The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	2692211	420398	428871	2692211		Synechococcus_phage(33.33%)	9	NA	NA
AWQ77141.1|420398_420965_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AWQ76924.1|420967_421996_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AWQ78066.1|421988_423473_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
AWQ78242.1|423451_425641_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AWQ77465.1|425633_426305_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AWQ78215.1|426306_426570_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA	NA
AWQ76563.1|426569_427274_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AWQ76115.1|427277_428402_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWQ77582.1|428388_428871_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
>prophage 2
CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	2692211	617222	638797	2692211	terminase,integrase,capsid	Staphylococcus_phage(66.67%)	27	632572:632587	639115:639130
AWQ76103.1|617222_617951_+	putative lipoprotein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
AWQ76970.1|618142_618289_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ76093.1|618304_618628_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ76184.1|619823_620546_+	enterotoxin type E	NA	A0A1X9H080	Staphylococcus_phage	34.9	2.1e-26
AWQ77420.1|620712_621513_-	enterotoxin type C-2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
AWQ76560.1|622296_622851_+	putative penicillin binding protein	NA	A0A1W6JQE5	Staphylococcus_phage	99.5	6.3e-95
AWQ76445.1|623145_624102_-	hypothetical protein	NA	Q938J2	Temperate_phage	27.7	1.0e-07
AWQ78011.1|624094_624607_-	hypothetical protein	NA	A7J2B6	Streptococcus_phage	37.5	1.1e-21
AWQ76921.1|625047_625617_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.9	9.3e-102
AWQ77105.1|625613_625955_-	putative pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	97.3	3.2e-57
AWQ77113.1|625957_626485_-|capsid	putative determinant of capsid size	capsid	Q4ZE87	Staphylococcus_phage	96.6	3.2e-88
AWQ78181.1|626535_626754_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ76785.1|626771_627350_-	putative pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
AWQ77784.1|627361_627703_-	putative saPI1 ORF8-like protein	NA	Q4ZE66	Staphylococcus_phage	97.3	9.3e-57
AWQ77116.1|628342_628861_-	putative saPI1 ORF9-like protein	NA	Q4ZE67	Staphylococcus_phage	87.8	3.6e-84
AWQ77458.1|628857_629238_-	putative interference protein with phage growth	NA	Q4ZE71	Staphylococcus_phage	97.6	1.0e-67
AWQ77235.1|629547_631257_-	hypothetical protein	NA	Q4ZE73	Staphylococcus_phage	92.6	1.8e-302
AWQ76206.1|631270_632140_-	primase C terminal 1 family protein	NA	Q4ZE74	Staphylococcus_phage	95.8	1.4e-162
AWQ77411.1|632203_632521_-	hypothetical protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	2.4e-19
AWQ77845.1|632523_632733_-	putative pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
632572:632587	attL	CCATTTCATTATCAAT	NA	NA	NA	NA
AWQ76341.1|632725_632872_-	putative membrane protein	NA	NA	NA	NA	NA
AWQ77883.1|632883_633102_-	helix-turn-helix family protein	NA	NA	NA	NA	NA
AWQ78118.1|633137_633341_-	helix-turn-helix domain protein	NA	NA	NA	NA	NA
AWQ77127.1|633476_634280_+	helix-turn-helix domain protein	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
AWQ76114.1|634974_635376_+|integrase	phage integrase family protein	integrase	A0A0A8WF08	Clostridium_phage	35.3	8.7e-14
AWQ77505.1|635938_636403_-	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
AWQ77227.1|636424_638797_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
639115:639130	attR	CCATTTCATTATCAAT	NA	NA	NA	NA
>prophage 3
CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	2692211	691462	704402	2692211		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
AWQ77929.1|691462_692434_-	fecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AWQ77807.1|692808_693780_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AWQ76946.1|693897_696003_-	ribonucleoside-diphosphate reductase, alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWQ77763.1|695965_696364_-	nrdI protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.6e-52
AWQ76179.1|697164_698031_+	eamA-like transporter family protein	NA	NA	NA	NA	NA
AWQ77231.1|698050_698551_+	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AWQ76194.1|698891_700397_+	H+ symporter family protein	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AWQ76573.1|700666_701584_+	putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AWQ77446.1|702462_703005_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AWQ77351.1|703343_704402_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 4
CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	2692211	716373	724194	2692211		Pandoravirus(16.67%)	10	NA	NA
AWQ77325.1|716373_717525_-	chorismate binding enzyme family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
