The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	12282	59534	2867357	integrase,transposase,tRNA	Streptococcus_phage(27.27%)	47	29530:29544	67556:67570
AWQ70323.1|12282_13569_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
AWQ67860.1|14219_14915_+	azlC family protein	NA	NA	NA	NA	NA
AWQ68366.1|14923_15241_+	branched-chain amino acid transport family protein	NA	NA	NA	NA	NA
AWQ68874.1|15603_16572_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AWQ68457.1|16879_17803_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68684.1|17817_19785_+	DHH family protein	NA	NA	NA	NA	NA
AWQ70073.1|19781_20228_+	ribosomal protein L9	NA	NA	NA	NA	NA
AWQ68955.1|20259_21660_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
AWQ68654.1|21937_23221_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
AWQ69409.1|24423_25125_+	transcriptional regulatory protein WalR	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
AWQ67857.1|25212_26964_+	sensor protein kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.5e-30
AWQ69819.1|26956_28291_+	yycH family protein	NA	NA	NA	NA	NA
AWQ68526.1|28348_29080_+	yycH family protein	NA	NA	NA	NA	NA
AWQ69034.1|29477_30269_+	metallo-beta-lactamase superfamily protein	NA	A0A0C5AJ83	Bacteriophage	35.9	7.7e-38
29530:29544	attL	TAGAAAATGAAAAAG	NA	NA	NA	NA
AWQ68429.1|30495_32814_+	LPXTG cell wall anchor domain protein	NA	NA	NA	NA	NA
AWQ69478.1|33045_33183_-	putative membrane protein	NA	NA	NA	NA	NA
AWQ69369.1|33181_33661_+	rRNA large subunit m3Psi methyltransferase RlmH	NA	NA	NA	NA	NA
AWQ69200.1|33982_35239_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ69687.1|35653_35893_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ70235.1|35924_36599_-|integrase	integrase core domain protein	integrase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
AWQ69310.1|36689_36842_-	replication family protein	NA	A0A286QS97	Streptococcus_phage	59.2	1.3e-07
AWQ68743.1|36899_37052_-	replication family protein	NA	NA	NA	NA	NA
AWQ68274.1|37086_37671_-	replication family protein	NA	NA	NA	NA	NA
AWQ68494.1|37915_38659_-	putative beta protein	NA	NA	NA	NA	NA
AWQ68112.1|38655_39177_-	plasmid recombination enzyme family protein	NA	NA	NA	NA	NA
AWQ68640.1|39679_39964_-	glyoxalase-like domain protein	NA	NA	NA	NA	NA
AWQ70046.1|40379_40706_-	kanamycin nucleotidyltransferase	NA	NA	NA	NA	NA
AWQ68789.1|40711_41041_-	kanamycin nucleotidyltransferase	NA	NA	NA	NA	NA
AWQ70037.1|41260_41935_-|integrase	integrase core domain protein	integrase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
AWQ68080.1|42199_42943_+	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA	NA
AWQ68916.1|43039_43468_+	maoC like domain protein	NA	NA	NA	NA	NA
AWQ70263.1|43513_45520_-	penicillin-binding protein 2'	NA	NA	NA	NA	NA
AWQ70373.1|45859_47377_+	methicillin resistance mecR1 protein	NA	NA	NA	NA	NA
AWQ68945.1|47376_47748_+	methicillin resistance regulatory protein MecI	NA	NA	NA	NA	NA
AWQ69314.1|48465_49365_+	ROK family protein	NA	NA	NA	NA	NA
AWQ69498.1|49478_49739_-	rhodanese-like domain protein	NA	NA	NA	NA	NA
AWQ68209.1|49874_50813_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
AWQ70126.1|50845_51910_-	dsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA	NA
AWQ68145.1|52045_52306_+	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA	NA
AWQ69330.1|52320_52950_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AWQ69917.1|53288_53951_-	mycolic acid cyclopropane synthetase family protein	NA	NA	NA	NA	NA
AWQ67903.1|54589_55123_+	rRNA adenine N-6-methyltransferase	NA	E4ZFQ0	Streptococcus_phage	53.1	8.3e-44
AWQ69940.1|55246_56029_-	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA	NA
AWQ69352.1|56421_56556_-|transposase	transposase C family protein	transposase	NA	NA	NA	NA
AWQ68009.1|56562_58455_-|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
AWQ69364.1|58441_58969_-|integrase	phage integrase family protein	integrase	A0A0A8WIF9	Clostridium_phage	28.2	1.8e-11
AWQ68284.1|59066_59534_-|integrase	phage integrase, N-terminal SAM-like domain protein	integrase	NA	NA	NA	NA
67556:67570	attR	CTTTTTCATTTTCTA	NA	NA	NA	NA
>prophage 2
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	658864	715199	2867357	integrase,transposase,tRNA	Planktothrix_phage(25.0%)	59	668153:668172	720627:720646
AWQ70125.1|658864_660526_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AWQ67915.1|660795_661431_+	hhH-GPD superbase excision DNA repair family protein	NA	NA	NA	NA	NA
AWQ68572.1|661682_662570_+	periplasmic binding family protein	NA	NA	NA	NA	NA
AWQ70197.1|662682_663669_+	fecCD transport family protein	NA	NA	NA	NA	NA
AWQ69832.1|663723_664443_+	HAD hydrolase, IA, variant 1 family protein	NA	NA	NA	NA	NA
AWQ68630.1|664426_665227_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AWQ69170.1|665362_665869_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68769.1|666030_666747_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ68344.1|666915_667704_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AWQ67958.1|667955_668330_-	transcriptional regulator SarA	NA	NA	NA	NA	NA
668153:668172	attL	AATGATTAATAATATCTTTA	NA	NA	NA	NA
AWQ67910.1|669277_670171_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68365.1|670401_670626_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68339.1|670642_670846_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68122.1|671004_671565_+|integrase	phage integrase family protein	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
AWQ68904.1|671583_673986_+	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein	NA	NA	NA	NA	NA
AWQ68826.1|673972_674398_+	na(+)/H(+) antiporter subunit B	NA	NA	NA	NA	NA
AWQ68958.1|674394_674739_+	na(+)/H(+) antiporter subunit C	NA	NA	NA	NA	NA
AWQ67882.1|674728_676225_+	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein	NA	NA	NA	NA	NA
AWQ69615.1|676225_676708_+	na+/H+ ion antiporter subunit	NA	NA	NA	NA	NA
AWQ70289.1|676704_677007_+	multiple resistance and pH regulation F family protein	NA	NA	NA	NA	NA
AWQ67866.1|676981_677419_+	monovalent cation/proton antiporter, MnhG/PhaG subunit	NA	NA	NA	NA	NA
AWQ68240.1|677758_679801_+	sodium/hydrogen exchanger family protein	NA	NA	NA	NA	NA
AWQ69120.1|679908_680370_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ68625.1|680470_680896_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ68988.1|680874_681225_-|transposase	helix-turn-helix domain of transposase ISL3 family protein	transposase	NA	NA	NA	NA
AWQ70008.1|682211_683141_-	periplasmic solute binding family protein	NA	NA	NA	NA	NA
AWQ67862.1|683137_683974_-	fecCD transport family protein	NA	NA	NA	NA	NA
AWQ68158.1|683967_684711_-	ABC transporter family protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
AWQ70025.1|684832_685477_+	iron dependent repressor, metal binding and dimerization domain protein	NA	NA	NA	NA	NA
AWQ69942.1|685556_686309_-	peptidase M50B-like family protein	NA	NA	NA	NA	NA
AWQ69374.1|686544_687309_+	putative N-acetylmannosaminyltransferase	NA	NA	NA	NA	NA
AWQ69389.1|687369_688164_-	teichoic acids export ATP-binding protein TagH	NA	NA	NA	NA	NA
AWQ68410.1|688510_689323_+	ABC-2 type transporter family protein	NA	NA	NA	NA	NA
AWQ68267.1|689475_690525_+	Poly(glycerophosphate) glycerophosphotransferase family protein	NA	NA	NA	NA	NA
AWQ67991.1|690521_691583_+	putative glycosyltransferase TagX	NA	NA	NA	NA	NA
AWQ70089.1|691645_692044_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
AWQ67845.1|692160_693456_-	penicillin binding protein 4	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
AWQ69438.1|693876_695604_+	ABC transporter transmembrane region family protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
AWQ67988.1|695960_697190_+	na+ dependent nucleoside transporter family protein	NA	NA	NA	NA	NA
AWQ70319.1|697714_698548_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ70086.1|698829_699627_+	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
AWQ70410.1|699662_700667_+	fecCD transport family protein	NA	NA	NA	NA	NA
AWQ70280.1|700663_701680_+	fecCD transport family protein	NA	NA	NA	NA	NA
AWQ69764.1|701916_702882_+	dihydroxyacetone kinase, DhaK subunit	NA	NA	NA	NA	NA
AWQ68000.1|702923_703508_+	dihydroxyacetone kinase, L subunit	NA	NA	NA	NA	NA
AWQ69400.1|703500_703863_+	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM	NA	NA	NA	NA	NA
