assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003287165.1_ASM328716v1	CP019612	Mycobacterium tuberculosis strain H107 chromosome, complete genome	3	799720-800667	1	CRT	no	csa3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	800503-800538|800503-800538|800503-800538	CP019612.1_548939-548904|CP019612.1_1088270-1088305|CP019612.1_2293265-2293230	NA	19	19	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	NA,NA|60aa|down_0|CP019612.1_800728_800908_+,NA|184aa|down_3|CP019612.1_804677_805229_-,NA|63aa|down_6|CP019612.1_807392_807581_-	NA|685aa|up_9|CP019612.1_787272_789327_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|CP019612.1_789492_790662_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|CP019612.1_790749_791766_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|CP019612.1_791927_792569_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|CP019612.1_792649_793705_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|CP019612.1_793756_794149_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|CP019612.1_794206_794629_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|CP019612.1_794590_794881_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|CP019612.1_794985_795891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|CP019612.1_795909_796725_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|60aa|down_0|CP019612.1_800728_800908_+	NA	NA|883aa|down_1|CP019612.1_800936_803585_-	pfam00934, PE, PE family	NA|215aa|down_2|CP019612.1_804052_804697_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_3|CP019612.1_804677_805229_-	NA	NA|218aa|down_4|CP019612.1_805378_806032_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|CP019612.1_806102_807131_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_6|CP019612.1_807392_807581_-	NA	NA|257aa|down_7|CP019612.1_807819_808590_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_8|CP019612.1_808676_809489_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_9|CP019612.1_809556_810417_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily
GCA_003287165.1_ASM328716v1	CP019612	Mycobacterium tuberculosis strain H107 chromosome, complete genome	8	2986013-2987367	1,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	NA|135aa|up_9|CP019612.1_2978336_2978741_+,NA|64aa|up_8|CP019612.1_2978737_2978929_+,NA|86aa|up_4|CP019612.1_2981873_2982131_+,NA|104aa|up_3|CP019612.1_2982235_2982547_+,NA|203aa|up_2|CP019612.1_2982966_2983575_+,NA	NA|135aa|up_9|CP019612.1_2978336_2978741_+	NA	NA|64aa|up_8|CP019612.1_2978737_2978929_+	NA	NA|385aa|up_7|CP019612.1_2979127_2980282_+	pfam00665, rve, Integrase core domain	NA|109aa|up_6|CP019612.1_2980440_2980767_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|up_5|CP019612.1_2980865_2981702_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|up_4|CP019612.1_2981873_2982131_+	NA	NA|104aa|up_3|CP019612.1_2982235_2982547_+	NA	NA|203aa|up_2|CP019612.1_2982966_2983575_+	NA	NA|470aa|up_1|CP019612.1_2983645_2985055_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP019612.1_2985051_2985864_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|down_0|CP019612.1_2987393_2988230_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_1|CP019612.1_2988328_2988655_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_2|CP019612.1_2990533_2990875_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_3|CP019612.1_2990875_2991892_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_4|CP019612.1_2991904_2993053_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_5|CP019612.1_2993148_2994276_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_6|CP019612.1_2994272_2995181_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_7|CP019612.1_2995161_2995872_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_8|CP019612.1_2995881_2996256_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_9|CP019612.1_2996252_2998691_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCA_003287165.1_ASM328716v1	CP019612	Mycobacterium tuberculosis strain H107 chromosome, complete genome	9	2988690-2990485	7,4,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGA	36,36,35	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	24,24,23	24	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	NA|86aa|up_6|CP019612.1_2981873_2982131_+,NA|104aa|up_5|CP019612.1_2982235_2982547_+,NA|203aa|up_4|CP019612.1_2982966_2983575_+,NA	NA|385aa|up_9|CP019612.1_2979127_2980282_+	pfam00665, rve, Integrase core domain	NA|109aa|up_8|CP019612.1_2980440_2980767_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|up_7|CP019612.1_2980865_2981702_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|86aa|up_6|CP019612.1_2981873_2982131_+	NA	NA|104aa|up_5|CP019612.1_2982235_2982547_+	NA	NA|203aa|up_4|CP019612.1_2982966_2983575_+	NA	NA|470aa|up_3|CP019612.1_2983645_2985055_+	pfam00665, rve, Integrase core domain	NA|271aa|up_2|CP019612.1_2985051_2985864_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|up_1|CP019612.1_2987393_2988230_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|up_0|CP019612.1_2988328_2988655_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_0|CP019612.1_2990533_2990875_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP019612.1_2990875_2991892_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP019612.1_2991904_2993053_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP019612.1_2993148_2994276_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP019612.1_2994272_2995181_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP019612.1_2995161_2995872_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP019612.1_2995881_2996256_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|CP019612.1_2996252_2998691_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP019612.1_2998687_2999632_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP019612.1_2999809_3000355_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCA_003287165.1_ASM328716v1	CP019612	Mycobacterium tuberculosis strain H107 chromosome, complete genome	10	3611312-3611991	5	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	NA|160aa|up_9|CP019612.1_3589702_3590182_+,NA|164aa|down_3|CP019612.1_3625286_3625778_-,NA|79aa|down_6|CP019612.1_3627392_3627629_-	NA|160aa|up_9|CP019612.1_3589702_3590182_+	NA	NA|147aa|up_8|CP019612.1_3590200_3590641_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP019612.1_3590674_3591544_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP019612.1_3591564_3592575_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP019612.1_3592859_3593492_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP019612.1_3593558_3594788_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP019612.1_3595070_3596420_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP019612.1_3596431_3597571_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP019612.1_3597567_3598299_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3114aa|up_0|CP019612.1_3598307_3607649_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP019612.1_3613902_3614160_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|109aa|down_1|CP019612.1_3621301_3621628_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|down_2|CP019612.1_3621726_3622563_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|164aa|down_3|CP019612.1_3625286_3625778_-	NA	NA|164aa|down_4|CP019612.1_3625829_3626321_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_5|CP019612.1_3626357_3627098_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_6|CP019612.1_3627392_3627629_-	NA	NA|3716aa|down_7|CP019612.1_3628016_3639164_-	pfam00823, PPE, PPE family	NA|265aa|down_8|CP019612.1_3639407_3640202_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_9|CP019612.1_3640283_3640655_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
GCA_003287165.1_ASM328716v1	CP019612	Mycobacterium tuberculosis strain H107 chromosome, complete genome	12	3982180-3982268	9	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,RT	NA|257aa|up_8|CP019612.1_3972766_3973537_-,NA|119aa|up_3|CP019612.1_3978671_3979028_+,NA|70aa|up_2|CP019612.1_3978961_3979171_+,NA|233aa|up_0|CP019612.1_3981284_3981983_-,NA|126aa|down_6|CP019612.1_3987503_3987881_+	NA|288aa|up_9|CP019612.1_3971148_3972012_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|CP019612.1_3972766_3973537_-	NA	NA|549aa|up_7|CP019612.1_3973533_3975180_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|CP019612.1_3975176_3976040_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|CP019612.1_3976032_3976959_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|CP019612.1_3976960_3978586_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|CP019612.1_3978671_3979028_+	NA	NA|70aa|up_2|CP019612.1_3978961_3979171_+	NA	NA|652aa|up_1|CP019612.1_3979293_3981249_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP019612.1_3981284_3981983_-	NA	NA|173aa|down_0|CP019612.1_3982328_3982847_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP019612.1_3982847_3983831_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP019612.1_3983823_3985017_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP019612.1_3985022_3985844_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP019612.1_3985975_3986659_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP019612.1_3986658_3987396_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP019612.1_3987503_3987881_+	NA	NA|225aa|down_7|CP019612.1_3987979_3988654_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP019612.1_3988759_3989554_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP019612.1_3989560_3990016_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