AWQ77687.1|717508_718102_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AWQ76614.1|718452_719121_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AWQ77376.1|719122_719542_+	queuosine biosynthesis protein QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWQ76942.1|719545_720259_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWQ78375.1|720357_720942_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ76675.1|721221_721662_+	electron transfer DM13 family protein	NA	NA	NA	NA	NA
AWQ77698.1|722004_722478_+	doxX family protein	NA	NA	NA	NA	NA
AWQ76319.1|722452_723139_+	response regulator	NA	NA	NA	NA	NA
AWQ78370.1|723138_724194_+	histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 5
CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	2692211	2254360	2361526	2692211	tRNA,integrase,protease,transposase	Staphylococcus_phage(87.72%)	100	2301356:2301372	2336564:2336580
AWQ77935.1|2254360_2255680_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ77360.1|2256263_2257325_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA	NA
AWQ76475.1|2257582_2259040_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA	NA
AWQ78429.1|2259032_2259755_+	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
AWQ78042.1|2259905_2261033_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AWQ77354.1|2261037_2261508_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AWQ77567.1|2261666_2262266_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA	NA
AWQ76794.1|2262290_2262443_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ77844.1|2262990_2263386_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ78365.1|2263581_2264967_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AWQ77817.1|2265419_2266241_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA	NA
AWQ77389.1|2266403_2267516_+	histidine kinase family protein	NA	NA	NA	NA	NA
AWQ78486.1|2267537_2268161_+	response regulator	NA	NA	NA	NA	NA
AWQ77853.1|2268516_2268981_+	helix-turn-helix family protein	NA	NA	NA	NA	NA
AWQ78055.1|2269159_2270284_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ76102.1|2270352_2270697_+	hypothetical protein	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AWQ78024.1|2271624_2272821_+	calcineurin-like phosphoesterase family protein	NA	NA	NA	NA	NA
AWQ77756.1|2272810_2275747_+	AAA domain protein	NA	NA	NA	NA	NA
AWQ76464.1|2275743_2276685_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AWQ77927.1|2276805_2277768_-	foldase protein PrsA	NA	NA	NA	NA	NA
AWQ77221.1|2277972_2278530_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ77161.1|2279264_2279630_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ77320.1|2279771_2280194_-	protein hit	NA	NA	NA	NA	NA
AWQ77487.1|2280327_2281068_+	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AWQ77974.1|2281060_2282284_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
AWQ76415.1|2282407_2282911_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AWQ78155.1|2283206_2284211_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AWQ77283.1|2284268_2285192_+	ferrochelatase	NA	NA	NA	NA	NA
AWQ77504.1|2285215_2286616_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AWQ76995.1|2286938_2287493_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AWQ77470.1|2288870_2289635_+	enterotoxin type D	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
AWQ78268.1|2290089_2290635_+	toxin beta-grasp domain protein	NA	A0EX09	Staphylococcus_phage	38.6	1.8e-25
AWQ76439.1|2290669_2291398_+	toxin beta-grasp domain protein	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
AWQ76682.1|2291605_2291953_+	enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	37.9	3.0e-10
AWQ76327.1|2292209_2292323_+	toxin beta-grasp domain protein	NA	NA	NA	NA	NA
AWQ76335.1|2292619_2293117_+	enterotoxin H	NA	A0A075M4C7	Staphylococcus_phage	45.5	4.7e-33
AWQ76480.1|2293399_2294176_+	enterotoxin type G	NA	NA	NA	NA	NA
AWQ76782.1|2294727_2295504_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ76359.1|2295524_2295761_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ78044.1|2295838_2296333_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ78350.1|2297166_2297955_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AWQ77995.1|2299318_2300254_+	leucotoxin LukEv	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AWQ78401.1|2300261_2301239_+	leucotoxin LukDv	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.5e-184
2301356:2301372	attL	ATTACTTTGCTAAATAG	NA	NA	NA	NA
AWQ76964.1|2301496_2301622_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ76232.1|2301608_2302400_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ76549.1|2302404_2302878_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ77870.1|2303079_2303352_+	putative membrane protein	NA	A0A2H4PQH0	Staphylococcus_phage	83.5	3.1e-31
