The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	378	70512	4849628	transposase,protease,tRNA	Paramecium_bursaria_Chlorella_virus(18.18%)	56	NA	NA
AWX16332.1|378_2268_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AWX16333.1|2331_2955_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AWX16334.1|3571_3952_+	ATP F0F1 synthase subunit I	NA	NA	NA	NA	NA
AWX16335.1|3960_4776_+	ATP synthase subunit A	NA	NA	NA	NA	NA
AWX16336.1|4822_5062_+	ATP synthase subunit C	NA	NA	NA	NA	NA
AWX16337.1|5123_5594_+	ATP synthase subunit B	NA	NA	NA	NA	NA
AWX16338.1|5608_6142_+	ATP synthase subunit delta	NA	NA	NA	NA	NA
AWX16339.1|6154_7696_+	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AWX16340.1|7746_8610_+	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AWX16341.1|8636_10019_+	ATP synthase subunit beta	NA	NA	NA	NA	NA
AWX16342.1|10039_10459_+	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AWX16343.1|10430_10610_-	hypothetical protein	NA	NA	NA	NA	NA
AWX16344.1|10809_12180_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	36.7	3.1e-34
AWX16345.1|12341_14171_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.2	4.3e-132
AWX16346.1|14291_15620_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX16347.1|15911_16484_+	fimbrial protein	NA	NA	NA	NA	NA
AWX20500.1|16651_16834_+	pilus assembly protein	NA	NA	NA	NA	NA
AWX16348.1|19042_20211_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AWX16349.1|21849_22923_+	fimbrial protein	NA	NA	NA	NA	NA
AWX16350.1|23170_24211_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	38.3	3.6e-51
AWX16351.1|24297_25257_+	phosphate ABC transporter permease	NA	NA	NA	NA	NA
AWX16352.1|25256_26147_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AWX16353.1|26237_27011_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	1.3e-18
AWX16354.1|27025_27751_+	phosphate-specific transport system accessory protein PhoU	NA	NA	NA	NA	NA
AWX16355.1|28036_28873_+	transcriptional antiterminator BglG	NA	NA	NA	NA	NA
AWX16356.1|29006_30884_+	PTS beta-glucoside transporter subunit EIIBCA	NA	NA	NA	NA	NA
AWX16357.1|31131_31347_-	hypothetical protein	NA	NA	NA	NA	NA
AWX16358.1|32726_33815_+	glycoside hydrolase	NA	NA	NA	NA	NA
AWX16359.1|33900_35517_+	carbohydrate porin	NA	NA	NA	NA	NA
AWX16360.1|35543_35741_+	xylanase	NA	NA	NA	NA	NA
AWX16361.1|35822_37151_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX16362.1|37309_39178_+	low affinity potassium transport system protein kup	NA	M1I6H8	Paramecium_bursaria_Chlorella_virus	30.6	6.0e-65
AWX20501.1|39344_39764_+	D-ribose pyranase	NA	NA	NA	NA	NA
AWX16363.1|39771_41277_+	ribose import ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	26.7	3.0e-14
AWX16364.1|41281_42247_+	ribose ABC transporter permease	NA	NA	NA	NA	NA
AWX20502.1|43283_44213_+	ribokinase	NA	NA	NA	NA	NA
AWX16365.1|44216_45209_+	ribose operon repressor	NA	NA	NA	NA	NA
AWX16366.1|45174_46602_-	MFS transporter	NA	NA	NA	NA	NA
AWX16367.1|46624_47317_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AWX16368.1|53117_53957_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX16369.1|54075_54414_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16370.1|54888_55689_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX16371.1|55685_56858_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX16372.1|56944_57223_-	magnesium chelatase	NA	NA	NA	NA	NA
AWX16373.1|57955_58870_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AWX16374.1|59222_59321_+	IlvGMEDA operon leader peptide	NA	NA	NA	NA	NA
AWX16375.1|59461_61108_+	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.8	6.3e-66
AWX16376.1|61104_61368_+	acetolactate synthase isozyme 2 small subunit	NA	NA	NA	NA	NA
AWX16377.1|61387_62317_+	branched chain amino acid aminotransferase	NA	NA	NA	NA	NA
AWX16378.1|62381_64232_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
AWX16379.1|64234_65779_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
AWX16380.1|65830_66724_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWX16381.1|66873_68349_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AWX16382.1|68435_68717_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AWX16383.1|68915_69254_-	growth inhibitor PemK	NA	NA	NA	NA	NA
AWX16384.1|69238_70512_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 2
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	462170	529737	4849628	transposase,protease,tRNA	Acinetobacter_phage(21.43%)	58	NA	NA
AWX16720.1|462170_463443_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	4.0e-177
AWX16721.1|465695_467342_-	fumarate hydratase class I, anaerobic	NA	NA	NA	NA	NA
AWX16722.1|467419_468760_-	anaerobic C4-dicarboxylate transporter DcuB	NA	NA	NA	NA	NA
AWX16723.1|469330_470050_-	two-component system response regulator DcuR	NA	NA	NA	NA	NA
AWX16724.1|470046_471678_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA	NA
AWX16725.1|471858_472089_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16726.1|472100_472373_+	N-acetyltransferase	NA	NA	NA	NA	NA
AWX16727.1|472459_472675_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16728.1|472599_472896_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16729.1|472923_473097_+	DUF2566 domain-containing protein	NA	NA	NA	NA	NA
AWX16730.1|473215_474733_-|tRNA	lysine--tRNA ligase heat inducible	tRNA	A0A1V0SAC0	Catovirus	38.0	1.6e-87
AWX16731.1|474969_476427_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	29.4	5.2e-48
AWX16732.1|476788_477945_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX16733.1|478903_480177_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX16734.1|481315_481663_-	calcium-binding protein	NA	NA	NA	NA	NA
AWX16735.1|481774_482930_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX16736.1|483035_484364_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX16737.1|484360_485356_-	arginine:agmatine antiporter	NA	NA	NA	NA	NA
AWX16738.1|487544_487763_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16739.1|488056_488632_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX16740.1|488668_490366_-	thiol:disulfide interchange protein DsbD	NA	NA	NA	NA	NA
AWX16741.1|490341_490680_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
AWX16742.1|490795_492097_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA	NA
AWX16743.1|492214_493651_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
AWX16744.1|493987_494458_+	membrane protein FxsA	NA	NA	NA	NA	NA
AWX16745.1|494479_495736_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA	NA
AWX16746.1|496011_496305_+	co-chaperone GroES	NA	K4F9I2	Cronobacter_phage	45.4	9.2e-13
AWX16747.1|496348_497995_+	molecular chaperone GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.9	5.3e-190
AWX16748.1|498132_498486_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16749.1|498688_499456_-	hypothetical protein	NA	NA	NA	NA	NA
AWX16750.1|500724_501753_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA	NA
AWX16751.1|501794_502361_+	elongation factor P	NA	NA	NA	NA	NA
AWX16752.1|502412_502538_+	entericidin A	NA	NA	NA	NA	NA
AWX16753.1|502648_502795_+	entericidin B	NA	NA	NA	NA	NA
AWX16754.1|502969_503287_+	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA	NA
AWX16755.1|503283_503817_-	hypothetical protein	NA	A0A1W6JNX6	Morganella_phage	55.0	2.7e-47
AWX16756.1|503905_505039_-	BlaEC family class C beta-lactamase	NA	NA	NA	NA	NA
AWX16757.1|505101_505461_-	fumarate reductase subunit D	NA	NA	NA	NA	NA
AWX16758.1|505471_505867_-	fumarate reductase subunit C	NA	NA	NA	NA	NA
AWX16759.1|505877_506612_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AWX16760.1|506604_508413_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA	NA
AWX16761.1|508737_509715_+	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9KZX5	Tupanvirus	28.2	6.8e-28
AWX16762.1|509933_510122_+	transporter	NA	NA	NA	NA	NA
AWX16763.1|510854_512213_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA	NA
AWX16764.1|512363_515687_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA	NA
AWX16765.1|515708_516677_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AWX16766.1|516773_517826_-	ribosome small subunit-dependent GTPase	NA	NA	NA	NA	NA
AWX16767.1|517920_518466_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.4	2.2e-28
AWX16768.1|519131_519365_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16769.1|519366_520506_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
AWX16770.1|520504_522052_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AWX16771.1|522023_522485_+|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	tRNA	NA	NA	NA	NA
AWX16772.1|522503_523841_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	31.0	8.8e-18
AWX16773.1|523850_525698_+	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.3	4.4e-60
AWX16774.1|525690_526641_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AWX16775.1|526726_527035_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AWX16776.1|527111_528392_+	GTPase HflX	NA	NA	NA	NA	NA
AWX16777.1|528477_529737_+|protease	protease modulator HflK	protease	A0A1L2CVV0	Pectobacterium_phage	25.5	3.6e-05
>prophage 3
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	583936	646551	4849628	transposase,protease,tRNA	Enterobacteria_phage(16.67%)	53	NA	NA
AWX16831.1|583936_585289_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AWX16832.1|585472_585859_+	soluble cytochrome b562	NA	NA	NA	NA	NA
AWX16833.1|585903_586368_-	anaerobic ribonucleotide reductase-activating protein	NA	H6WXC9	Vibrio_phage	59.7	1.1e-52
AWX16834.1|586525_588664_-	anaerobic ribonucleoside triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.4	1.1e-264
AWX16835.1|589057_590713_-	glucohydrolase	NA	NA	NA	NA	NA
AWX16836.1|590762_592184_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
AWX16837.1|592302_593250_-	trehalose operon repressor	NA	C6ZCU4	Enterobacteria_phage	21.8	7.9e-13
AWX16838.1|593628_596325_+	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.4	9.0e-46
AWX16839.1|596530_596917_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AWX16840.1|596989_597451_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
AWX16841.1|597463_598399_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.2	2.9e-52
AWX16842.1|598402_598537_-	pyrBI operon leader peptide	NA	NA	NA	NA	NA
AWX16843.1|598666_598849_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16844.1|598817_599213_-	hypothetical protein	NA	NA	NA	NA	NA
AWX16845.1|599343_600057_-	oxidoreductase	NA	NA	NA	NA	NA
AWX16846.1|600127_600721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AWX16847.1|600865_601009_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
AWX16848.1|603699_604647_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16849.1|604718_605723_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AWX16850.1|605884_606301_+	regulator of ribonuclease activity B	NA	NA	NA	NA	NA
AWX16851.1|606346_606850_-	N-acetyltransferase	NA	NA	NA	NA	NA
AWX16852.1|607391_608564_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX16853.1|608560_609361_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX16854.1|609832_611029_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
AWX16855.1|611084_613940_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.3e-140
AWX20518.1|613939_614383_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
AWX16856.1|614516_616028_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
AWX16857.1|616294_617395_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
AWX16858.1|617394_618477_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
AWX16859.1|618595_620098_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.6	1.8e-83
AWX16860.1|620175_621174_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX16861.1|621240_622560_-	gluconate permease	NA	NA	NA	NA	NA
AWX16862.1|622624_623389_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AWX16863.1|623412_624444_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
AWX16864.1|624660_625224_+	gluconate kinase	NA	NA	NA	NA	NA
AWX16865.1|625227_626247_-	aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.4	9.3e-44
AWX16866.1|626712_627264_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	41.7	7.5e-32
AWX16867.1|627260_628417_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX16868.1|628694_629862_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AWX16869.1|630378_631146_-	ferric citrate ABC transporter ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	25.2	1.4e-12
AWX16870.1|631146_632103_-	iron-dicitrate transporter subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.8e-17
AWX16871.1|632099_633098_-	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA	NA
AWX16872.1|633094_633997_-	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
AWX16873.1|634041_636366_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AWX16874.1|636452_637406_-	iron dicitrate transport regulator FecR	NA	NA	NA	NA	NA
AWX16875.1|637402_637924_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
AWX16876.1|639006_639703_+|transposase	IS1 family transposase	transposase	A0A077SLN4	Escherichia_phage	98.3	4.0e-131
AWX16877.1|640451_640709_+	biofilm development YmgB/AriR family protein	NA	NA	NA	NA	NA
AWX16878.1|641773_642754_-	sialate O-acetylesterase	NA	Q08JA2	Stx2-converting_phage	56.6	2.7e-101
AWX16879.1|642818_643925_-	N-acetylneuraminate epimerase	NA	NA	NA	NA	NA
AWX16880.1|643944_644661_-	N-acetylneuraminic acid outer membrane channel protein NanC	NA	NA	NA	NA	NA
AWX16881.1|645025_645175_+	hypothetical protein	NA	NA	NA	NA	NA
AWX16882.1|645519_646551_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
>prophage 4
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	892139	949792	4849628	transposase,protease,tRNA	Shigella_phage(22.22%)	51	NA	NA
AWX17079.1|892139_893036_+|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	48.8	1.6e-60
AWX17080.1|893327_894179_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AWX17081.1|894190_894985_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
AWX17082.1|895097_895532_-	pilus protein	NA	NA	NA	NA	NA
AWX17083.1|896480_897753_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX17084.1|898534_899131_-	fimbrial protein StaF	NA	NA	NA	NA	NA
AWX17085.1|899157_899760_-	fimbrial protein StaE	NA	NA	NA	NA	NA
AWX17086.1|899774_900248_-	fimbrial protein	NA	NA	NA	NA	NA
AWX17087.1|900254_901483_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
AWX17088.1|901532_902564_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX17089.1|902576_902735_+	nitrite extrusion protein 2	NA	NA	NA	NA	NA
AWX17090.1|903628_904648_-	outer membrane usher protein htrE	NA	NA	NA	NA	NA
AWX17091.1|906623_907364_-	fimbrial chaperone	NA	NA	NA	NA	NA
AWX17092.1|907468_908053_-	fimbrial protein	NA	NA	NA	NA	NA
AWX17093.1|908422_908902_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AWX17094.1|908898_910317_-	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.9	3.2e-26
AWX17095.1|910355_911282_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
AWX17096.1|911318_911774_-	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA	NA
AWX17097.1|911951_912656_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
AWX17098.1|912670_913201_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
AWX17099.1|913274_915704_+	ATP-dependent helicase	NA	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	29.1	1.0e-40
AWX17100.1|915706_915913_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17101.1|915899_918434_+	penicillin-binding protein 1B	NA	NA	NA	NA	NA
AWX17102.1|918653_920843_+	ferrichrome porin FhuA	NA	NA	NA	NA	NA
AWX17103.1|920893_921691_+	iron-hydroxamate transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	26.9	6.0e-14
AWX17104.1|921690_922581_+	iron-hydroxamate transporter substrate-binding subunit	NA	NA	NA	NA	NA
AWX17105.1|922577_924560_+	Fe3+-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA	NA
AWX17106.1|924717_925998_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
AWX17107.1|926222_927644_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
AWX17108.1|927725_928070_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	51.4	4.5e-27
AWX17109.1|928116_928740_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17110.1|928777_929578_-	cobalamin-binding protein	NA	NA	NA	NA	NA
AWX17111.1|929570_930269_-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
AWX17112.1|930352_931213_+	dGTPase	NA	NA	NA	NA	NA
AWX17113.1|931948_932647_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA	NA
AWX17114.1|932776_934201_+|protease	periplasmic serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.8	1.9e-26
AWX17115.1|934355_935513_+	carbohydrate diacid regulon transcriptional regulator CdaR	NA	NA	NA	NA	NA
AWX17116.1|935601_935988_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17117.1|936149_936962_-	phosphodiesterase	NA	NA	NA	NA	NA
AWX17118.1|937016_937841_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AWX17119.1|937871_940544_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AWX17120.1|940605_941400_-	methionine aminopeptidase	NA	NA	NA	NA	NA
AWX17121.1|941767_942493_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AWX17122.1|942444_942732_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17123.1|942750_943602_+	elongation factor Ts	NA	NA	NA	NA	NA
AWX17124.1|943748_944474_+	UMP kinase	NA	NA	NA	NA	NA
AWX17125.1|944765_945323_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AWX17126.1|945414_946611_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AWX17127.1|946799_947558_+	(2E,6E)-farnesyl- diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	44.4	7.7e-27
AWX17128.1|947570_948428_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AWX17129.1|948439_949792_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 5
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	999067	1058508	4849628	transposase	Enterobacteria_phage(25.0%)	49	NA	NA
AWX17167.1|999067_1000341_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX17168.1|1000337_1001957_-	type VI secretion protein	NA	NA	NA	NA	NA
AWX17169.1|1002035_1003448_-	type VI secretion system ImpA domain-containing protein	NA	NA	NA	NA	NA
AWX17170.1|1003452_1004196_-	type VI secretion system-associated protein	NA	NA	NA	NA	NA
AWX17171.1|1006996_1007758_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17172.1|1007762_1009094_-	type VI secretion system-associated protein	NA	NA	NA	NA	NA
AWX17173.1|1009096_1009621_-	type VI secretion system-associated lipoprotein	NA	NA	NA	NA	NA
AWX17174.1|1009617_1010898_-	type VI secretion system protein ImpI	NA	NA	NA	NA	NA
AWX17175.1|1010922_1012005_-	type VI secretion protein	NA	NA	NA	NA	NA
AWX17176.1|1011968_1013819_-	type VI secretion system ImpG/VasA family protein	NA	NA	NA	NA	NA
AWX17177.1|1013822_1014236_-	type VI secretion protein	NA	NA	NA	NA	NA
AWX17178.1|1015768_1015993_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17179.1|1016027_1016528_-	type VI secretion system-associated protein	NA	NA	NA	NA	NA
AWX17180.1|1017224_1017743_+	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
AWX17181.1|1017775_1017913_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17182.1|1017952_1020094_+	type IV secretion protein Rhs	NA	A0A077K8Q4	Ralstonia_phage	25.2	2.8e-26
AWX17183.1|1020169_1024378_+	type IV secretion protein Rhs	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	44.2	1.1e-21
AWX20531.1|1024389_1024839_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17184.1|1025171_1025927_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AWX17185.1|1025943_1027479_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.7	1.7e-102
AWX20532.1|1029399_1029513_+	ABC transporter	NA	NA	NA	NA	NA
AWX17186.1|1029551_1030532_-|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX17187.1|1030576_1030906_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17188.1|1031374_1032511_+|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AWX17189.1|1032552_1033323_-	amidohydrolase	NA	NA	NA	NA	NA
AWX17190.1|1033476_1033950_+	C-lysozyme inhibitor	NA	NA	NA	NA	NA
AWX17191.1|1033992_1036437_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AWX17192.1|1036676_1037255_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
AWX17193.1|1037460_1038228_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
AWX17194.1|1038198_1038939_-	transpeptidase	NA	NA	NA	NA	NA
AWX17195.1|1039094_1039373_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA	NA
AWX17196.1|1039375_1039636_-	type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA	NA	NA	NA	NA
AWX17197.1|1039845_1040595_+	peptidoglycan endopeptidase	NA	A0A1V0DZX6	Clostridioides_phage	37.7	1.2e-19
AWX17198.1|1041250_1042051_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX17199.1|1042047_1043220_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	6.3e-230
AWX17200.1|1043968_1044466_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17201.1|1044588_1046328_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA	NA
AWX20533.1|1046287_1047058_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
AWX17202.1|1047128_1048184_+	DNA polymerase IV	NA	NA	NA	NA	NA
AWX17203.1|1048180_1048633_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AWX17204.1|1048667_1048931_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17205.1|1048851_1049445_+	RNA ligase RtcB family protein	NA	A0A0A0RRX9	Bacillus_phage	31.1	1.6e-08
AWX17206.1|1051472_1052087_+	peptide chain release factor H	NA	NA	NA	NA	NA
AWX17207.1|1052143_1053601_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
AWX17208.1|1053861_1054320_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
AWX17209.1|1054411_1055656_+	esterase	NA	NA	NA	NA	NA
AWX17210.1|1055713_1056115_+	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
AWX17211.1|1056153_1057209_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
AWX17212.1|1057476_1058508_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
>prophage 6
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	1062955	1103415	4849628	transposase	Acinetobacter_phage(21.43%)	33	NA	NA
AWX17216.1|1062955_1064112_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX17217.1|1064575_1065744_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AWX17218.1|1066115_1067147_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX17219.1|1068097_1069069_+	hypothetical protein	NA	I7HJD8	Enterobacteria_phage	32.7	5.6e-14
AWX17220.1|1069223_1070379_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	3.4e-66
AWX17221.1|1070801_1071746_-	2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase	NA	NA	NA	NA	NA
AWX17222.1|1071747_1073412_-	3-(3-hydroxyphenyl)propionate hydroxylase	NA	NA	NA	NA	NA
AWX20534.1|1074363_1075446_+	lactose operon repressor	NA	C6ZCU4	Enterobacteria_phage	100.0	7.5e-193
AWX17223.1|1075568_1078643_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	97.9	0.0e+00
AWX17224.1|1078694_1078991_+	lactose permease	NA	NA	NA	NA	NA
AWX20535.1|1079726_1079882_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17225.1|1079836_1080532_-	lactate utilization protein C	NA	NA	NA	NA	NA
AWX17226.1|1080524_1081952_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
AWX17227.1|1081962_1082682_-	oxidoreductase	NA	NA	NA	NA	NA
AWX17228.1|1083209_1084064_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AWX17229.1|1084289_1085615_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	1.1e-113
AWX17230.1|1085723_1085960_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AWX17231.1|1085971_1086565_+	protein RclC	NA	NA	NA	NA	NA
AWX17232.1|1086724_1087609_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.4	2.8e-52
AWX17233.1|1087854_1089083_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
AWX17234.1|1089127_1090284_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX17235.1|1090299_1090857_+	2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase	NA	NA	NA	NA	NA
AWX17236.1|1090866_1091676_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
AWX17237.1|1091672_1092623_+	acetaldehyde dehydrogenase	NA	G9E526	Ostreococcus_lucimarinus_virus	35.2	8.7e-36
AWX17238.1|1092619_1093633_+	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	30.8	7.1e-44
AWX17239.1|1093818_1095030_+	3-(3-hydroxy-phenyl)propionate transporter MhpT	NA	NA	NA	NA	NA
AWX17240.1|1095131_1095671_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17241.1|1095896_1096730_-	S-formylglutathione hydrolase FrmB	NA	NA	NA	NA	NA
AWX17242.1|1096822_1097932_-	S-(hydroxymethyl)glutathione dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.6	1.2e-31
AWX17243.1|1097966_1098242_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX17244.1|1098429_1099203_-	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA	NA
AWX17245.1|1100970_1101642_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
AWX17246.1|1102141_1103415_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 7
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	1478443	1569477	4849628	transposase,head,lysis,integrase,terminase,tail	Salmonella_phage(16.67%)	90	1505832:1505891	1530183:1530888
AWX17570.1|1478443_1479616_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX17571.1|1479612_1480413_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX17572.1|1480494_1480638_+	quinolinate synthetase	NA	NA	NA	NA	NA
AWX17573.1|1480675_1481395_+	nicotinamide riboside transporter PnuC	NA	A0A126HGA3	Vibrio_phage	32.7	9.2e-22
AWX17574.1|1481391_1482333_-	zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	28.4	7.5e-24
AWX17575.1|1482446_1482827_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17576.1|1483142_1484195_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A2I6UFP9	Klebsiella_phage	49.4	8.9e-82
AWX17577.1|1484353_1485106_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
AWX17578.1|1485308_1486349_-	galactose-1-epimerase	NA	NA	NA	NA	NA
AWX17579.1|1486342_1487491_-	galactokinase	NA	NA	NA	NA	NA
AWX17580.1|1487494_1488541_-	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AWX17581.1|1488550_1489567_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	46.0	1.0e-79
AWX17582.1|1489827_1491300_-	molybdate ABC transporter ATP-binding protein ModF	NA	A0A1M7XV31	Cedratvirus	28.3	7.2e-13
AWX17583.1|1491367_1492156_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AWX17584.1|1492284_1492434_+	multidrug efflux pump accessory protein AcrZ	NA	NA	NA	NA	NA
AWX17585.1|1492599_1493373_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWX17586.1|1493372_1494062_+	molybdenum ABC transporter permease	NA	NA	NA	NA	NA
AWX17587.1|1494064_1495123_+	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	35.9	1.5e-20
AWX17588.1|1495123_1495252_-	hydrolase	NA	NA	NA	NA	NA
AWX20546.1|1495428_1495872_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	49.3	9.9e-35
AWX17589.1|1495949_1497105_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX17590.1|1497494_1497782_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17591.1|1498031_1498244_-	Hok/Gef family protein	NA	A0A0P0ZAX5	Stx2-converting_phage	90.0	4.0e-26
AWX17592.1|1498414_1499080_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17593.1|1499248_1499605_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.4e-58
AWX17594.1|1499662_1500085_-	hypothetical protein	NA	A0A2I6TCA7	Escherichia_phage	76.6	5.9e-53
AWX17595.1|1500099_1500846_-	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	81.7	2.0e-112
AWX17596.1|1501530_1502804_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
AWX17597.1|1502959_1504115_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX17598.1|1504748_1504976_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX17599.1|1505052_1505460_+	transcriptional regulator	NA	I6PD69	Cronobacter_phage	49.6	1.7e-28
AWX17600.1|1505663_1505819_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	1.8e-07
1505832:1505891	attL	TGAGGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCT	NA	NA	NA	NA
AWX17601.1|1506545_1507714_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AWX17602.1|1507827_1508124_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17603.1|1510005_1511279_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
AWX17604.1|1511347_1511845_+	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	96.4	3.9e-88
AWX17605.1|1511841_1512312_+|lysis	lysis protein	lysis	Q9AZ06	Salmonella_phage	94.8	2.2e-72
AWX17606.1|1512400_1512910_-	DedA family protein	NA	NA	NA	NA	NA
AWX17607.1|1513107_1513872_+	hypothetical protein	NA	G8C7P2	Escherichia_phage	53.8	5.9e-11
AWX17608.1|1513822_1515226_+|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.0	1.2e-187
AWX17609.1|1515502_1516534_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX17610.1|1516593_1516758_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	94.4	2.1e-22
AWX17611.1|1516764_1517847_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	89.4	3.4e-185
AWX17612.1|1517737_1518481_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	84.4	5.3e-89
AWX17613.1|1518484_1519705_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	86.1	4.5e-194
AWX17614.1|1519708_1520215_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	79.9	3.7e-70
AWX17615.1|1521014_1521146_+	DNA invertase	NA	A0A0C4UR34	Shigella_phage	84.4	8.8e-08
AWX17616.1|1521405_1522401_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AWX17617.1|1522441_1523395_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWX17618.1|1524349_1526530_+	hydratase	NA	NA	NA	NA	NA
AWX17619.1|1526763_1528047_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AWX20547.1|1528181_1528874_-|integrase	integrase	integrase	K7P6P6	Enterobacteria_phage	99.1	1.6e-124
AWX17620.1|1529021_1530178_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX17621.1|1530193_1531447_+|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	40.2	1.3e-63
