assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003253795.1_ASM325379v1	CP021971	Hafnia alvei strain CBA7135 chromosome, complete genome	1	775639-775764	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,RT,DinG,csa3	Orphan	CTAATGGGAGGTTAACCCCTCCACACCTCCCCTTCGCAGGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,RT,DinG,csa3	NA,NA	NA|825aa|up_9|CP021971.1_761176_763651_+	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA|1325aa|up_8|CP021971.1_763688_767663_+	pfam05420, BCSC_C, Cellulose synthase operon protein C C-terminus (BCSC_C)	NA|185aa|up_7|CP021971.1_767595_768150_+	pfam03500, Cellsynth_D, Cellulose synthase subunit D	NA|339aa|up_6|CP021971.1_768149_769166_+	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8	NA|74aa|up_5|CP021971.1_769440_769662_+	COG5633, COG5633, Predicted periplasmic lipoprotein [General function prediction only]	NA|64aa|up_4|CP021971.1_769737_769929_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|307aa|up_3|CP021971.1_770024_770945_-	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|421aa|up_2|CP021971.1_771117_772380_+	PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional	NA|716aa|up_1|CP021971.1_772608_774756_+	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA	NA|155aa|up_0|CP021971.1_775066_775531_+	pfam11046, HycA_repressor, Transcriptional repressor of hyc and hyp operons	NA|343aa|down_0|CP021971.1_775856_776885_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|372aa|down_1|CP021971.1_776900_778016_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|99aa|down_2|CP021971.1_778029_778326_-	PRK10413, PRK10413, hydrogenase maturation factor HybG	NA|376aa|down_3|CP021971.1_778316_779444_-	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional	NA|142aa|down_4|CP021971.1_779461_779887_-	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein	NA|767aa|down_5|CP021971.1_779912_782213_-	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|743aa|down_6|CP021971.1_782378_784607_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|182aa|down_7|CP021971.1_784747_785293_-	PRK10330, PRK10330, electron transport protein HydN	NA|715aa|down_8|CP021971.1_785738_787883_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|176aa|down_9|CP021971.1_788207_788735_-	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional
GCA_003253795.1_ASM325379v1	CP021971	Hafnia alvei strain CBA7135 chromosome, complete genome	2	1095447-1096017	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,WYL,DEDDh,RT,DinG,csa3	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,9,8	9	Orphan	cas3,WYL,DEDDh,RT,DinG,csa3	NA,NA	NA|515aa|up_9|CP021971.1_1085249_1086794_-	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|267aa|up_8|CP021971.1_1086796_1087597_-	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional	NA|258aa|up_7|CP021971.1_1087601_1088375_-	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional	NA|353aa|up_6|CP021971.1_1088384_1089443_-	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|170aa|up_5|CP021971.1_1089458_1089968_-	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit	NA|254aa|up_4|CP021971.1_1089995_1090757_-	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein	NA|96aa|up_3|CP021971.1_1090765_1091053_-	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional	NA|336aa|up_2|CP021971.1_1091067_1092075_-	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional	NA|691aa|up_1|CP021971.1_1092331_1094404_+	PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional	NA|265aa|up_0|CP021971.1_1094475_1095270_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|533aa|down_0|CP021971.1_1096025_1097624_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|557aa|down_1|CP021971.1_1097709_1099380_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|550aa|down_2|CP021971.1_1099479_1101129_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|485aa|down_3|CP021971.1_1101290_1102745_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|546aa|down_4|CP021971.1_1103026_1104664_+	PRK05380, pyrG, CTP synthetase; Validated	NA|435aa|down_5|CP021971.1_1104747_1106052_+	PRK00077, eno, enolase; Provisional	NA|76aa|down_6|CP021971.1_1106166_1106394_-	PRK11415, PRK11415, hypothetical protein; Provisional	NA|256aa|down_7|CP021971.1_1106749_1107517_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|255aa|down_8|CP021971.1_1107613_1108378_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|down_9|CP021971.1_1108364_1109087_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCA_003253795.1_ASM325379v1	CP021971	Hafnia alvei strain CBA7135 chromosome, complete genome	3	1109158-1109248	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,RT,DinG,csa3	Orphan	TGCTCCTCCCCTGCGAAGGGGGAGGCT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,RT,DinG,csa3	NA,NA|115aa|down_4|CP021971.1_1114838_1115183_-,NA|309aa|down_5|CP021971.1_1115248_1116175_-	NA|533aa|up_9|CP021971.1_1096025_1097624_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|557aa|up_8|CP021971.1_1097709_1099380_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|550aa|up_7|CP021971.1_1099479_1101129_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|485aa|up_6|CP021971.1_1101290_1102745_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|546aa|up_5|CP021971.1_1103026_1104664_+	PRK05380, pyrG, CTP synthetase; Validated	NA|435aa|up_4|CP021971.1_1104747_1106052_+	PRK00077, eno, enolase; Provisional	NA|76aa|up_3|CP021971.1_1106166_1106394_-	PRK11415, PRK11415, hypothetical protein; Provisional	