_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	9	1855927-1856006	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAGCTTACAATAAAGTGCAAGTTGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|68aa|down_5|CP030323.1_1864321_1864525_+	NA|160aa|up_9|CP030323.1_1847963_1848443_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|280aa|up_8|CP030323.1_1848457_1849297_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|178aa|up_7|CP030323.1_1849390_1849924_+	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|143aa|up_6|CP030323.1_1849916_1850345_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|167aa|up_5|CP030323.1_1850356_1850857_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|74aa|up_4|CP030323.1_1850856_1851078_+	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|497aa|up_3|CP030323.1_1851269_1852760_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|170aa|up_2|CP030323.1_1853159_1853669_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|357aa|up_1|CP030323.1_1853680_1854751_+	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|205aa|up_0|CP030323.1_1854767_1855382_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|220aa|down_0|CP030323.1_1856523_1857183_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|452aa|down_1|CP030323.1_1857179_1858535_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|933aa|down_2|CP030323.1_1858823_1861622_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|423aa|down_3|CP030323.1_1861635_1862904_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|270aa|down_4|CP030323.1_1863483_1864293_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|68aa|down_5|CP030323.1_1864321_1864525_+	NA	NA|264aa|down_6|CP030323.1_1864705_1865497_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|629aa|down_7|CP030323.1_1865510_1867397_+	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|448aa|down_8|CP030323.1_1867621_1868965_+	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|379aa|down_9|CP030323.1_1869038_1870175_-	pfam05816, TelA, Toxic anion resistance protein (TelA)
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	10	2065269-2065361	8	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|117aa|up_9|CP030323.1_2054921_2055272_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|CP030323.1_2055374_2056112_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|CP030323.1_2056111_2056615_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|CP030323.1_2056802_2057078_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|CP030323.1_2057423_2058791_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|CP030323.1_2058816_2059149_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|CP030323.1_2059135_2060386_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|CP030323.1_2060385_2063952_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|CP030323.1_2064098_2064830_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|CP030323.1_2064945_2065179_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|CP030323.1_2065484_2066219_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|CP030323.1_2066211_2067138_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|CP030323.1_2067130_2068117_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|186aa|down_3|CP030323.1_2068121_2068679_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|CP030323.1_2068895_2070956_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|CP030323.1_2071145_2072792_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|CP030323.1_2072806_2073181_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|CP030323.1_2073623_2073812_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|CP030323.1_2074193_2074835_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|CP030323.1_2074841_2075486_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	11	2478131-2478216	9	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AGAGAAATTGGATTCCCAATTTCTACA	27	1	4	2478158-2478189|2478158-2478189|2478158-2478189|2478158-2478189	CP030323.1_964844-964813|CP030323.1_2002536-2002567|CP030323.1_2002594-2002625|CP030323.1_501367-501398	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA|77aa|up_7|CP030323.1_2469006_2469237_+,NA	NA|337aa|up_9|CP030323.1_2466415_2467426_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_8|CP030323.1_2467478_2468492_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|77aa|up_7|CP030323.1_2469006_2469237_+	NA	NA|210aa|up_6|CP030323.1_2469382_2470012_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_5|CP030323.1_2470714_2471617_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|545aa|up_4|CP030323.1_2471950_2473585_-	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|196aa|up_3|CP030323.1_2473766_2474354_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|CP030323.1_2474923_2475868_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|CP030323.1_2475978_2476974_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|CP030323.1_2476970_2477882_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|CP030323.1_2478531_2479467_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|CP030323.1_2479533_2480973_-	sd00006, TPR, Tetratricopeptide repeat	NA|162aa|down_2|CP030323.1_2480980_2481466_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|CP030323.1_2481473_2482313_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|CP030323.1_2482318_2483251_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|CP030323.1_2483860_2486707_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|CP030323.1_2486714_2488700_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|63aa|down_7|CP030323.1_2488968_2489157_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|CP030323.1_2489201_2489852_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|CP030323.1_2490025_2490865_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCA_003288395.1_ASM328839v1	CP030323	Staphylococcus aureus strain AR_475 chromosome, complete genome	12	2524516-2524600	10	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGTTGGGGCCCACCCCAACTCGCATTG	27	1	1	2524543-2524573	CP030323.1_2483536-2483506	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|254aa|up_9|CP030323.1_2511938_2512700_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|319aa|up_8|CP030323.1_2512696_2513653_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_7|CP030323.1_2513639_2514611_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_6|CP030323.1_2515304_2516276_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_5|CP030323.1_2516393_2518499_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_4|CP030323.1_2518461_2518860_-	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|289aa|up_3|CP030323.1_2519660_2520527_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_2|CP030323.1_2520546_2521047_+	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|502aa|up_1|CP030323.1_2521386_2522892_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|306aa|up_0|CP030323.1_2523163_2524081_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|181aa|down_0|CP030323.1_2524688_2525231_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|353aa|down_1|CP030323.1_2525389_2526448_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|CP030323.1_2526687_2528202_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|326aa|down_3|CP030323.1_2528194_2529172_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|593aa|down_4|CP030323.1_2529393_2531172_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|626aa|down_5|CP030323.1_2531186_2533064_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|162aa|down_6|CP030323.1_2533414_2533900_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|647aa|down_7|CP030323.1_2534083_2536024_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_8|CP030323.1_2536497_2537502_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|237aa|down_9|CP030323.1_2537485_2538196_-	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