1530183:1530888	attR	AGCTCCTTCTGATGCCATTCTATTTCAGGAAGGAGTGTCCGTTAAACTCAGGCTACCTCATTATTCTGAAATCCCGGGTAAACACCCCGGAAGTGGTGATGCACACTGTTGCTGATGTGATGACAGGAAACGATGGTGAATACTGTTTCCATGCGCGGACTGGAAAATATGGTGTGTATCTGAAACCGGGCTGGCACAACGAGTACAACGTTGGCGACATTGCTGTATATGAGGACTCAAAGCCCGGCACGCTGAATGACTTTCTGATTGCTCCTGATGAGGGCGACCTGAAACCGGATGTCGTCAAACGCTTTGAGGAAATGGTGGCGCAGGCGCAGCAGAGCGCCGGGGCCGCAGCCGGAAACGCACAGCAGACGGCGCAGGATGTGGCGGCAGCCGCAGGTTATGCCCGCGCAGCAGAGCAGGCCAAAAATGACATTGATGCTGCGCTGACCGGCACTCTGAAAACGGCTAACCATCTGTCTGAAATCGCAGCAGCAGGCGAAAAGGCACAACAGAAGTCCCGGGATAATCTGGGGCTGAAAAGTGCGGCCACGATGGAAGCACAGAGCGACATTTACGACCGGACAAAAGGCCGTCTGGCGATACCCGGCGCATTCGGCTTTGGGTGTGCTTTTCTGCCTGAAGATGTTATCCGTTTTGACACTAAGAGTGATTTCCTGGCCTGGGTAAGGAATGCGCTGCC	NA	NA	NA	NA
AWX17622.1|1531397_1532021_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	76.5	5.4e-79
AWX17623.1|1532020_1532200_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17624.1|1532200_1533964_-	invasion plasmid antigen	NA	NA	NA	NA	NA
AWX17625.1|1534451_1534631_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17626.1|1534545_1535022_-	kinase inhibitor	NA	NA	NA	NA	NA
AWX17627.1|1535080_1536370_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.5	9.1e-20
AWX17628.1|1536456_1537497_+	biotin synthase	NA	NA	NA	NA	NA
AWX17629.1|1537493_1538648_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AWX17630.1|1538634_1539390_+	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA	NA
AWX17631.1|1539382_1540060_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AWX17632.1|1540638_1542660_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AWX17633.1|1542561_1542789_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17634.1|1542851_1543760_-	hypothetical protein	NA	A1IMD5	Streptococcus_phage	31.1	1.4e-27
AWX17635.1|1544156_1545146_+	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA	NA
AWX17636.1|1545167_1545680_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA	NA
AWX17637.1|1545682_1546168_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AWX17638.1|1546160_1546406_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
AWX17639.1|1546407_1546860_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AWX17640.1|1546996_1547701_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17641.1|1549394_1550636_-	cardiolipin synthase B	NA	NA	NA	NA	NA
AWX17642.1|1550632_1551394_-	EEP domain-containing protein	NA	NA	NA	NA	NA
AWX17643.1|1551526_1551937_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17644.1|1551898_1553005_-	inner membrane transport permease YbhR	NA	NA	NA	NA	NA
AWX17645.1|1553015_1554149_-	inner membrane transport permease YbhS	NA	NA	NA	NA	NA
AWX17646.1|1554141_1555878_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	1.8e-18
AWX17647.1|1555870_1556869_-	secretion protein HlyD	NA	NA	NA	NA	NA
AWX20548.1|1556868_1557540_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX17648.1|1557768_1559133_+	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.2	1.9e-52
AWX17649.1|1559364_1559847_-	Swarming motility protein YbiA	NA	A0A0H3TLU0	Faustovirus	52.0	1.7e-35
AWX17650.1|1559966_1562117_+	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	26.1	6.3e-42
AWX17651.1|1562144_1563107_+	DNA-binding protein YbiB	NA	NA	NA	NA	NA
AWX17652.1|1563247_1564333_+	dehydrogenase	NA	NA	NA	NA	NA
AWX17653.1|1564561_1564822_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17654.1|1565086_1565353_-	hypothetical protein	NA	E5G6L7	Salmonella_phage	45.6	6.9e-07
AWX17655.1|1565426_1566104_-	PKHD-type hydroxylase	NA	Q5GQB0	Synechococcus_phage	29.7	5.8e-18
AWX17656.1|1568148_1569477_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	1661717	1733808	4849628	integrase,transposase,protease,tRNA	Bacillus_phage(22.22%)	58	1654157:1654216	1698629:1699397
1654157:1654216	attL	AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG	NA	NA	NA	NA
AWX17737.1|1661717_1662956_+|integrase	integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	53.0	1.5e-125
AWX17738.1|1664142_1664352_+	AlpA family phage regulatory protein	NA	A0A2H4JB58	uncultured_Caudovirales_phage	67.9	3.7e-16
AWX17739.1|1664362_1665178_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17740.1|1665203_1665401_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
AWX17741.1|1665393_1665714_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17742.1|1665720_1666020_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
AWX17743.1|1666016_1667819_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	50.4	2.0e-129
AWX17744.1|1668122_1668368_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17745.1|1668364_1668787_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
AWX17746.1|1669255_1669450_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20551.1|1671280_1671535_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17747.1|1671572_1671854_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17748.1|1672106_1672352_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17749.1|1672493_1672814_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
AWX17750.1|1672844_1675121_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
AWX20552.1|1675129_1675351_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17751.1|1675867_1676086_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AWX17752.1|1676370_1677075_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
AWX17753.1|1677116_1678838_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	26.2	4.0e-23
AWX17754.1|1678838_1680605_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	22.3	5.4e-23
AWX17755.1|1680727_1681693_-	thioredoxin reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
AWX17756.1|1682237_1682732_+	leucine-responsive transcriptional regulator	NA	NA	NA	NA	NA
AWX17757.1|1682866_1686934_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
AWX17758.1|1687088_1687700_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AWX17759.1|1687710_1689054_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.6	3.6e-80
AWX17760.1|1689144_1690437_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
AWX17761.1|1690675_1693120_+	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.8	8.6e-221
AWX17762.1|1693130_1693748_+	dimethyl sulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
AWX17763.1|1693749_1694613_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
AWX17764.1|1694648_1695275_-	hydrolase	NA	NA	NA	NA	NA
AWX17765.1|1695589_1696738_+	MFS transporter	NA	NA	NA	NA	NA
AWX17766.1|1700163_1700340_+	NAD(P)H oxidoreductase	NA	NA	NA	NA	NA
1698629:1699397	attR	AGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACTGCACGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC	NA	NA	NA	NA
AWX17767.1|1700432_1701173_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
AWX17768.1|1701364_1703647_-	formate acetyltransferase 1	NA	A0A2P0VNR5	Tetraselmis_virus	41.5	1.0e-162
AWX17769.1|1703701_1704559_-	formate transporter FocA	NA	NA	NA	NA	NA
AWX20553.1|1704964_1706725_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
AWX17770.1|1706854_1707547_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
AWX17771.1|1707745_1708834_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
AWX17772.1|1708904_1710188_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AWX17773.1|1710331_1711660_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX17774.1|1711795_1712560_+|protease	metalloprotease	protease	NA	NA	NA	NA
AWX17775.1|1712732_1713416_+	cytidylate kinase	NA	NA	NA	NA	NA
AWX17776.1|1713526_1715200_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AWX17777.1|1715359_1715644_+	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
AWX17778.1|1715850_1718115_+	ComEC family protein	NA	NA	NA	NA	NA
AWX17779.1|1718151_1719900_+	lipid A export ATP-binding/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	2.5e-57
AWX17780.1|1719896_1720883_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AWX17781.1|1720919_1722152_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AWX17782.1|1722203_1722386_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17783.1|1722382_1723129_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AWX17784.1|1723282_1724176_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17785.1|1724152_1724932_-	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
AWX17786.1|1724834_1724999_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17787.1|1725067_1725853_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
AWX17788.1|1725849_1727172_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
AWX17789.1|1727152_1727857_+	condensin subunit E	NA	NA	NA	NA	NA
AWX17790.1|1727856_1732317_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
AWX17791.1|1732479_1733808_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	1770454	1891586	4849628	transposase,protease,tail	Enterobacteria_phage(19.23%)	116	NA	NA
AWX17819.1|1770454_1772215_-|protease	ATP-dependent protease	protease	NA	NA	NA	NA
AWX17820.1|1772400_1772853_+	macrodomain Ter protein	NA	NA	NA	NA	NA
AWX20557.1|1772928_1773969_-	outer membrane protein A	NA	NA	NA	NA	NA
AWX17821.1|1774121_1774340_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17822.1|1774323_1774833_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
AWX17823.1|1775051_1775681_+	protein Sxy	NA	NA	NA	NA	NA
AWX17824.1|1775643_1777797_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AWX17825.1|1777815_1778262_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17826.1|1778384_1780439_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.9	5.9e-21
AWX17827.1|1780470_1780929_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AWX17828.1|1781024_1781687_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17829.1|1782636_1783050_+	CoA-binding protein	NA	NA	NA	NA	NA
AWX17830.1|1783094_1783412_-	heat-shock protein HspQ	NA	NA	NA	NA	NA
AWX17831.1|1784754_1785033_+	acylphosphatase	NA	NA	NA	NA	NA
AWX17832.1|1785029_1785359_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
AWX17833.1|1785449_1786109_-	BAX inhibitor protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	54.9	5.2e-48
AWX17834.1|1787605_1788724_+	[Ni/Fe] hydrogenase small subunit	NA	NA	NA	NA	NA
AWX17835.1|1788720_1790514_+	hydrogenase-1 large chain	NA	NA	NA	NA	NA
AWX17836.1|1791235_1791823_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
AWX17837.1|1791819_1792158_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA	NA
AWX17838.1|1792214_1793072_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
AWX17839.1|1793205_1794750_+	cytochrome bd-II ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AWX17840.1|1794761_1795898_+	cytochrome bd-II ubiquinol oxidase subunit 2	NA	NA	NA	NA	NA
AWX17841.1|1795910_1796003_+	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA	NA
AWX20558.1|1796082_1797381_+	periplasmic AppA protein	NA	NA	NA	NA	NA
AWX17842.1|1797495_1799676_-	tyrosine-protein kinase etk	NA	NA	NA	NA	NA
AWX17843.1|1799695_1800142_-	protein-tyrosine-phosphatase	NA	NA	NA	NA	NA
AWX17844.1|1800129_1801269_-	polysaccharide export protein Wza	NA	NA	NA	NA	NA
AWX17845.1|1801314_1803411_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AWX17846.1|1803410_1804157_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17847.1|1804153_1804798_-	regulator	NA	NA	NA	NA	NA
AWX17848.1|1804904_1805210_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17849.1|1805656_1805869_-	cold-shock protein CspH	NA	NA	NA	NA	NA
AWX20559.1|1805850_1805979_+	ABC transporter	NA	NA	NA	NA	NA
AWX17850.1|1806017_1806998_-|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX17851.1|1807051_1807258_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	71.0	1.8e-18
AWX20560.1|1807268_1807457_+	cold-shock protein	NA	NA	NA	NA	NA
AWX17852.1|1807431_1807662_+	cold-shock protein	NA	NA	NA	NA	NA
AWX17853.1|1807651_1807825_+	protein GnsA	NA	NA	NA	NA	NA
AWX17854.1|1809018_1811763_-	TMAO reductase system sensor histidine kinase/response regulator TorS	NA	A0A1V0SGX0	Hokovirus	31.9	1.0e-36
AWX17855.1|1811845_1812874_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
AWX17856.1|1812846_1813539_-	two-component system response regulator TorR	NA	W8CYM9	Bacillus_phage	28.0	4.5e-18
AWX17857.1|1813658_1814831_+	pentaheme c-type cytochrome TorC	NA	NA	NA	NA	NA
AWX17858.1|1815893_1817780_+	trimethylamine N-oxide reductase catalytic subunit TorA	NA	A0A077SK27	Escherichia_phage	32.1	4.7e-41
AWX20561.1|1817872_1818178_-	chaperone modulatory protein CbpM	NA	NA	NA	NA	NA
AWX17859.1|1818177_1819098_-	curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	43.0	5.5e-11
AWX17860.1|1819341_1820373_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX17861.1|1820385_1820586_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17862.1|1820624_1821605_-|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX17863.1|1823153_1824395_+	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA	NA
AWX17864.1|1824432_1824660_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17865.1|1824680_1825286_-	NAD(P)H dehydrogenase (quinone)	NA	NA	NA	NA	NA
AWX17866.1|1825787_1827060_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX17867.1|1827045_1828317_+	resolvase	NA	NA	NA	NA	NA
AWX17868.1|1828440_1829196_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AWX17869.1|1829212_1830748_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.6	5.1e-102
AWX17870.1|1831829_1834010_-|tail	phage tail tape measure protein	tail	D2K036	Staphylococcus_phage	28.0	4.4e-59
AWX17871.1|1834108_1834315_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17872.1|1834339_1835050_-|transposase	transposase	transposase	NA	NA	NA	NA
AWX17873.1|1835525_1835831_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17874.1|1835977_1836193_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17875.1|1836192_1836414_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17876.1|1836413_1836704_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17877.1|1837027_1837324_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17878.1|1837323_1838277_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17879.1|1838659_1839322_-	DNA methylase	NA	NA	NA	NA	NA
AWX17880.1|1839837_1840407_+	resolvase	NA	A0A219Y9V9	Aeromonas_phage	37.1	3.1e-20
AWX17881.1|1841134_1841242_+	hypothetical protein	NA	Q9KX95	Enterobacteria_phage	100.0	3.4e-10
AWX17882.1|1841499_1842828_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	99.1	1.1e-233
AWX17883.1|1842848_1843343_-	FMN reductase	NA	Q9KX93	Enterobacteria_phage	96.9	1.1e-50
AWX17884.1|1843353_1843944_-	nitroreductase family protein	NA	NA	NA	NA	NA
AWX17885.1|1843953_1844754_-	pyrimidine utilization protein D	NA	NA	NA	NA	NA
AWX20562.1|1845935_1846628_-	peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	NA	NA	NA	NA	NA
AWX17886.1|1846627_1847254_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AWX20563.1|1847986_1848499_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AWX20564.1|1848425_1848605_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17887.1|1848783_1849422_+	pyrimidine utilization regulatory protein R	NA	NA	NA	NA	NA
AWX17888.1|1849461_1853424_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AWX17889.1|1853845_1855354_+	sodium:proline symporter	NA	NA	NA	NA	NA