AWQ78141.1|2303555_2303675_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ77972.1|2303824_2304406_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
AWQ78402.1|2305369_2306077_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
AWQ78176.1|2306201_2306924_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AWQ77101.1|2306981_2307701_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
AWQ78089.1|2307821_2308541_+|protease	serine protease SplF	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AWQ76108.1|2308698_2309418_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AWQ77011.1|2309778_2311335_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
AWQ78265.1|2311327_2312557_+	type I restriction modification DNA specificity domain protein	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AWQ78481.1|2313008_2313509_+|transposase	putative transposase	transposase	NA	NA	NA	NA
AWQ76246.1|2314539_2315109_+|integrase	integrase core domain protein	integrase	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
AWQ78272.1|2315306_2315879_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AWQ77831.1|2315979_2316321_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AWQ76521.1|2316348_2316987_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	88.6	1.2e-78
AWQ76518.1|2317061_2318057_-	hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AWQ77950.1|2318137_2318752_-	excalibur calcium-binding domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	93.1	1.1e-42
AWQ76342.1|2319063_2319546_+	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
AWQ77679.1|2320100_2321183_+	O-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.8	5.9e-206
AWQ77206.1|2321187_2322189_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AWQ77128.1|2322185_2322422_-	putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	2.6e-42
AWQ77529.1|2322502_2322982_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AWQ76361.1|2322962_2323733_+	prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.5e-142
AWQ76799.1|2324110_2325703_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AWQ76505.1|2326074_2327271_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AWQ76072.1|2327392_2328301_+	nuclease-related domain protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AWQ78366.1|2328512_2329346_+	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AWQ77259.1|2329408_2330017_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	96.5	1.3e-109
AWQ76854.1|2330530_2330695_-|transposase	putative transposase	transposase	A0A146ICT8	Staphylococcus_phage	98.1	2.9e-24
AWQ78496.1|2331342_2331696_-	crcB-like family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
AWQ78157.1|2331692_2332058_-	crcB-like family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AWQ78224.1|2332313_2332463_-	putative membrane protein	NA	NA	NA	NA	NA
AWQ77665.1|2332875_2333589_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AWQ78001.1|2334028_2334664_-|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWQ77819.1|2334959_2335403_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AWQ78179.1|2335389_2335533_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ76805.1|2335945_2336416_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AWQ77409.1|2336614_2336839_+	hypothetical protein	NA	NA	NA	NA	NA
2336564:2336580	attR	ATTACTTTGCTAAATAG	NA	NA	NA	NA
AWQ76156.1|2337114_2337969_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWQ77241.1|2338055_2339348_-	arsenite/antimonite efflux pump membrane family protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AWQ76657.1|2340184_2341687_+	FAD-NAD(P)-binding family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AWQ78273.1|2342167_2343211_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
AWQ78064.1|2343217_2343850_+	riboflavin synthase, alpha subunit	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AWQ76325.1|2343860_2345042_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
AWQ76530.1|2345054_2345519_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AWQ77649.1|2345640_2346642_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AWQ76165.1|2346875_2347703_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AWQ78082.1|2348273_2348675_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AWQ78002.1|2348797_2349361_-	rRNA methylase family protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AWQ76498.1|2349357_2350311_-	radical SAM superfamily protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AWQ77753.1|2350420_2351602_+	major Facilitator Superfamily protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
AWQ78390.1|2351892_2354307_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AWQ77901.1|2354328_2354640_+	rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AWQ78105.1|2354965_2361526_+	sasC/Mrp/FmtB intercellular aggregation domain protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	2.3e-305