AWQ69227.1|703978_704476_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68675.1|704932_706000_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ70347.1|706150_706297_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ70392.1|706411_707194_+	alpha/beta hydrolase fold family protein	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	25.7	7.7e-14
AWQ67865.1|707522_707951_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ67984.1|708159_708666_-	acetyltransferase domain protein	NA	NA	NA	NA	NA
AWQ69198.1|708778_709702_+	NADH(P)-binding family protein	NA	NA	NA	NA	NA
AWQ69341.1|709717_710392_+	response regulator	NA	NA	NA	NA	NA
AWQ68377.1|710384_711425_+	sensor histidine kinase GraS	NA	NA	NA	NA	NA
AWQ69741.1|711568_712330_+	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
AWQ69236.1|712319_714209_+	ftsX-like permease family protein	NA	NA	NA	NA	NA
AWQ68828.1|714354_714729_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ69411.1|714734_715199_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
720627:720646	attR	TAAAGATATTATTAATCATT	NA	NA	NA	NA
>prophage 3
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	759793	767614	2867357		Hokovirus(16.67%)	10	NA	NA
AWQ69418.1|759793_760849_-	histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AWQ68686.1|760848_761535_-	response regulator	NA	NA	NA	NA	NA
AWQ68508.1|761509_761983_-	doxX family protein	NA	NA	NA	NA	NA
AWQ68776.1|762325_762766_-	electron transfer DM13 family protein	NA	NA	NA	NA	NA
AWQ70525.1|763045_763450_-	putative membrane protein	NA	NA	NA	NA	NA
AWQ69740.1|763728_764442_-	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWQ69989.1|764445_764865_-	queuosine biosynthesis protein QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWQ69949.1|764866_765535_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AWQ69157.1|766011_766479_+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	NA	A0A0P0IKJ1	Acinetobacter_phage	43.2	2.3e-29
AWQ69531.1|766462_767614_+	chorismate binding enzyme family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 4
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	779585	791200	2867357		uncultured_Caudovirales_phage(50.0%)	9	NA	NA
AWQ69592.1|779585_780644_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
AWQ67819.1|781078_781996_-	putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
AWQ69004.1|782265_783771_-	H+ symporter family protein	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AWQ70031.1|784111_784612_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AWQ70368.1|784631_785498_-	eamA-like transporter family protein	NA	NA	NA	NA	NA
AWQ68369.1|786298_786697_+	nrdI protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AWQ69635.1|786659_788765_+	ribonucleoside-diphosphate reductase, alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWQ69888.1|788882_789854_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AWQ69699.1|790228_791200_+	fecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
>prophage 5
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	878350	951701	2867357	portal,integrase,holin,terminase,transposase,protease,tail,capsid,head	Staphylococcus_phage(71.25%)	101	871801:871816	927070:927085
871801:871816	attL	AAAAAGTAAGTATGAT	NA	NA	NA	NA
AWQ69104.1|878350_879592_+	putative cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
AWQ68956.1|879623_880046_+	SUF system FeS assembly protein, NifU family	NA	NA	NA	NA	NA
AWQ68301.1|880196_881594_+	feS assembly protein SufB	NA	NA	NA	NA	NA
AWQ68405.1|881661_882711_-|integrase	phage integrase family protein	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
AWQ69430.1|882823_883003_+	putative excisionase	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
AWQ69361.1|882982_883915_-	putative phage protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
AWQ68054.1|883946_884672_-	short C-terminal domain protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
AWQ69566.1|884699_885374_-	hypothetical protein	NA	A0A0F6N3H6	Staphylococcus_phage	99.6	2.7e-124
AWQ69654.1|885390_885723_-	helix-turn-helix domain protein	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
AWQ70228.1|885985_886180_+	helix-turn-helix domain protein	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