AWX17890.1|1855428_1855686_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17891.1|1856019_1856850_+	ferrous iron permease EfeU	NA	NA	NA	NA	NA
AWX17892.1|1856907_1858035_+	iron uptake system component EfeO	NA	NA	NA	NA	NA
AWX17893.1|1858040_1859312_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
AWX17894.1|1859656_1860721_+	phosphate starvation protein PhoH	NA	R4II13	Cronobacter_phage	76.2	3.4e-89
AWX17895.1|1861301_1861988_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
AWX17896.1|1862580_1863519_+	bifunctional glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
AWX17897.1|1863573_1864311_+	phosphatase	NA	NA	NA	NA	NA
AWX17898.1|1864334_1864889_+	molecular chaperone	NA	NA	NA	NA	NA
AWX17899.1|1864990_1865482_+	hypothetical protein	NA	NA	NA	NA	NA
AWX17900.1|1865546_1866380_-	curli production assembly/transport protein CsgG	NA	M1ICK2	Pelagibacter_phage	39.7	4.3e-39
AWX17901.1|1866406_1866823_-	curli production assembly/transport component CsgF	NA	NA	NA	NA	NA
AWX17902.1|1866847_1867237_-	curli production assembly/transport component CsgE	NA	NA	NA	NA	NA
AWX17903.1|1867241_1867754_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AWX17904.1|1868519_1868669_-	curlin	NA	NA	NA	NA	NA
AWX20565.1|1868884_1869064_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17905.1|1869421_1869877_+	minor curlin subunit	NA	NA	NA	NA	NA
AWX17906.1|1869917_1870370_+	curlin	NA	NA	NA	NA	NA
AWX17907.1|1870485_1871658_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX17908.1|1871654_1872455_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX17909.1|1872561_1872894_+	curli assembly protein CsgC	NA	NA	NA	NA	NA
AWX17910.1|1873014_1873326_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
AWX17911.1|1873420_1873954_+	O-acetyl-ADP-ribose deacetylase	NA	Q71G61	Red_sea_bream_iridovirus	40.2	5.9e-26
AWX20566.1|1873955_1875377_+	phospholipase D family protein	NA	NA	NA	NA	NA
AWX17912.1|1875384_1876542_-	glucan biosynthesis protein C	NA	NA	NA	NA	NA
AWX17913.1|1876586_1876730_-	hypothetical protein	NA	NA	NA	NA	NA
AWX17914.1|1876733_1876865_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20567.1|1876936_1878472_+	glucan biosynthesis protein G	NA	NA	NA	NA	NA
AWX17915.1|1878464_1881008_+	glucan biosynthesis protein H	NA	NA	NA	NA	NA
AWX17916.1|1881238_1882567_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX17917.1|1882619_1882847_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
AWX17918.1|1882847_1883222_-	secY/secA suppressor protein	NA	NA	NA	NA	NA
AWX17919.1|1883304_1884354_-	multidrug transporter subunit MdtG	NA	NA	NA	NA	NA
AWX17920.1|1884681_1885257_-	resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	39.3	9.6e-22
AWX17921.1|1887117_1887873_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AWX17922.1|1887889_1889425_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.7	2.3e-102
AWX17923.1|1890312_1891586_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
>prophage 10
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2050877	2102400	4849628	transposase,tRNA,tail	Enterobacteria_phage(38.1%)	55	NA	NA
AWX18079.1|2050877_2052614_-|tRNA	arginine--tRNA ligase	tRNA	A0A1V0SIS8	Klosneuvirus	34.7	1.1e-84
AWX18080.1|2052829_2053396_+	VOC family protein	NA	NA	NA	NA	NA
AWX18081.1|2053409_2054156_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
AWX18082.1|2054543_2055644_+	cytochrome C	NA	NA	NA	NA	NA
AWX18083.1|2055668_2055773_+	transcriptional initiation protein Tat	NA	NA	NA	NA	NA
AWX18084.1|2055834_2056990_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-67
AWX20572.1|2056983_2059365_+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase	NA	NA	NA	NA	NA
AWX18085.1|2059529_2060501_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
AWX18086.1|2060497_2061241_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.0	2.7e-24
AWX18087.1|2061281_2061677_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18088.1|2061729_2062077_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
AWX18089.1|2062663_2063215_+	multiple promoter invertase	NA	G8I4U3	Mycobacterium_phage	40.9	8.6e-28
AWX18090.1|2063583_2064246_+	DNA methylase	NA	NA	NA	NA	NA
AWX18091.1|2064609_2064999_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AWX20573.1|2065151_2065499_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18092.1|2065498_2065789_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18093.1|2065785_2065971_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18094.1|2066109_2066400_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18095.1|2066399_2066819_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18096.1|2066986_2067310_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18097.1|2068402_2069558_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18098.1|2069555_2069729_-	DUF1737 domain-containing protein	NA	Q5MBW4	Stx1-converting_phage	95.3	2.1e-17
AWX18099.1|2069989_2070325_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	73.8	3.4e-43
AWX20574.1|2070772_2071099_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18100.1|2071591_2072446_-	antitermination protein	NA	K7P7B9	Enterobacteria_phage	59.0	9.7e-79
AWX18101.1|2072442_2072817_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	62.2	2.9e-35
AWX18102.1|2072816_2073059_-	hypothetical protein	NA	Q8W639	Enterobacteria_phage	95.0	3.5e-34
AWX18103.1|2073110_2073329_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18104.1|2073408_2074209_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX18105.1|2074205_2075378_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX20575.1|2075228_2076531_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX18106.1|2077831_2078785_+|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	36.7	2.0e-32
AWX18107.1|2078735_2079359_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	75.9	9.3e-79
AWX18108.1|2079358_2079538_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18109.1|2079538_2081290_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AWX18110.1|2081890_2082139_-	damage-inducible protein DinI	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
AWX20576.1|2082295_2082412_+	preprotein translocase subunit SecY	NA	NA	NA	NA	NA
AWX18111.1|2082493_2083060_-	hydrolase	NA	NA	NA	NA	NA
AWX18112.1|2083369_2085142_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
AWX18113.1|2085259_2085712_+	NUDIX pyrophosphatase	NA	NA	NA	NA	NA
AWX18114.1|2085740_2086481_+	transcriptional regulator	NA	NA	NA	NA	NA
AWX18115.1|2086515_2087037_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	34.2	1.0e-09
AWX18116.1|2087038_2087641_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20577.1|2087713_2087779_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18117.1|2087917_2088529_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AWX18118.1|2088537_2089548_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	24.9	1.6e-08
AWX18119.1|2089694_2090480_-	zinc ABC transporter permease	NA	NA	NA	NA	NA
AWX18120.1|2090476_2091232_-	Mn2+/Zn2+ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.3	1.3e-18
AWX20578.1|2091310_2092243_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWX18121.1|2092258_2093581_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	6.9e-15
AWX18122.1|2093700_2094672_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
AWX18123.1|2094891_2096187_-	alpha-mannosidase	NA	NA	NA	NA	NA
AWX18124.1|2096958_2097252_-	alpha-mannosidase	NA	NA	NA	NA	NA
AWX18125.1|2098654_2100523_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AWX18126.1|2101227_2102400_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
>prophage 11
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2120945	2146263	4849628	integrase,transposase,protease,tail	uncultured_Caudovirales_phage(22.22%)	18	2115501:2115515	2128651:2128665
2115501:2115515	attL	GGCGCTGGCAGAAGA	NA	NA	NA	NA
AWX18145.1|2120945_2122022_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.0	1.2e-97
AWX18146.1|2122314_2123588_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX20579.1|2124120_2124381_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	50.9	5.9e-11
AWX18147.1|2125675_2126431_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AWX18148.1|2126447_2127983_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.7	1.7e-102
AWX18149.1|2128165_2128327_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18150.1|2128442_2130149_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
2128651:2128665	attR	TCTTCTGCCAGCGCC	NA	NA	NA	NA
AWX18151.1|2130359_2131516_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18152.1|2133468_2134624_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-67
AWX18153.1|2134636_2134867_+	serine/threonine phosphatase	NA	S4TNS0	Salmonella_phage	53.7	2.9e-14
AWX20580.1|2134867_2135059_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AWX20581.1|2136294_2137734_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
AWX18154.1|2137814_2140448_-	MCE family protein	NA	NA	NA	NA	NA
AWX18155.1|2140416_2141700_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AWX18156.1|2141829_2142327_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
AWX18157.1|2142423_2143122_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AWX18158.1|2143141_2145190_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.8e-86
AWX18159.1|2145381_2146263_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 12
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2333868	2402871	4849628	transposase,protease	Escherichia_phage(43.75%)	71	NA	NA
AWX18337.1|2333868_2335197_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX18338.1|2335264_2335402_-	glutathione S-transferase	NA	NA	NA	NA	NA
AWX18339.1|2335506_2337009_-	dipeptide and tripeptide permease A	NA	NA	NA	NA	NA
AWX18340.1|2337619_2338255_-	endonuclease III	NA	NA	NA	NA	NA
AWX18341.1|2338254_2338950_-	electron transporter RsxE	NA	NA	NA	NA	NA
AWX18342.1|2338953_2339574_-	electron transport complex subunit G	NA	NA	NA	NA	NA
AWX18343.1|2339577_2340636_-	electron transport complex subunit D	NA	NA	NA	NA	NA
AWX18344.1|2340636_2342859_-	electron transporter RsxC	NA	NA	NA	NA	NA
AWX18345.1|2342851_2343430_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
AWX18346.1|2343429_2344011_-	electron transport complex subunit A	NA	NA	NA	NA	NA
AWX18347.1|2344087_2344528_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18348.1|2344613_2344829_-	nucleoid-associated protein	NA	NA	NA	NA	NA
AWX20591.1|2345093_2345219_-	division septum protein Blr	NA	NA	NA	NA	NA
AWX18349.1|2345462_2346503_+	oxidoreductase	NA	NA	NA	NA	NA
AWX18350.1|2346538_2347540_-	adenosine deaminase	NA	NA	NA	NA	NA
AWX18351.1|2347643_2348816_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AWX18352.1|2348825_2350418_-	PTS maltose- and glucose EIICB component	NA	NA	NA	NA	NA
AWX18353.1|2350592_2351621_+	Mal regulon transcriptional regulator MalI	NA	NA	NA	NA	NA
AWX18354.1|2351823_2352979_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	3.4e-66
AWX20592.1|2353076_2353844_+	7-alpha-hydroxysteroid dehydrogenase	NA	NA	NA	NA	NA
AWX18355.1|2354064_2354655_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AWX18356.1|2355043_2356855_+	beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	100.0	0.0e+00
AWX18357.1|2356851_2358225_+	MFS transporter	NA	NA	NA	NA	NA
AWX18358.1|2358263_2359574_+	glucuronide uptake porin UidC	NA	NA	NA	NA	NA
AWX18359.1|2359754_2361263_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18360.1|2361363_2362539_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AWX18361.1|2362737_2364384_+	fumarate hydratase	NA	NA	NA	NA	NA
AWX18362.1|2364526_2365930_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AWX18363.1|2365926_2366856_-	DNA replication terminus site-binding protein	NA	NA	NA	NA	NA
AWX18364.1|2366931_2368233_-	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	23.9	5.5e-17
AWX18365.1|2368236_2368956_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AWX18366.1|2369084_2369420_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18367.1|2369416_2370139_-	dihydrofolate reductase FolM	NA	NA	NA	NA	NA
AWX18368.1|2370175_2371558_-	arginine:ornithine antiporter	NA	NA	NA	NA	NA
AWX18369.1|2371554_2371671_-	amino acid ABC transporter	NA	NA	NA	NA	NA
AWX18370.1|2371743_2372688_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
AWX18371.1|2373211_2374744_+	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha	NA	NA	NA	NA	NA
AWX18372.1|2374754_2376143_+	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA	NA
AWX18373.1|2376167_2377202_-	AI-2 transporter TqsA	NA	NA	NA	NA	NA
AWX18374.1|2377336_2377507_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18375.1|2377613_2377979_+	multidrug transporter subunit MdtJ	NA	NA	NA	NA	NA
AWX18376.1|2377965_2378295_+	spermidine export protein MdtI	NA	NA	NA	NA	NA
AWX18377.1|2378333_2379155_-|protease	serine protease	protease	NA	NA	NA	NA
AWX18378.1|2379254_2379338_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18379.1|2379430_2379703_-	acid-shock protein	NA	NA	NA	NA	NA
AWX18380.1|2379926_2380958_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX18381.1|2381663_2382464_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	99.6	1.9e-145
AWX18382.1|2382460_2383633_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	1.4e-229
AWX18383.1|2384787_2386041_-	MFS transporter	NA	NA	NA	NA	NA
AWX18384.1|2386147_2387041_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWX18385.1|2387175_2388396_+	ROK family transcriptional regulator	NA	NA	NA	NA	NA
AWX18386.1|2388520_2389216_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AWX18387.1|2389168_2390461_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
AWX18388.1|2390619_2391234_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
AWX18389.1|2391276_2392131_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
AWX18390.1|2392132_2392750_-	dimethylsulfoxide reductase, chain B	NA	A0A077SL61	Escherichia_phage	59.1	8.0e-75
AWX18391.1|2395651_2395876_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18392.1|2395926_2396202_+|transposase	IS1 family transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
AWX18393.1|2396120_2396624_+|transposase	IS1 family transposase	transposase	U5P0U6	Shigella_phage	98.8	7.0e-93
AWX20593.1|2396771_2397137_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18394.1|2397148_2397301_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	55.3	1.7e-07
AWX18395.1|2397581_2397872_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
AWX18396.1|2397871_2398066_-	antitoxin	NA	NA	NA	NA	NA
AWX18397.1|2398085_2398586_-	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	34.9	1.5e-15
AWX18398.1|2398697_2398961_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWX18399.1|2398957_2399383_+	Rha family transcriptional regulator	NA	NA	NA	NA	NA
AWX18400.1|2399454_2400519_+	phage replisome organizer	NA	A0A088CD36	Shigella_phage	65.2	7.1e-63
AWX18401.1|2400525_2401272_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	82.1	4.0e-113