NA|256aa|up_2|CP021971.1_1106749_1107517_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|255aa|up_1|CP021971.1_1107613_1108378_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|241aa|up_0|CP021971.1_1108364_1109087_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|478aa|down_0|CP021971.1_1109271_1110705_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|512aa|down_1|CP021971.1_1110806_1112342_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|563aa|down_2|CP021971.1_1112341_1114030_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|152aa|down_3|CP021971.1_1114372_1114828_-	cd11743, Cthe_2751_like, Uncharacterized protein domain similar to Clostridium thermocellum 2751	NA|115aa|down_4|CP021971.1_1114838_1115183_-	NA	NA|309aa|down_5|CP021971.1_1115248_1116175_-	NA	NA|285aa|down_6|CP021971.1_1116496_1117351_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|258aa|down_7|CP021971.1_1117425_1118199_-	PRK08017, PRK08017, SDR family oxidoreductase	NA|214aa|down_8|CP021971.1_1118253_1118895_-	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional	NA|229aa|down_9|CP021971.1_1118862_1119549_+	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional
GCA_003253795.1_ASM325379v1	CP021971	Hafnia alvei strain CBA7135 chromosome, complete genome	4	2752507-2753015	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,WYL,DEDDh,RT,DinG,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,7	8	Orphan	cas3,WYL,DEDDh,RT,DinG,csa3	NA,NA	NA|741aa|up_9|CP021971.1_2739067_2741290_+	PRK11465, PRK11465, putative mechanosensitive channel protein; Provisional	NA|316aa|up_8|CP021971.1_2741339_2742287_-	PRK11727, PRK11727, 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA|212aa|up_7|CP021971.1_2742527_2743163_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|525aa|up_6|CP021971.1_2743459_2745034_+	PRK10551, PRK10551, cyclic di-GMP phosphodiesterase	NA|609aa|up_5|CP021971.1_2745281_2747108_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|366aa|up_4|CP021971.1_2747119_2748217_+	PRK15133, PRK15133, microcin C ABC transporter permease YejB; Provisional	NA|341aa|up_3|CP021971.1_2748216_2749239_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|536aa|up_2|CP021971.1_2749240_2750848_+	PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional	NA|132aa|up_1|CP021971.1_2750928_2751324_-	PRK11835, PRK11835, hypothetical protein; Provisional	NA|151aa|up_0|CP021971.1_2751992_2752445_-	pfam12883, DUF3828, Protein of unknown function (DUF3828)	NA|404aa|down_0|CP021971.1_2753359_2754571_-	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter	NA|241aa|down_1|CP021971.1_2754680_2755403_-	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|80aa|down_2|CP021971.1_2755716_2755956_+	pfam10678, DUF2492, Protein of unknown function (DUF2492)	NA|587aa|down_3|CP021971.1_2755978_2757739_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|95aa|down_4|CP021971.1_2757885_2758170_+	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|336aa|down_5|CP021971.1_2758265_2759273_-	PRK00378, PRK00378, nucleoid-associated protein NdpA; Validated	NA|76aa|down_6|CP021971.1_2759481_2759709_+	PRK13689, PRK13689, hypothetical protein; Provisional	NA|595aa|down_7|CP021971.1_2759738_2761523_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|147aa|down_8|CP021971.1_2761732_2762173_-	cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|383aa|down_9|CP021971.1_2762637_2763786_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCA_003253795.1_ASM325379v1	CP021971	Hafnia alvei strain CBA7135 chromosome, complete genome	5	2812118-2812925	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,WYL,DEDDh,RT,DinG,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGT,GTTAACTGCCGTACAGGCAGCTTAGAAA	28,24,28	0	0	NA	NA	I-F:I-F:I-F	13,13,12	13	Orphan	cas3,WYL,DEDDh,RT,DinG,csa3	NA|86aa|up_0|CP021971.1_2811770_2812028_-,NA	NA|377aa|up_9|CP021971.1_2803253_2804384_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|114aa|up_8|CP021971.1_2804388_2804730_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|527aa|up_7|CP021971.1_2805086_2806667_+	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|348aa|up_6|CP021971.1_2806703_2807747_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|275aa|up_5|CP021971.1_2807746_2808571_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|284aa|up_4|CP021971.1_2808563_2809415_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|239aa|up_3|CP021971.1_2809401_2810118_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|237aa|up_2|CP021971.1_2810204_2810915_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|193aa|up_1|CP021971.1_2811064_2811643_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|86aa|up_0|CP021971.1_2811770_2812028_-	NA	NA|151aa|down_0|CP021971.1_2813064_2813517_-	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|81aa|down_1|CP021971.1_2813519_2813762_-	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|161aa|down_2|CP021971.1_2813758_2814241_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|329aa|down_3|CP021971.1_2814277_2815264_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|down_4|CP021971.1_2815659_2816568_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|398aa|down_5|CP021971.1_2816657_2817851_-	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY	NA|404aa|down_6|CP021971.1_2818059_2819271_+	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|342aa|down_7|CP021971.1_2819451_2820477_+	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|182aa|down_8|CP021971.1_2820559_2821105_-	pfam07437, YfaZ, YfaZ precursor	NA|478aa|down_9|CP021971.1_2821493_2822927_+	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase
