assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	1	109428-110107	1	CRT	no		cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|160aa|up_9|CP019611.1_91361_91841_+,NA|164aa|down_2|CP019611.1_122042_122534_-,NA|79aa|down_5|CP019611.1_124148_124385_-,NA|87aa|down_9|CP019611.1_137544_137805_-	NA|160aa|up_9|CP019611.1_91361_91841_+	NA	NA|147aa|up_8|CP019611.1_91859_92300_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|CP019611.1_92333_93203_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|CP019611.1_93223_94234_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|CP019611.1_94518_95151_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|CP019611.1_95217_96447_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|CP019611.1_96729_98079_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|CP019611.1_98090_99230_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|CP019611.1_99226_99958_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|1948aa|up_0|CP019611.1_99966_105810_-	pfam00823, PPE, PPE family	NA|86aa|down_0|CP019611.1_112018_112276_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|CP019611.1_112531_122005_-	pfam00823, PPE, PPE family	NA|164aa|down_2|CP019611.1_122042_122534_-	NA	NA|164aa|down_3|CP019611.1_122585_123077_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_4|CP019611.1_123113_123854_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|CP019611.1_124148_124385_-	NA	NA|265aa|down_6|CP019611.1_136154_136949_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|CP019611.1_137030_137402_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_8|CP019611.1_137299_137710_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|CP019611.1_137544_137805_-	NA
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	3	482401-482489	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|CP019611.1_472987_473758_-,NA|119aa|up_3|CP019611.1_478892_479249_+,NA|70aa|up_2|CP019611.1_479182_479392_+,NA|233aa|up_0|CP019611.1_481505_482204_-,NA|126aa|down_6|CP019611.1_487724_488102_+	NA|288aa|up_9|CP019611.1_471369_472233_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|CP019611.1_472987_473758_-	NA	NA|549aa|up_7|CP019611.1_473754_475401_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|CP019611.1_475397_476261_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|CP019611.1_476253_477180_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|CP019611.1_477181_478807_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|CP019611.1_478892_479249_+	NA	NA|70aa|up_2|CP019611.1_479182_479392_+	NA	NA|652aa|up_1|CP019611.1_479514_481470_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|CP019611.1_481505_482204_-	NA	NA|173aa|down_0|CP019611.1_482549_483068_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|CP019611.1_483068_484052_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|CP019611.1_484044_485238_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|CP019611.1_485243_486065_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|CP019611.1_486196_486880_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|CP019611.1_486879_487617_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|CP019611.1_487724_488102_+	NA	NA|225aa|down_7|CP019611.1_488200_488875_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|CP019611.1_488978_489773_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|CP019611.1_489779_490235_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	4	1118676-1119474	3	CRT	no		cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|58aa|up_0|CP019611.1_1118191_1118365_-,NA|87aa|down_2|CP019611.1_1126837_1127098_+	NA|398aa|up_9|CP019611.1_1108369_1109563_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|CP019611.1_1109598_1111281_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|CP019611.1_1111297_1113493_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|CP019611.1_1113606_1114740_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|CP019611.1_1114736_1115357_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|CP019611.1_1115453_1116035_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|CP019611.1_1115964_1116690_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|CP019611.1_1116779_1117700_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|CP019611.1_1117739_1118168_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|CP019611.1_1118191_1118365_-	NA	NA|868aa|down_0|CP019611.1_1121539_1124143_-	pfam00934, PE, PE family	NA|804aa|down_1|CP019611.1_1124392_1126804_-	pfam00934, PE, PE family	NA|87aa|down_2|CP019611.1_1126837_1127098_+	NA	NA|537aa|down_3|CP019611.1_1127094_1128705_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_4|CP019611.1_1128728_1129637_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_5|CP019611.1_1129860_1131756_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_6|CP019611.1_1131752_1133369_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_7|CP019611.1_1133365_1137358_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_8|CP019611.1_1137354_1137663_+	pfam00934, PE, PE family	NA|514aa|down_9|CP019611.1_1137665_1139207_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	5	1119860-1119971	1	PILER-CR	no		cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	6	1119933-1119949|1119933-1119949|1119933-1119949|1119933-1119949|1119933-1119949|1119933-1119949	CP019611.1_408541-408557|CP019611.1_1631499-1631483|CP019611.1_1980574-1980590|CP019611.1_2004695-2004679|CP019611.1_3213107-3213123|CP019611.1_3586332-3586348	NA	2	2	Orphan	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|58aa|up_0|CP019611.1_1118191_1118365_-,NA|87aa|down_2|CP019611.1_1126837_1127098_+	NA|398aa|up_9|CP019611.1_1108369_1109563_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|CP019611.1_1109598_1111281_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|CP019611.1_1111297_1113493_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|CP019611.1_1113606_1114740_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|CP019611.1_1114736_1115357_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|CP019611.1_1115453_1116035_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|CP019611.1_1115964_1116690_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|CP019611.1_1116779_1117700_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|CP019611.1_1117739_1118168_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|CP019611.1_1118191_1118365_-	NA	NA|868aa|down_0|CP019611.1_1121539_1124143_-	pfam00934, PE, PE family	NA|804aa|down_1|CP019611.1_1124392_1126804_-	pfam00934, PE, PE family	NA|87aa|down_2|CP019611.1_1126837_1127098_+	NA	NA|537aa|down_3|CP019611.1_1127094_1128705_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_4|CP019611.1_1128728_1129637_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_5|CP019611.1_1129860_1131756_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_6|CP019611.1_1131752_1133369_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_7|CP019611.1_1133365_1137358_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_8|CP019611.1_1137354_1137663_+	pfam00934, PE, PE family	NA|514aa|down_9|CP019611.1_1137665_1139207_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	9	1716110-1717057	5	CRT	no	csa3	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	1716893-1716928|1716893-1716928|1716893-1716928	CP019611.1_1465511-1465476|CP019611.1_2004976-2005011|CP019611.1_3213420-3213385	NA	19	19	Orphan	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|60aa|down_0|CP019611.1_1717118_1717298_+,NA|184aa|down_3|CP019611.1_1721058_1721610_-,NA|63aa|down_6|CP019611.1_1723773_1723962_-	NA|685aa|up_9|CP019611.1_1703746_1705801_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|CP019611.1_1705966_1707136_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|CP019611.1_1707223_1708240_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|CP019611.1_1708401_1709043_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|CP019611.1_1709123_1710179_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|CP019611.1_1710230_1710623_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|CP019611.1_1710680_1711103_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|CP019611.1_1711064_1711355_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|CP019611.1_1711459_1712365_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|CP019611.1_1712383_1713199_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|60aa|down_0|CP019611.1_1717118_1717298_+	NA	NA|880aa|down_1|CP019611.1_1717326_1719966_-	pfam00934, PE, PE family	NA|215aa|down_2|CP019611.1_1720433_1721078_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_3|CP019611.1_1721058_1721610_-	NA	NA|218aa|down_4|CP019611.1_1721759_1722413_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|CP019611.1_1722483_1723512_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_6|CP019611.1_1723773_1723962_-	NA	NA|257aa|down_7|CP019611.1_1724200_1724971_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_8|CP019611.1_1725057_1725870_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_9|CP019611.1_1725937_1726798_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	15	3898323-3899239	3,7,7	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	11,12,12	12	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_9|CP019611.1_3891602_3891794_-,NA|52aa|up_8|CP019611.1_3891776_3891932_+,NA|135aa|up_7|CP019611.1_3892004_3892409_+,NA|64aa|up_6|CP019611.1_3892405_3892597_+,NA|86aa|up_4|CP019611.1_3894183_3894441_+,NA|104aa|up_3|CP019611.1_3894545_3894857_+,NA|203aa|up_2|CP019611.1_3895276_3895885_+,NA	NA|64aa|up_9|CP019611.1_3891602_3891794_-	NA	NA|52aa|up_8|CP019611.1_3891776_3891932_+	NA	NA|135aa|up_7|CP019611.1_3892004_3892409_+	NA	NA|64aa|up_6|CP019611.1_3892405_3892597_+	NA	NA|385aa|up_5|CP019611.1_3892795_3893950_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|CP019611.1_3894183_3894441_+	NA	NA|104aa|up_3|CP019611.1_3894545_3894857_+	NA	NA|203aa|up_2|CP019611.1_3895276_3895885_+	NA	NA|470aa|up_1|CP019611.1_3895955_3897365_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|CP019611.1_3897361_3898174_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|down_0|CP019611.1_3899278_3900115_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_1|CP019611.1_3900213_3900540_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|down_2|CP019611.1_3901132_3901969_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_3|CP019611.1_3902067_3902394_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_4|CP019611.1_3904344_3904686_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_5|CP019611.1_3904686_3905703_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_6|CP019611.1_3905715_3906864_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_7|CP019611.1_3906959_3908087_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_8|CP019611.1_3908083_3908992_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_9|CP019611.1_3908972_3909683_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	16	3900635-3901106	4,8,8	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	5,5,6	6	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_9|CP019611.1_3892004_3892409_+,NA|64aa|up_8|CP019611.1_3892405_3892597_+,NA|86aa|up_6|CP019611.1_3894183_3894441_+,NA|104aa|up_5|CP019611.1_3894545_3894857_+,NA|203aa|up_4|CP019611.1_3895276_3895885_+,NA	NA|135aa|up_9|CP019611.1_3892004_3892409_+	NA	NA|64aa|up_8|CP019611.1_3892405_3892597_+	NA	NA|385aa|up_7|CP019611.1_3892795_3893950_+	pfam00665, rve, Integrase core domain	NA|86aa|up_6|CP019611.1_3894183_3894441_+	NA	NA|104aa|up_5|CP019611.1_3894545_3894857_+	NA	NA|203aa|up_4|CP019611.1_3895276_3895885_+	NA	NA|470aa|up_3|CP019611.1_3895955_3897365_+	pfam00665, rve, Integrase core domain	NA|271aa|up_2|CP019611.1_3897361_3898174_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|up_1|CP019611.1_3899278_3900115_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|up_0|CP019611.1_3900213_3900540_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|down_0|CP019611.1_3901132_3901969_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|down_1|CP019611.1_3902067_3902394_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_2|CP019611.1_3904344_3904686_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_3|CP019611.1_3904686_3905703_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_4|CP019611.1_3905715_3906864_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_5|CP019611.1_3906959_3908087_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_6|CP019611.1_3908083_3908992_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_7|CP019611.1_3908972_3909683_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_8|CP019611.1_3909692_3910067_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_9|CP019611.1_3910063_3912502_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCA_003287145.1_ASM328714v1	CP019611	Mycobacterium tuberculosis strain H83 chromosome, complete genome	17	3902429-3904296	9,9,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	25,25,24	25	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	cas3,DEDDh,csa3,c2c9_V-U4,RT,DinG,WYL,cas4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|86aa|up_8|CP019611.1_3894183_3894441_+,NA|104aa|up_7|CP019611.1_3894545_3894857_+,NA|203aa|up_6|CP019611.1_3895276_3895885_+,NA	NA|385aa|up_9|CP019611.1_3892795_3893950_+	pfam00665, rve, Integrase core domain	NA|86aa|up_8|CP019611.1_3894183_3894441_+	NA	NA|104aa|up_7|CP019611.1_3894545_3894857_+	NA	NA|203aa|up_6|CP019611.1_3895276_3895885_+	NA	NA|470aa|up_5|CP019611.1_3895955_3897365_+	pfam00665, rve, Integrase core domain	NA|271aa|up_4|CP019611.1_3897361_3898174_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|279aa|up_3|CP019611.1_3899278_3900115_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|up_2|CP019611.1_3900213_3900540_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|up_1|CP019611.1_3901132_3901969_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|109aa|up_0|CP019611.1_3902067_3902394_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|114aa|down_0|CP019611.1_3904344_3904686_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|CP019611.1_3904686_3905703_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|CP019611.1_3905715_3906864_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|CP019611.1_3906959_3908087_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|CP019611.1_3908083_3908992_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|CP019611.1_3908972_3909683_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|CP019611.1_3909692_3910067_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|CP019611.1_3910063_3912502_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|CP019611.1_3912498_3913443_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|CP019611.1_3913620_3914166_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