AWX18402.1|2401293_2402019_+	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	70.5	9.7e-88
AWX18403.1|2402034_2402457_+	DUF977 domain-containing protein	NA	A0A0U2QQN3	Escherichia_phage	93.5	2.1e-66
AWX18404.1|2402514_2402871_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	94.9	6.3e-56
>prophage 13
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2436628	2591484	4849628	transposase,protease	Escherichia_phage(16.67%)	110	NA	NA
AWX18428.1|2436628_2437660_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX18429.1|2437640_2437766_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AWX18430.1|2438061_2438328_+	transcriptional regulator	NA	NA	NA	NA	NA
AWX18431.1|2442621_2442732_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18432.1|2443288_2444089_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	99.6	1.9e-145
AWX18433.1|2444390_2444573_+	fimbrial protein FimG	NA	NA	NA	NA	NA
AWX18434.1|2445694_2447974_+	oxidoreductase	NA	NA	NA	NA	NA
AWX18435.1|2448134_2449407_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX18436.1|2449557_2449755_+	two-component-system connector protein SafA	NA	NA	NA	NA	NA
AWX18437.1|2449829_2450591_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AWX18438.1|2450991_2452674_+	sulfatase	NA	NA	NA	NA	NA
AWX18439.1|2452725_2453883_+	anaerobic sulfatase maturase	NA	NA	NA	NA	NA
AWX18440.1|2454185_2455871_+	multidrug ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.1	5.9e-11
AWX18441.1|2455908_2458281_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AWX18442.1|2458325_2461121_+	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	23.5	2.8e-18
AWX18443.1|2461482_2462883_+	glutamate decarboxylase beta	NA	NA	NA	NA	NA
AWX18444.1|2463038_2464574_+	glutamate:gamma-aminobutyrate antiporter	NA	NA	NA	NA	NA
AWX18445.1|2464704_2466024_+	glycoside hydrolase family 10 protein	NA	NA	NA	NA	NA
AWX18446.1|2466395_2467778_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	31.0	7.7e-17
AWX18447.1|2467778_2470202_+	oxygen-sensing cyclic-di-GMP phosphodiesterase	NA	A0A1V0SL97	Klosneuvirus	22.0	1.6e-09
AWX18448.1|2470460_2471042_+	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
AWX18449.1|2471055_2472606_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWX18450.1|2472607_2473630_+	ABC transporter permease	NA	NA	NA	NA	NA
AWX18451.1|2473626_2474523_+	D-ala-D-ala transporter subunit	NA	NA	NA	NA	NA
AWX18452.1|2474519_2475506_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	6.5e-18
AWX18453.1|2475534_2476431_+	peptide ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	4.5e-10
AWX18454.1|2476486_2476918_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AWX18455.1|2478053_2478254_+	biofilm-dependent modulation protein	NA	NA	NA	NA	NA
AWX18456.1|2478355_2478493_+	stationary-phase-induced ribosome-associated protein	NA	NA	NA	NA	NA
AWX18457.1|2478649_2480347_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
AWX18458.1|2481628_2481913_+	transcriptional regulator	NA	A0A2L1IV52	Escherichia_phage	51.1	1.2e-20
AWX18459.1|2482140_2482794_-	formate dehydrogenase nitrate-inducible cytochrome b556(Fdn) subunit	NA	NA	NA	NA	NA
AWX18460.1|2482786_2483671_-	formate dehydrogenase subunit beta	NA	NA	NA	NA	NA
AWX18461.1|2483683_2486731_-	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA	NA
AWX18462.1|2486962_2487844_+	EamA family transporter	NA	NA	NA	NA	NA
AWX18463.1|2488102_2489203_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	65.1	7.0e-138
AWX18464.1|2489963_2490536_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18465.1|2490619_2491651_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX18466.1|2492951_2494180_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
AWX18467.1|2494229_2495261_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX20597.1|2495408_2496653_+	nitrate/nitrite transporter NarU	NA	NA	NA	NA	NA
AWX18468.1|2496734_2500475_+	nitrate reductase subunit alpha	NA	NA	NA	NA	NA
AWX18469.1|2500471_2502016_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	39.2	6.4e-20
AWX18470.1|2502015_2502711_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
AWX18471.1|2502707_2503388_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
AWX18472.1|2503466_2504360_+	PhzF family protein	NA	NA	NA	NA	NA
AWX18473.1|2504455_2505301_-	N-hydroxyarylamine O-acetyltransferase	NA	NA	NA	NA	NA
AWX18474.1|2505473_2506043_+	flavin reductase family protein	NA	NA	NA	NA	NA
AWX18475.1|2506046_2506274_-	tautomerase PptA	NA	NA	NA	NA	NA
AWX18476.1|2507648_2508785_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
AWX18477.1|2510799_2511555_-	AAA family ATPase	NA	K4HZD4	Acidithiobacillus_phage	43.4	2.4e-44
AWX18478.1|2511571_2513107_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	40.7	1.7e-102
AWX18479.1|2514176_2514416_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18480.1|2514639_2515796_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.2e-66
AWX20598.1|2521627_2524738_-	RHS repeat protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	42.5	3.6e-22
AWX18481.1|2525690_2527799_-	type IV secretion protein Rhs	NA	A0A077K8Q4	Ralstonia_phage	25.4	8.1e-26
AWX18482.1|2528619_2528832_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18483.1|2528907_2529525_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
AWX18484.1|2529791_2531291_+	L-asparagine permease	NA	NA	NA	NA	NA
AWX18485.1|2531405_2532467_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18486.1|2532549_2532675_+	tonB-dependent receptor yncD	NA	NA	NA	NA	NA
AWX18487.1|2532614_2532794_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18488.1|2532708_2534811_+	TonB-dependent siderophore receptor	NA	A0A1B0VCF0	Salmonella_phage	65.6	1.1e-134
AWX18489.1|2535270_2536426_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18490.1|2536467_2536779_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AWX18491.1|2537753_2538791_-	NADP-dependent oxidoreductase	NA	A0A2L1IV26	Escherichia_phage	100.0	2.7e-06
AWX18492.1|2538971_2539490_+	N-acetyltransferase	NA	NA	NA	NA	NA
AWX18493.1|2539486_2539936_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18494.1|2539936_2540170_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20599.1|2540255_2540477_-	GhoT/OrtT family toxin	NA	NA	NA	NA	NA
AWX20600.1|2540411_2540627_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18495.1|2540623_2540719_+	stress response membrane protein YncL	NA	NA	NA	NA	NA
AWX18496.1|2541801_2543226_-	aminobutyraldehyde dehydrogenase	NA	NA	NA	NA	NA
AWX18497.1|2543247_2544042_-	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA	NA
AWX18498.1|2544932_2545946_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	37.9	2.1e-27
AWX18499.1|2545963_2547109_-	spermidine/putrescine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWX18500.1|2547353_2548760_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AWX20601.1|2548838_2549255_-	antitoxin HicB	NA	F1C593	Cronobacter_phage	57.8	6.3e-31
AWX18501.1|2549687_2550843_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.2e-66
AWX18502.1|2550943_2551174_+	DUF2554 domain-containing protein	NA	NA	NA	NA	NA
AWX18503.1|2551265_2553227_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	28.9	9.2e-24
AWX18504.1|2553299_2553836_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWX18505.1|2553834_2554863_+	benzoate transporter	NA	NA	NA	NA	NA
AWX18506.1|2556886_2557147_+	benzoate transporter	NA	NA	NA	NA	NA
AWX18507.1|2557186_2558395_-|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	92.3	9.5e-205
AWX18508.1|2560669_2561263_-	tellurite methyltransferase	NA	NA	NA	NA	NA
AWX18509.1|2561259_2562252_-	TDT family transporter	NA	NA	NA	NA	NA
AWX18510.1|2562375_2563356_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18511.1|2563350_2563887_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA	NA
AWX18512.1|2563949_2564174_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18513.1|2564189_2564393_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18514.1|2564313_2565969_-	glucan biosynthesis protein D	NA	NA	NA	NA	NA
AWX18515.1|2566193_2567537_-	DUF1338 domain-containing protein	NA	NA	NA	NA	NA
AWX20602.1|2567753_2568677_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWX18516.1|2568714_2570355_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
AWX18517.1|2570753_2570903_+	protein HokB	NA	NA	NA	NA	NA
AWX18518.1|2570974_2571148_-	hypothetical protein	NA	A0A0R6PKG1	Moraxella_phage	67.4	4.4e-07
AWX20603.1|2571671_2571815_+	ABC transporter	NA	NA	NA	NA	NA
AWX18519.1|2571853_2572834_-|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX18520.1|2573311_2574313_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AWX18521.1|2574354_2574987_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AWX18522.1|2575228_2575381_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AWX18523.1|2578678_2579359_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18524.1|2579630_2583533_-	ATP-dependent helicase	NA	A0A1V0SIV3	Klosneuvirus	29.5	2.2e-53
AWX18525.1|2583733_2584339_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
AWX20604.1|2584389_2585682_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18526.1|2585695_2587453_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18527.1|2588384_2589541_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18528.1|2589556_2590168_+	transcriptional regulator FeaR	NA	NA	NA	NA	NA
AWX18529.1|2590211_2591484_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 14
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2607665	2634352	4849628	transposase,lysis,tRNA,holin,tail	Enterobacteria_phage(33.33%)	27	NA	NA
AWX18544.1|2607665_2608352_-|tail	phage tail protein	tail	NA	NA	NA	NA
AWX18545.1|2610429_2611230_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX18546.1|2611226_2612399_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX18547.1|2612480_2612825_-	DNA packaging protein	NA	K7PH40	Enterobacteria_phage	100.0	2.1e-56
AWX18548.1|2612824_2613319_-	DUF1441 domain-containing protein	NA	A0A291AWV8	Escherichia_phage	100.0	9.9e-84
AWX18549.1|2613477_2613678_-	hypothetical protein	NA	K7PJR7	Enterobacteria_phage	90.9	2.5e-30
AWX18550.1|2613994_2614147_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	96.0	3.1e-20
AWX18551.1|2614134_2614602_-|lysis	lysis protein	lysis	Q9AZ06	Salmonella_phage	96.1	2.3e-74
AWX18552.1|2614598_2615096_-	lysozyme	NA	A0A0N7KZA0	Stx2-converting_phage	97.6	4.2e-90
AWX18553.1|2615095_2615311_-|holin	holin	holin	M1FN85	Enterobacteria_phage	95.8	1.0e-32
AWX18554.1|2615488_2616644_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18555.1|2617370_2617925_-	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	69.1	6.5e-68
AWX18556.1|2617921_2618212_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	89.6	1.5e-47
AWX18557.1|2618211_2618811_-	DUF1367 domain-containing protein	NA	A0A0U2RT94	Escherichia_phage	91.5	2.9e-106
AWX18558.1|2618882_2619152_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18559.1|2620117_2621273_+|transposase	transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.6e-68
AWX18560.1|2621859_2622795_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
AWX18561.1|2622923_2624297_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
AWX18562.1|2624326_2624500_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18563.1|2624774_2625758_-	zinc transporter ZntB	NA	NA	NA	NA	NA
AWX20605.1|2626012_2627245_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
AWX18564.1|2627265_2627829_-	DNA endonuclease SmrA	NA	NA	NA	NA	NA
AWX18565.1|2628158_2629067_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWX18566.1|2629242_2630553_+	amidohydrolase	NA	NA	NA	NA	NA
AWX18567.1|2630552_2631998_+	amidohydrolase	NA	NA	NA	NA	NA
AWX20606.1|2631910_2632105_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18568.1|2633196_2634352_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
>prophage 15
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2708607	2777101	4849628	transposase,protease,capsid,holin,tail	Escherichia_phage(32.61%)	66	NA	NA
AWX18631.1|2708607_2709657_-|protease	protease	protease	A0A2H4UUF9	Bodo_saltans_virus	31.5	1.3e-21
AWX18632.1|2709876_2710635_+	NAD(P)-dependent oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.9	2.6e-06
AWX18633.1|2710631_2711222_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
AWX18634.1|2711261_2712134_-	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA	NA
AWX18635.1|2713488_2714109_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AWX18636.1|2714105_2714987_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AWX18637.1|2715260_2716823_+	anthranilate synthase component I	NA	NA	NA	NA	NA
AWX18638.1|2716822_2718418_+	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.5	3.8e-52
AWX20607.1|2718421_2719780_+	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	NA	A0A0P0IR83	Acinetobacter_phage	40.7	8.6e-37
AWX18639.1|2719791_2720985_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
AWX18640.1|2720984_2721791_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
AWX18641.1|2722640_2722778_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18642.1|2722965_2723241_+	hypothetical protein	NA	S5MQL6	Escherichia_phage	52.9	1.1e-10
AWX18643.1|2723237_2723795_+	Rha family transcriptional regulator	NA	Q8H9L9	Vibrio_phage	63.8	4.2e-30
AWX20608.1|2724574_2725201_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AWX18644.1|2725145_2725283_-|capsid	nucleocapsid protein	capsid	NA	NA	NA	NA
AWX18645.1|2725399_2725582_-	DNA-invertase	NA	A0A0C4UR34	Shigella_phage	95.0	1.4e-24
AWX18646.1|2726424_2726571_+|tail	phage tail protein	tail	Q858V4	Yersinia_virus	91.7	3.8e-20
AWX18647.1|2726573_2727107_+|tail	tail fiber assembly protein	tail	C9DGR0	Escherichia_phage	85.9	3.4e-82
AWX18648.1|2727135_2727663_-|tail	tail fiber assembly protein	tail	A0A0C4UR05	Shigella_phage	84.0	7.1e-80
AWX18649.1|2727664_2727979_-|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	37.5	9.9e-13
AWX18650.1|2728017_2729173_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18651.1|2731839_2732439_-	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	94.4	1.7e-106
AWX18652.1|2735754_2735958_-	host specificity protein J	NA	H6WZM6	Escherichia_phage	98.5	3.4e-30
AWX18653.1|2736301_2736982_-|tail	tail assembly protein	tail	A0A0P0ZC16	Stx2-converting_phage	99.1	9.1e-112
AWX18654.1|2736879_2737623_-|tail	phage tail protein	tail	Q6H9T4	Enterobacteria_phage	98.4	7.7e-149
AWX18655.1|2737633_2738332_-|tail	phage minor tail protein L	tail	B6DZB1	Enterobacteria_phage	96.6	1.7e-129
AWX18656.1|2738331_2738661_-|tail	phage tail protein	tail	Q687F2	Enterobacteria_phage	100.0	4.3e-59
AWX18657.1|2738657_2741231_-|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	82.3	0.0e+00
AWX18658.1|2741211_2741625_-|tail	phage tail assembly protein T	tail	S5MDP5	Escherichia_phage	82.2	1.6e-42
AWX18659.1|2741651_2742083_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	68.8	3.7e-42
AWX18660.1|2742096_2742849_-|tail	phage tail protein	tail	Q687F6	Enterobacteria_phage	97.6	2.3e-132
AWX18661.1|2742856_2743252_-|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	82.4	1.5e-58
AWX18662.1|2743248_2743824_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	57.8	6.4e-50
AWX18663.1|2743838_2743949_-	hypothetical protein	NA	A0A2R9YJJ5	Escherichia_phage	87.5	6.9e-06
AWX18664.1|2744014_2745187_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX18665.1|2745626_2746782_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18666.1|2747216_2747531_-	hypothetical protein	NA	K7PGU6	Enterobacteria_phage	99.0	8.3e-52
AWX18667.1|2747535_2747751_-|holin	holin	holin	G9L6J5	Escherichia_phage	100.0	9.0e-34
AWX18668.1|2747901_2749755_-	9-O-acetyl-N-acetylneuraminic acid deacetylase	NA	Q08JA2	Stx2-converting_phage	90.2	0.0e+00
AWX18669.1|2750353_2751509_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18670.1|2753636_2754695_-	site-specific DNA-methyltransferase	NA	A0A0N7KZF8	Stx2-converting_phage	94.6	2.3e-199
AWX18671.1|2754845_2755043_-	TrmB family transcriptional regulator	NA	Q9MC00	Enterobacteria_phage	100.0	2.1e-29
AWX18672.1|2755267_2756089_-	antitermination protein	NA	K7P7B9	Enterobacteria_phage	59.7	1.4e-79
AWX18673.1|2756085_2756466_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	63.6	1.5e-34
AWX18674.1|2756466_2757525_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	47.4	1.3e-88
AWX20609.1|2757526_2757799_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18675.1|2758102_2758315_-	Hok/Gef family protein	NA	A0A0U2QV81	Escherichia_phage	96.9	8.9e-26
AWX18676.1|2758549_2758894_-	hypothetical protein	NA	A0A2R2Z2X8	Escherichia_phage	99.1	3.8e-58
AWX18677.1|2758890_2759058_-	hypothetical protein	NA	A0A192Y6F5	Salmonella_phage	89.4	2.1e-14
AWX18678.1|2759190_2760359_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AWX18679.1|2760562_2761719_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	4.7e-68
AWX18680.1|2761786_2762173_+	DUF977 domain-containing protein	NA	A0A0U2QQN3	Escherichia_phage	89.0	9.5e-58
AWX18681.1|2763056_2763269_+	hypothetical protein	NA	A0A2R2Z310	Escherichia_phage	90.0	4.4e-33
AWX18682.1|2763301_2763520_+	sugar acetyltransferase inhibitor	NA	A0A1I9LJM2	Stx_converting_phage	91.7	5.2e-29
AWX18683.1|2763940_2764579_-	outer membrane protein OmpW	NA	NA	NA	NA	NA
AWX18684.1|2764935_2765679_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18685.1|2765708_2766248_+	intracellular septation protein A	NA	NA	NA	NA	NA
AWX18686.1|2766352_2766751_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
AWX20610.1|2766790_2767510_-	TonB system transport protein TonB	NA	NA	NA	NA	NA
AWX18687.1|2767600_2769121_+	recombinase family protein	NA	NA	NA	NA	NA
AWX18688.1|2769583_2770856_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX18689.1|2771390_2772558_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
AWX18690.1|2773687_2774719_+|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX18691.1|2776158_2776368_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18692.1|2776390_2777101_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 16
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	2837310	2896148	4849628	integrase,transposase,tRNA	Shigella_phage(23.08%)	56	2849883:2849942	2901840:2902608
AWX18745.1|2837310_2837919_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AWX18746.1|2838035_2839127_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AWX18747.1|2839420_2839624_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18748.1|2840844_2842001_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX18749.1|2842604_2843015_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AWX18750.1|2843014_2843380_+	flagellar protein FliT	NA	NA	NA	NA	NA
AWX18751.1|2843457_2844945_+	alpha-amylase	NA	NA	NA	NA	NA
AWX18752.1|2844978_2845392_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18753.1|2845578_2846784_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18754.1|2846780_2847014_+	SirA-like protein	NA	NA	NA	NA	NA
AWX18755.1|2847120_2847792_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.9	4.8e-81
AWX18756.1|2847831_2849040_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	91.5	8.9e-211
2849883:2849942	attL	AGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT	NA	NA	NA	NA
AWX18757.1|2850752_2852025_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.1e-170
AWX18758.1|2852545_2853343_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AWX18759.1|2853352_2853904_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18760.1|2854072_2854405_-	multidrug SMR transporter	NA	NA	NA	NA	NA
AWX18761.1|2854504_2854819_+|integrase	integrase	integrase	A0A286S1S8	Klebsiella_phage	58.8	2.6e-05
AWX20614.1|2854738_2855053_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AWX18762.1|2855268_2856927_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
AWX18763.1|2856919_2857915_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AWX18764.1|2857907_2858594_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AWX18765.1|2858593_2859967_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
AWX18766.1|2859985_2860429_+	flagellar protein FliJ	NA	NA	NA	NA	NA
AWX18767.1|2860425_2861553_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AWX18768.1|2861657_2862122_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AWX18769.1|2862126_2863131_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AWX18770.1|2863127_2863541_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AWX18771.1|2863543_2863909_+	flagellar protein FliO	NA	NA	NA	NA	NA
AWX18772.1|2863908_2864646_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AWX18773.1|2864655_2864925_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AWX18774.1|2864933_2865719_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AWX18775.1|2866003_2866627_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AWX18776.1|2866670_2866913_-	DsrB protein	NA	NA	NA	NA	NA
AWX18777.1|2866845_2867034_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18778.1|2867021_2867249_+	hypothetical protein	NA	NA	NA	NA	NA
AWX18779.1|2867546_2868362_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
AWX18780.1|2868358_2870053_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	35.6	1.3e-18
AWX18781.1|2869973_2870162_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18782.1|2870223_2870406_-	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
AWX18783.1|2870484_2871402_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18784.1|2872484_2872955_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	47.6	4.4e-33
AWX18785.1|2872935_2874354_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	54.8	4.0e-101
AWX18786.1|2874420_2875077_-	phosphohydrolase	NA	NA	NA	NA	NA
AWX18787.1|2875116_2875482_-	permease	NA	NA	NA	NA	NA
AWX18788.1|2878579_2879431_+	Molecular chaperone Hsp31 and glyoxalase 3	NA	NA	NA	NA	NA
AWX18789.1|2879573_2880846_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	8.8e-177
AWX18790.1|2880874_2882233_-	two-component sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.5	8.7e-05
AWX18791.1|2882232_2882904_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.2	5.4e-32
AWX18792.1|2883036_2883450_+	5-hydroxyisourate hydrolase	NA	NA	NA	NA	NA
AWX18793.1|2883558_2884563_+	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA	NA
AWX18794.1|2884563_2885199_+	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
AWX18795.1|2885455_2886106_+	metal-binding protein ZinT	NA	NA	NA	NA	NA
AWX18796.1|2886448_2886871_+	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	100.0	8.0e-34
AWX18797.1|2887001_2887244_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20615.1|2887731_2888529_+	protein MtfA	NA	NA	NA	NA	NA
AWX18798.1|2894979_2896148_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
2901840:2902608	attR	ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGGCAATTGGTGAGCTAAGCGTTATATCGGGATGGAATAAGATGCGGGTTTTTATTATTTGTTATGCCGGGCATTAGACTTTAACAATAACGGGAAATCTGAACTGCCCGGAGTTTACCGTGAATTTCCAACAACTAAAGATAATCCGCGAGGCTGCACGTCAGGATTACAACCTGACAGAGGTTGCGAATATGCTTTTTACCTCACAGTCCGGCGTCAGCCGTCATATTCGGGAACTGGAGGATGAACTTGGCATCGAAATATTTGTTCGACGAGGTAAGCGACTGCTGGGCATGACTGAACCGGGCAAAGCATTACTGGTCATTGCAGAACGTATTCTGAATGAAGCCAGTAATGTTCGTCGGCTTGCAGACCTGTTTACCAACGATACGTCTGGCGTTCTCACTATTGCAACGACGCATACTCAGGCACGTTATAGCTTGCCAGAGGTCATTAAAGCTTTTCGCGAACTTTTCCCGGAGGTTCGGCTCGAGCTAATCCAGGGGACGCCACAGGAAATTGCGACGTTGTTGCAAAATGGCGAAGCTGATATTGGTATCGCCAGCGAGCGTTTGAGTAATGACCCGCAGCTCGTCGCCTTCCCGTGGTTTCGTTGGCACCATAGTTTGCTTGTTCCACTCGATCATCCCTTAACGCAAATTACACCATTGACGCTGGAATCAATAGCGAAGTGGCCGTTAATCACTTAC	NA	NA	NA	NA
>prophage 17
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	3023479	3050318	4849628	integrase,transposase,tRNA,tail	Enterobacteria_phage(53.85%)	24	3040796:3040816	3050356:3050376
AWX18906.1|3023479_3023983_-|transposase	IS1 family transposase	transposase	U5P0U6	Shigella_phage	99.4	4.8e-94
AWX18907.1|3023901_3024177_-|transposase	IS1 family transposase	transposase	Q71TE9	Escherichia_phage	98.9	2.0e-46
AWX18908.1|3024205_3024652_-	transporter	NA	NA	NA	NA	NA
AWX18909.1|3024667_3025342_-	fimbrial assembly protein	NA	NA	NA	NA	NA
AWX18910.1|3025421_3025964_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18911.1|3026205_3026487_-	DUF2574 domain-containing protein	NA	NA	NA	NA	NA
AWX18912.1|3026731_3027841_-	Fe-S-binding ATPase	NA	NA	NA	NA	NA
AWX18913.1|3027972_3030006_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.3	2.3e-54
AWX18914.1|3033851_3034988_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	8.5e-163
AWX18915.1|3034984_3036985_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	95.5	0.0e+00
AWX18916.1|3037106_3037568_+	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
AWX18917.1|3037608_3038079_-	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
AWX18918.1|3038125_3038845_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AWX20618.1|3038841_3040527_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.5	9.5e-304
3040796:3040816	attL	CCCTGTCACGTTACGCGCGTG	NA	NA	NA	NA
AWX18919.1|3041041_3041290_+	DNA damage-inducible protein DinI	NA	Q687E4	Enterobacteria_phage	97.6	9.1e-38
AWX18920.1|3042112_3042313_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18921.1|3042447_3043575_-|transposase	IS110 family transposase ISSso6	transposase	NA	NA	NA	NA
AWX18922.1|3043701_3043971_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	81.7	1.6e-19
AWX20619.1|3044069_3044696_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AWX18923.1|3045011_3046655_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
AWX18924.1|3046655_3046835_-	hypothetical protein	NA	NA	NA	NA	NA
AWX18925.1|3046834_3047458_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	75.9	1.2e-78
AWX18926.1|3047408_3048098_-|tail	phage tail protein	tail	A0A0U2SH60	Escherichia_phage	43.6	9.1e-19
AWX20620.1|3049445_3050318_+|integrase	site-specific integrase	integrase	H6WZF6	Escherichia_phage	97.6	1.3e-166
3050356:3050376	attR	CCCTGTCACGTTACGCGCGTG	NA	NA	NA	NA
>prophage 18
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	3256424	3352139	4849628	transposase,terminase,head,capsid,lysis,integrase,tRNA,holin,portal,tail	Enterobacteria_phage(57.14%)	94	3257253:3257312	3336708:3337478
AWX19098.1|3256424_3257261_-|transposase	ISNCY family transposase	transposase	Q2A0A7	Sodalis_phage	43.6	2.1e-62
3257253:3257312	attL	TGGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTT	NA	NA	NA	NA
AWX19099.1|3258288_3259062_-	histidine transport ATP-binding protein HisP	NA	G9BWD6	Planktothrix_phage	38.1	2.4e-23
AWX19100.1|3259069_3259786_-	histidine ABC transporter permease	NA	NA	NA	NA	NA
AWX19101.1|3259782_3260469_-	histidine ABC transporter permease	NA	NA	NA	NA	NA
AWX19102.1|3260558_3261341_-	histidine ABC transporter substrate-binding protein HisJ	NA	NA	NA	NA	NA
AWX19103.1|3261561_3262344_-	histidine ABC transporter substrate-binding protein HisJ	NA	NA	NA	NA	NA
AWX19104.1|3262609_3263179_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein	NA	NA	NA	NA	NA
AWX19105.1|3263273_3264791_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	44.0	5.9e-87
AWX19106.1|3264827_3265316_-	colicin V production protein	NA	NA	NA	NA	NA
AWX19107.1|3265574_3266237_-	protein DedD	NA	NA	NA	NA	NA
AWX19108.1|3266226_3267495_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AWX19109.1|3267564_3268479_-	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA	NA
AWX19110.1|3268634_3269294_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19111.1|3269376_3270189_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AWX19112.1|3270188_3271202_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AWX19113.1|3271267_3272404_-	erythronate-4-phosphate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	5.9e-23
AWX19114.1|3272502_3273498_+	flagella biosynthesis regulator	NA	NA	NA	NA	NA
AWX19115.1|3273494_3274673_-	arabinose transporter	NA	NA	NA	NA	NA
AWX19116.1|3274614_3274836_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19117.1|3274947_3276168_-	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA	NA
AWX19118.1|3276326_3278333_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
AWX19119.1|3278453_3278732_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19120.1|3278765_3279314_-	elongation factor P hydroxylase	NA	NA	NA	NA	NA
AWX19121.1|3279313_3280123_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19122.1|3280122_3280947_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
AWX19123.1|3280950_3282036_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	48.4	9.1e-90
AWX19124.1|3282070_3283003_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AWX19125.1|3283168_3283720_+	endonuclease SmrB	NA	NA	NA	NA	NA
AWX19126.1|3283841_3284699_-	DUF2544 domain-containing protein	NA	NA	NA	NA	NA
AWX19127.1|3284700_3285225_-	fimbrial protein	NA	NA	NA	NA	NA
AWX19128.1|3285221_3285692_-	fimbrial protein	NA	NA	NA	NA	NA
AWX19129.1|3285688_3286303_-	fimbrial protein	NA	NA	NA	NA	NA
AWX19130.1|3286982_3289625_-	outer membrane usher protein	NA	NA	NA	NA	NA
AWX19131.1|3289706_3290270_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
AWX19132.1|3290953_3291439_-	phosphohistidine phosphatase	NA	NA	NA	NA	NA
AWX19133.1|3291641_3293786_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
AWX19134.1|3293785_3295096_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
AWX19135.1|3295275_3295560_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19136.1|3295644_3295896_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19137.1|3295931_3297272_+	long-chain fatty acid transporter	NA	NA	NA	NA	NA
AWX19138.1|3297737_3298934_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWX19139.1|3301113_3301869_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
AWX19140.1|3301894_3302065_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19141.1|3302162_3303095_+	transporter	NA	E7DYY8	Enterobacteria_phage	100.0	1.2e-167
AWX19142.1|3303406_3304564_+|integrase	integrase	integrase	A5VW56	Enterobacteria_phage	99.2	1.8e-221
AWX19143.1|3307542_3308124_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	93.2	8.0e-101
AWX19144.1|3308123_3311207_-|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	82.1	7.3e-68
AWX19145.1|3311858_3315356_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	97.6	0.0e+00
AWX19146.1|3315416_3316088_-|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	97.8	2.2e-102
AWX19147.1|3315985_3316729_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	99.2	7.5e-152
AWX19148.1|3316734_3317433_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.3	8.1e-132
AWX19149.1|3317432_3317762_-|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	97.2	3.1e-57
AWX19150.1|3317758_3320320_-|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	89.1	0.0e+00
AWX19151.1|3320312_3320747_-|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	2.0e-64
AWX19152.1|3320728_3321151_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	96.4	3.1e-70
AWX20625.1|3321166_3321907_-|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	97.6	1.0e-129
AWX19153.1|3321914_3322310_-|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	99.2	6.5e-70
AWX19154.1|3322306_3322885_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	89.6	2.0e-80
AWX19155.1|3322896_3323250_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	99.1	4.4e-62
AWX20626.1|3323261_3323660_-	DNA-packaging protein FI	NA	A0A0K2FIR1	Enterobacteria_phage	83.3	1.2e-50
AWX19156.1|3323701_3324727_-|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	98.8	4.3e-190
AWX19157.1|3324782_3325115_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	99.1	3.8e-55
AWX19158.1|3325124_3326444_-|capsid	capsid assembly protein	capsid	A0A2I6TC87	Escherichia_phage	98.2	3.4e-232
AWX19159.1|3326424_3328026_-|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.2	2.2e-310
AWX19160.1|3328022_3328229_-|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
AWX19161.1|3328225_3330151_-|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	99.5	0.0e+00
AWX19162.1|3330125_3330671_-|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	98.3	2.3e-94
AWX19163.1|3331059_3331293_+	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	96.3	9.5e-21
AWX19164.1|3331350_3331761_+	hypothetical protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
AWX19165.1|3331940_3333214_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX20627.1|3333493_3333682_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19166.1|3333685_3333943_-	hypothetical protein	NA	A0A0P0ZBT1	Stx2-converting_phage	98.8	1.5e-38
AWX19167.1|3333939_3334437_-	DNA-binding protein	NA	A0A220NRM9	Escherichia_phage	100.0	1.1e-93
AWX19168.1|3334638_3335097_-|lysis	lysis protein	lysis	K7PJW6	Enterobacteria_phage	80.9	1.2e-56
AWX19169.1|3335093_3335591_-	lysozyme	NA	M1FJA0	Enterobacteria_phage	94.5	2.1e-86
AWX19170.1|3335590_3335806_-|holin	holin	holin	A5LH82	Enterobacteria_phage	100.0	2.6e-33
AWX19171.1|3337154_3338237_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	76.3	8.9e-154
3336708:3337478	attR	AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCCAATTTTTTACGTACGTAAACCACTAAATGATATTTGCGAGAATGCTACCGAGTATTGAAAACACCACTACAAATACATAAGCAAATCCCAACAAATAACCAACAAATAATTTCCAGTGTTATTTTTAGCCGGTTTAAATTGAACCTTCAAATTATAGAGCACTTATAAATAACAGCCGTTAATATAAATTGGCTAATAGATTTATTTTTATTCAGTCAAGAGCCATGAATAGGATTCGATAGAAAAAAGTTCAGATAAAAATAGAGATCTACTTCACAAATCAAACGAGAAACCAAAACTTACATCTTGAAATAATCACATTGATTAGATGAATATTTATCGCGCAATGACATCATTTTTTAATAATAGTTCAAAAAAAGGGCTCACGATGAAAAAATTAACAGTGGCAATTTCTGCTGTAGCTGCATCAGTACTGATGGCGATGTCTGCTCAGGCAGCTGAAATTTATAATAAAGACAGTAACAAGCTGGATCTGTACGGGAAAGTTAATGCTAAGCACTACTTCTCCTCTAATGATGCAGATGATGGTGATACTACTTATGCCCGTCTTGGCTTCAAAGGTGAAACCCAAATCAACGATCAACTGACTGGTTTCGGTCAGTGGGAATATGAATTCAAAGGCAACCGCGCTGAATCTCAAGGTTCCTCCAAAGATAAAACCCGTCTTGCCTTCGCTGGCCTGAAATTCGGT	NA	NA	NA	NA
AWX19172.1|3338425_3338809_-	antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
AWX19173.1|3338894_3339035_-	hypothetical protein	NA	K7PHH3	Enterobacteria_phage	67.4	5.5e-08
AWX19174.1|3339031_3339394_-	hypothetical protein	NA	K7PM48	Enterobacteria_phage	96.5	7.3e-60
AWX19175.1|3339390_3339681_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	95.8	3.0e-48
AWX19176.1|3339673_3339844_-	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	1.5e-12
AWX19177.1|3339843_3340299_-	hypothetical protein	NA	I6PD71	Cronobacter_phage	66.2	2.7e-59
AWX19178.1|3340563_3340941_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19179.1|3341804_3342977_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	99.7	6.3e-230
AWX19180.1|3342973_3343774_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX19181.1|3344507_3345755_+	MFS transporter	NA	NA	NA	NA	NA
AWX19182.1|3346351_3346552_-	transcriptional regulator	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
AWX19183.1|3346674_3347019_-	hypothetical protein	NA	K7PJY7	Enterobacterial_phage	98.2	1.0e-58
AWX19184.1|3347211_3347442_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19185.1|3347332_3347863_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20628.1|3348774_3349122_-	fructokinase	NA	NA	NA	NA	NA
AWX19186.1|3349078_3350247_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	99.7	5.8e-183
AWX19187.1|3350810_3352139_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	3529274	3583379	4849628	transposase,tRNA,tail	Bacillus_phage(14.29%)	48	NA	NA
AWX19334.1|3529274_3530012_-|tRNA	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
AWX19335.1|3530130_3530934_+	inositol monophosphatase	NA	NA	NA	NA	NA
AWX19336.1|3531078_3531933_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AWX19337.1|3532123_3533404_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
AWX19338.1|3533395_3534535_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
AWX19339.1|3534694_3535585_-	transcriptional regulator	NA	NA	NA	NA	NA
AWX19340.1|3535720_3537082_+	3-phenylpropionate/cinnamic acid dioxygenase subunit alpha	NA	NA	NA	NA	NA
AWX19341.1|3537078_3537597_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA	NA
AWX19342.1|3537596_3537917_+	3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit	NA	NA	NA	NA	NA
AWX19343.1|3537913_3538726_+	3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase	NA	NA	NA	NA	NA
AWX19344.1|3538735_3539938_+	3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD+ reductase component	NA	NA	NA	NA	NA
AWX19345.1|3540799_3541234_+	DoxX family protein	NA	NA	NA	NA	NA
AWX19346.1|3541281_3542154_-	aldose 1-epimerase	NA	NA	NA	NA	NA
AWX20634.1|3542165_3543227_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AWX19347.1|3543292_3544291_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AWX19348.1|3544315_3545827_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	3.3e-13
AWX19349.1|3545849_3546833_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWX19350.1|3551715_3552969_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	7.8e-101
AWX19351.1|3553296_3554487_+	flavohemoprotein	NA	NA	NA	NA	NA
AWX19352.1|3554531_3554870_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
AWX19353.1|3554930_3556265_-	transcriptional regulator	NA	W8CYM9	Bacillus_phage	37.3	3.9e-10
AWX19354.1|3556254_3556968_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
AWX19355.1|3557132_3558560_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.9	2.3e-16
AWX19356.1|3559117_3563005_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	58.9	1.3e-130
AWX19357.1|3563262_3564819_+	lytic transglycosylase F	NA	NA	NA	NA	NA
AWX19358.1|3564815_3565352_-|tRNA	tRNA-specific adenosine deaminase	tRNA	NA	NA	NA	NA
AWX19359.1|3565376_3566012_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
AWX19360.1|3566220_3567069_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AWX19361.1|3567173_3567356_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19362.1|3567566_3567965_-	DNA invertase	NA	A0A1S6L009	Salmonella_phage	95.4	8.3e-65
AWX19363.1|3568455_3570282_+	invasion protein	NA	NA	NA	NA	NA
AWX19364.1|3570282_3570462_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19365.1|3570461_3571085_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	75.9	1.2e-78
AWX19366.1|3571035_3572202_-|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	38.7	1.4e-56
AWX19367.1|3572645_3573919_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX19368.1|3574105_3574453_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	98.3	5.3e-60
AWX19369.1|3574691_3575848_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX19370.1|3575899_3576118_-	hypothetical protein	NA	B6DZU5	Stx2-converting_phage	100.0	2.4e-34
AWX19371.1|3576444_3577572_-|transposase	IS110 family transposase ISSso6	transposase	NA	NA	NA	NA
AWX19372.1|3577946_3579160_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.3	1.9e-168
AWX19373.1|3579257_3579518_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19374.1|3579514_3580105_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19375.1|3580124_3580472_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20635.1|3580404_3580623_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19376.1|3580600_3580936_+	colicin transporter	NA	NA	NA	NA	NA
AWX19377.1|3580953_3581163_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19378.1|3581166_3581349_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19379.1|3582106_3583379_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 20
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	3591167	3705016	4849628	transposase,protease,plate,head,terminase,lysis,tRNA,holin,portal,tail	Enterobacteria_phage(55.56%)	121	NA	NA
AWX19384.1|3591167_3592706_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	94.3	1.0e-283
AWX19385.1|3592755_3593103_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	98.3	5.3e-60
AWX20636.1|3593099_3593480_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	99.2	4.2e-66
AWX19386.1|3594607_3595735_-|transposase	IS110 family transposase ISSso6	transposase	NA	NA	NA	NA
AWX19387.1|3595865_3597021_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX19388.1|3597388_3597601_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19389.1|3597730_3598291_-	conjugal transfer protein	NA	NA	NA	NA	NA
AWX19390.1|3599112_3600417_-	DNA helicase	NA	NA	NA	NA	NA
AWX19391.1|3600413_3600800_-	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA	NA
AWX19392.1|3600796_3602068_-	cell division protein FtsK	NA	NA	NA	NA	NA
AWX19393.1|3602036_3602231_-	conjugal transfer protein TraE	NA	NA	NA	NA	NA
AWX19394.1|3602252_3602564_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
AWX19395.1|3602974_3604188_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	99.3	1.4e-168
AWX19396.1|3604568_3605369_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX19397.1|3605365_3606538_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX19398.1|3606978_3608166_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
AWX19399.1|3608338_3609541_-	recombinase	NA	NA	NA	NA	NA
AWX19400.1|3609755_3610016_+	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
AWX19401.1|3610209_3610290_-	small toxic protein ShoB	NA	NA	NA	NA	NA
AWX19402.1|3610511_3610892_-	holo-ACP synthase	NA	NA	NA	NA	NA
AWX19403.1|3610891_3611623_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AWX19404.1|3611634_3612363_-	DNA repair protein RecO	NA	NA	NA	NA	NA
AWX19405.1|3612374_3613280_-	GTPase Era	NA	NA	NA	NA	NA
AWX19406.1|3613276_3613957_-	ribonuclease 3	NA	A0A2P0VNZ5	Tetraselmis_virus	39.6	5.6e-21
AWX19407.1|3613900_3614179_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19408.1|3614229_3615204_-	S26 family signal peptidase	NA	NA	NA	NA	NA
AWX19409.1|3615219_3617019_-	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	41.9	4.2e-23
AWX19410.1|3617216_3617696_-	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
AWX19411.1|3617692_3618649_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
AWX19412.1|3618648_3619299_-	anti-sigma factor	NA	NA	NA	NA	NA
AWX19413.1|3619331_3619907_-	ECF RNA polymerase sigma-E factor	NA	NA	NA	NA	NA
AWX19414.1|3620314_3621022_+	FAD-binding protein	NA	NA	NA	NA	NA
AWX19415.1|3621078_3622234_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX19416.1|3622262_3623204_+	L-aspartate oxidase	NA	NA	NA	NA	NA
AWX20637.1|3623188_3623926_-|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
AWX19417.1|3624057_3625392_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
AWX19418.1|3625600_3626482_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWX19419.1|3626584_3627172_+	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
AWX19420.1|3627227_3627611_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
AWX19421.1|3627915_3628605_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	7.1e-56
AWX19422.1|3628652_3629690_-	methyltransferase	NA	NA	NA	NA	NA
AWX19423.1|3629679_3629883_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19424.1|3629896_3630316_+	thiol disulfide reductase thioredoxin	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
AWX19425.1|3630384_3631083_+	DTW domain-containing protein	NA	NA	NA	NA	NA
AWX19426.1|3631114_3633775_+	protein acetyltransferase	NA	NA	NA	NA	NA
AWX19427.1|3633888_3635244_+	phosphatidylserine synthase	NA	NA	NA	NA	NA
AWX19428.1|3635289_3635613_+	lipoprotein	NA	NA	NA	NA	NA
AWX19429.1|3635609_3636908_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.2	3.7e-45
AWX19430.1|3636889_3637003_-	alpha-ketoglutarate permease	NA	NA	NA	NA	NA
AWX19431.1|3642685_3645259_-	chaperone protein ClpB	NA	H6X3M6	Enterobacteria_phage	35.3	2.6e-127
AWX19432.1|3645388_3646120_-	laccase domain-containing protein	NA	NA	NA	NA	NA
AWX19433.1|3646116_3647097_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
AWX19434.1|3647231_3647969_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AWX19435.1|3648090_3649419_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX19436.1|3649522_3649885_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	100.0	1.1e-63
AWX19437.1|3649946_3651102_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX19438.1|3651165_3652662_+|tail	phage tail protein	tail	Q8W623	Enterobacteria_phage	97.2	6.5e-272
AWX19439.1|3652661_3653018_+|tail	phage tail protein	tail	Q8W622	Enterobacteria_phage	98.3	5.3e-63
AWX20638.1|3653023_3653353_+|tail	phage tail assembly protein	tail	Q8W621	Enterobacteria_phage	98.2	8.7e-52
AWX19440.1|3653437_3655387_+|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	97.8	0.0e+00
AWX19441.1|3655589_3656570_+|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX19442.1|3656608_3656719_-	ABC transporter	NA	NA	NA	NA	NA
AWX19443.1|3656731_3658123_+	DNA circularization protein	NA	Q8W619	Enterobacteria_phage	95.7	1.4e-247
AWX19444.1|3658119_3659220_+|plate	baseplate protein	plate	Q8W618	Enterobacteria_phage	94.9	5.1e-189
AWX19445.1|3659197_3659731_+|plate	phage baseplate assembly protein V	plate	Q8W617	Enterobacteria_phage	96.0	3.7e-92
AWX19446.1|3659736_3660147_+	hypothetical protein	NA	Q8W616	Enterobacteria_phage	95.6	3.0e-70
AWX19447.1|3661495_3661999_+|tail	phage tail protein	tail	Q8W615	Enterobacteria_phage	95.8	3.7e-86
AWX19448.1|3661998_3662589_+	DUF2313 domain-containing protein	NA	Q8W614	Enterobacteria_phage	98.0	1.4e-113
AWX19449.1|3662575_3663616_+|tail	phage tail protein	tail	Q8W613	Enterobacteria_phage	83.5	1.5e-158
AWX19450.1|3663675_3664164_+|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	77.9	6.0e-65
AWX19451.1|3664187_3665456_+|tail	phage tail protein	tail	Q8W611	Enterobacteria_phage	43.5	1.2e-77
AWX19452.1|3665406_3666030_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.4	1.3e-80
AWX19453.1|3666805_3667288_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
AWX19454.1|3667419_3667896_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AWX19455.1|3667885_3668176_+	RnfH family protein	NA	NA	NA	NA	NA
AWX19456.1|3668287_3669616_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX19457.1|3669635_3669842_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19458.1|3669876_3670218_+	ribosome-associated inhibitor A	NA	NA	NA	NA	NA
AWX19459.1|3670468_3671629_+	P-protein	NA	NA	NA	NA	NA
AWX19460.1|3671671_3672793_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
AWX19461.1|3672803_3673874_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	4.0e-90
AWX19462.1|3674082_3674448_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19463.1|3674597_3675116_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19464.1|3675215_3676372_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX19465.1|3676423_3676627_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19466.1|3676693_3676834_+	diguanylate cyclase	NA	NA	NA	NA	NA
AWX19467.1|3676907_3678080_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX19468.1|3678076_3678877_+	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX19469.1|3678938_3679988_+	diguanylate cyclase	NA	NA	NA	NA	NA
AWX19470.1|3680003_3680486_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19471.1|3680562_3680910_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AWX19472.1|3680951_3681719_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AWX19473.1|3681749_3682298_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AWX19474.1|3682316_3682565_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AWX19475.1|3682813_3684175_-	signal recognition particle protein	NA	NA	NA	NA	NA
AWX20639.1|3684341_3685133_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
AWX20640.1|3685198_3686440_+	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
AWX19476.1|3686494_3687088_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
AWX19477.1|3687084_3687279_-	molecular chaperone GrpE	NA	NA	NA	NA	NA
AWX19478.1|3687210_3688089_+	NAD(+) kinase	NA	NA	NA	NA	NA
AWX19479.1|3688174_3689836_+	DNA repair protein RecN	NA	NA	NA	NA	NA
AWX19480.1|3689984_3690326_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
AWX19481.1|3690384_3691713_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX19482.1|3691780_3692812_-|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	97.6	1.1e-193
AWX19483.1|3692936_3693119_-	hypothetical protein	NA	Q8W630	Enterobacteria_phage	98.3	2.9e-25
AWX19484.1|3693130_3694864_-|terminase	terminase	terminase	U5P0Q5	Shigella_phage	99.5	0.0e+00
AWX19485.1|3694860_3695364_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B2F4	Salmonella_phage	99.4	6.7e-88
AWX19486.1|3695476_3695827_-	HNH endonuclease	NA	Q8W633	Enterobacteria_phage	99.1	4.7e-64
AWX19487.1|3695869_3696334_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	90.8	1.2e-67
AWX19488.1|3696330_3696828_-	lysozyme	NA	A5LH83	Enterobacteria_phage	98.2	2.4e-90
AWX19489.1|3696827_3697043_-|holin	holin	holin	M1FN85	Enterobacteria_phage	91.5	4.2e-31
AWX19490.1|3697249_3697546_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19491.1|3698223_3698787_-	hypothetical protein	NA	Q8HA19	Enterobacteria_phage	56.9	2.6e-40
AWX19492.1|3699038_3699263_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19493.1|3699267_3699654_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	83.9	1.1e-58
AWX19494.1|3699643_3700015_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	64.0	8.0e-38
AWX19495.1|3700014_3700257_-	hypothetical protein	NA	Q8W639	Enterobacteria_phage	95.0	3.9e-33
AWX19496.1|3700268_3701660_-	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	96.5	5.9e-259
AWX19497.1|3701775_3703049_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.3	6.6e-172
AWX20641.1|3703079_3704459_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AWX19498.1|3704797_3705016_-	DNA invertase	NA	A0A1S6L009	Salmonella_phage	70.0	4.6e-09
>prophage 21
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	3782609	3796569	4849628		Escherichia_phage(40.0%)	12	NA	NA
AWX19567.1|3782609_3785171_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
AWX19568.1|3785459_3785699_+	serine/threonine phosphatase	NA	S4TT53	Salmonella_phage	40.0	1.1e-08
AWX19569.1|3786760_3787528_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
AWX19570.1|3787723_3788632_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	8.6e-118
AWX19571.1|3788628_3789891_+	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	61.2	1.4e-134
AWX19572.1|3789887_3790526_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AWX19573.1|3790530_3791307_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19574.1|3791395_3792760_+	GntP family transporter	NA	NA	NA	NA	NA
AWX19575.1|3792853_3793846_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
AWX19576.1|3793908_3795048_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
AWX19577.1|3795187_3795814_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.1	2.2e-35
AWX19578.1|3795807_3796569_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
>prophage 22
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	4101458	4143281	4849628	transposase,tRNA	Shigella_phage(12.5%)	38	NA	NA
AWX19841.1|4101458_4102490_-|transposase	IS630 family transposase IS630	transposase	NA	NA	NA	NA
AWX19842.1|4102608_4103836_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.3e-177
AWX19843.1|4105356_4106106_+	fimbrial assembly protein	NA	NA	NA	NA	NA
AWX19844.1|4106107_4106857_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19845.1|4106867_4108196_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX19846.1|4108630_4109662_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWX19847.1|4109808_4110009_-	glycogen synthase	NA	NA	NA	NA	NA
AWX19848.1|4110277_4110907_+	DUF1449 domain-containing protein	NA	NA	NA	NA	NA
AWX19849.1|4110933_4112595_+	flotillin	NA	NA	NA	NA	NA
AWX19850.1|4112929_4113322_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19851.1|4113388_4114822_-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	29.4	3.0e-40
AWX19852.1|4114869_4117710_-	glutamine-synthetase adenylyltransferase	NA	NA	NA	NA	NA
AWX19853.1|4117732_4119034_-	inorganic triphosphatase	NA	NA	NA	NA	NA
AWX20653.1|4119050_4119236_-	hypothetical protein	NA	NA	NA	NA	NA
AWX19854.1|4119275_4119896_+	signal transduction protein	NA	NA	NA	NA	NA
AWX19855.1|4119959_4121198_+|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	51.0	6.5e-92
AWX19856.1|4121360_4122182_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AWX19857.1|4122272_4122641_-	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
AWX19858.1|4122745_4123363_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AWX19859.1|4124514_4125426_+	L+-tartrate dehydratase subunit alpha	NA	NA	NA	NA	NA
AWX19860.1|4125422_4126028_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA	NA
AWX19861.1|4126076_4127540_+	anion permease	NA	NA	NA	NA	NA
AWX19862.1|4127582_4128596_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.2	4.8e-109
AWX19863.1|4128832_4129048_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AWX19864.1|4129158_4130904_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	1.1e-76
AWX19865.1|4130917_4131040_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AWX19866.1|4131098_4132940_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.3e-35
AWX19867.1|4133024_4134353_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX19868.1|4134457_4134964_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
AWX19869.1|4135217_4135982_-	siderophore-interacting protein	NA	NA	NA	NA	NA
AWX19870.1|4136269_4136893_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AWX19871.1|4136999_4138520_-	hypothetical protein	NA	A0A1B0V854	Salmonella_phage	52.2	1.4e-35
AWX19872.1|4138795_4139002_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19873.1|4138937_4140317_+	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.4	2.9e-32
AWX19874.1|4140358_4140691_-|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
AWX19875.1|4140797_4140980_+	hypothetical protein	NA	NA	NA	NA	NA
AWX19876.1|4140909_4141893_+	transcriptional regulator EbgR	NA	NA	NA	NA	NA
AWX19877.1|4141952_4143281_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	4518953	4527643	4849628	transposase	uncultured_Caudovirales_phage(42.86%)	8	NA	NA
AWX20211.1|4518953_4520227_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
AWX20212.1|4520417_4521574_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	2.3e-67
AWX20213.1|4522637_4523438_-	AAA family ATPase	NA	U5N3V8	Enterobacteria_phage	100.0	6.6e-146
AWX20214.1|4523434_4524607_-|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
AWX20215.1|4525078_4525375_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AWX20216.1|4525508_4525934_-	arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.5e-51
AWX20217.1|4525946_4527236_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	73.5	4.6e-173
AWX20218.1|4527289_4527643_-	transcriptional regulator	NA	A0A2H4J145	uncultured_Caudovirales_phage	50.9	9.7e-25
>prophage 24
CP022672	Shigella sonnei strain 866 chromosome, complete genome	4849628	4646184	4687988	4849628	transposase,protease	Escherichia_phage(40.0%)	40	NA	NA
AWX20324.1|4646184_4647393_+|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	92.5	4.6e-207
AWX20325.1|4647641_4648091_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20326.1|4648199_4648547_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20327.1|4648536_4648899_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20328.1|4648895_4649393_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20329.1|4649400_4650585_-	multidrug transporter EmrD	NA	S4TR35	Salmonella_phage	23.5	6.8e-14
AWX20330.1|4650864_4650954_-	type I toxin-antitoxin system toxin TisB	NA	NA	NA	NA	NA
AWX20331.1|4650950_4651064_-	LexA family transcriptional regulator	NA	NA	NA	NA	NA
AWX20332.1|4651086_4651245_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20333.1|4651241_4651532_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20334.1|4651518_4651617_+	ilvB operon leader peptide IvbL	NA	NA	NA	NA	NA
AWX20335.1|4651722_4653411_+	acetolactate synthase, large subunit, biosynthetic type	NA	E5EQ70	Micromonas_sp._RCC1109_virus	29.4	4.6e-56
AWX20336.1|4653414_4653705_+	acetolactate synthase isozyme 1 small subunit	NA	NA	NA	NA	NA
AWX20337.1|4653779_4654370_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AWX20338.1|4654369_4655872_+	two-component system sensor histidine kinase UhpB	NA	NA	NA	NA	NA
AWX20339.1|4655881_4657201_+	MFS transporter family glucose-6-phosphate receptor UhpC	NA	NA	NA	NA	NA
AWX20340.1|4657338_4658730_+	hexose phosphate transporter	NA	NA	NA	NA	NA
AWX20341.1|4658774_4660541_-	adenine deaminase	NA	NA	NA	NA	NA
AWX20342.1|4660637_4660826_+	sulfate permease	NA	NA	NA	NA	NA
AWX20343.1|4662502_4662955_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20344.1|4662975_4663167_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20345.1|4664386_4664680_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20677.1|4664716_4664905_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20346.1|4664901_4665669_+	lipoprotein NlpA	NA	NA	NA	NA	NA
AWX20347.1|4666431_4666638_-|transposase	IS3 family transposase	transposase	H6WZH1	Escherichia_phage	91.2	9.3e-28
AWX20348.1|4666653_4667052_-	hypothetical protein	NA	A0A0N7C1X7	Escherichia_phage	97.6	9.1e-64
AWX20349.1|4667137_4667413_-	hypothetical protein	NA	A0A0N7C1Z2	Escherichia_phage	94.5	3.6e-43
AWX20678.1|4667823_4668273_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	59.7	1.0e-47
AWX20350.1|4668777_4669068_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20351.1|4670588_4670786_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20352.1|4670771_4673051_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AWX20353.1|4672972_4674310_-	lysine 6-monooxygenase	NA	NA	NA	NA	NA
AWX20354.1|4674306_4676049_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AWX20355.1|4676048_4676996_-	N-acetyltransferase	NA	NA	NA	NA	NA
AWX20679.1|4676996_4678784_-	aerobactin synthase IucA	NA	NA	NA	NA	NA
AWX20356.1|4678856_4680050_+	MFS transporter	NA	NA	NA	NA	NA
AWX20357.1|4679999_4680926_-	shiE	NA	NA	NA	NA	NA
AWX20358.1|4682441_4683598_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.0e-67
AWX20359.1|4683649_4684252_-|protease	serine protease	protease	Q9LA58	Enterobacterial_phage	49.3	1.4e-39
AWX20360.1|4686815_4687988_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	100.0	2.2e-230
>prophage 1
CP022673	Shigella sonnei strain 866 plasmid p866, complete sequence	113079	46936	70542	113079	transposase	Escherichia_phage(50.0%)	22	NA	NA
AWX20733.1|46936_48049_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
AWX20734.1|48671_48923_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20735.1|49987_51259_+	conjugal transfer protein TrbA	NA	NA	NA	NA	NA
AWX20736.1|51255_52380_+	protein-disulfide isomerase	NA	NA	NA	NA	NA
AWX20737.1|52360_54664_+	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
AWX20738.1|54777_55071_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20739.1|55142_55340_+	hypothetical protein	NA	NA	NA	NA	NA
AWX20740.1|55527_56343_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
AWX20741.1|56429_56732_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AWX20742.1|56625_56877_-	hypothetical protein	NA	NA	NA	NA	NA
AWX20743.1|58083_59064_-|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX20744.1|59165_61139_+|transposase	transposase	transposase	NA	NA	NA	NA
AWX20745.1|61558_62539_+|transposase	IS5/IS1182 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	3.0e-185
AWX20807.1|62577_62709_-	ABC transporter	NA	NA	NA	NA	NA
AWX20746.1|63660_64077_-|transposase	transposase	transposase	NA	NA	NA	NA
AWX20747.1|64089_64758_+	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA	NA
AWX20748.1|64870_66076_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA	NA
AWX20749.1|66154_66781_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
AWX20750.1|66758_67445_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AWX20751.1|67452_67839_-	amino acid-binding protein	NA	NA	NA	NA	NA
AWX20752.1|67831_68152_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AWX20808.1|69029_70542_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.7	6.2e-12