AWQ69113.1|886179_886947_+	phage antirepressor KilAC domain protein	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
AWQ68362.1|886947_887172_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
AWQ68141.1|887211_887661_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
AWQ69564.1|887674_887896_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
AWQ70004.1|888143_888446_+	hypothetical protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
AWQ69046.1|888450_888711_+	hypothetical protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
AWQ69858.1|888720_888942_+	hypothetical protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
AWQ69403.1|888934_889558_+	hypothetical protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
AWQ70269.1|889557_889986_+	single-stranded DNA-binding protein ssb	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
AWQ68124.1|889999_890674_+	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
AWQ70381.1|890812_891094_-	pTS system, fructose subfamily, IIA component domain protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
AWQ68570.1|891159_891930_+	conserved phage family protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
AWQ67818.1|891939_892719_+	AFG1-like ATPase family protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
AWQ67881.1|892757_892871_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	1.6e-13
AWQ69195.1|892883_893105_+	hypothetical protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
AWQ70021.1|893114_893519_+	hypothetical protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
AWQ69630.1|893523_893709_+	hypothetical protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
AWQ68558.1|893709_894015_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
AWQ70169.1|894142_894499_+	PVL ORF-50-like family protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
AWQ69896.1|894502_894745_+	phage family protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
AWQ67921.1|894759_895125_+	acetyltransferase family protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.5e-54
AWQ67927.1|895117_895372_+	hypothetical protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
AWQ70077.1|895358_895529_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	91.1	1.5e-20
AWQ68854.1|895521_896055_+	dUTP diphosphatase family protein	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
AWQ70045.1|896091_896298_+	hypothetical protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
AWQ68079.1|896294_896489_+	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
AWQ69005.1|896485_896689_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
AWQ69073.1|896681_896918_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
AWQ68986.1|896910_897084_+	transcriptional activator RinB family protein	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
AWQ68016.1|897254_897677_+	phage transcriptional regulator, RinA family protein	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
AWQ70435.1|897864_898359_+|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
AWQ70530.1|898361_899657_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0A0F6N3L3	Staphylococcus_phage	100.0	3.0e-257
AWQ70242.1|899667_901086_+|portal	phage portal protein, SPP1 family	portal	A0A0F6N4I8	Staphylococcus_phage	98.7	1.7e-269
AWQ68364.1|901319_901661_+|head	putative head morphogenesis domain protein	head	A0A0F6N3F1	Staphylococcus_phage	100.0	3.1e-44
AWQ70229.1|901633_902203_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	I1W647	Staphylococcus_phage	99.5	9.0e-105
AWQ69756.1|902275_902446_+	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	100.0	4.3e-23
AWQ68474.1|902554_902794_+	putative scaffolding protein	NA	A0A0F6N3K8	Staphylococcus_phage	85.1	2.3e-22
AWQ68642.1|902816_903032_+	hypothetical protein	NA	B2ZYY4	Staphylococcus_phage	92.5	3.1e-10
AWQ68857.1|903184_903628_+|capsid	phage major capsid protein, HK97 family	capsid	Q8SDU5	Staphylococcus_phage	100.0	4.0e-76
AWQ68388.1|903793_904024_+|head	putative major head domain protein	head	S4V686	Staphylococcus_phage	95.8	4.1e-32
AWQ68459.1|904026_904155_+	hypothetical protein	NA	E0Y3L0	Staphylococcus_virus	97.6	3.3e-15
AWQ70484.1|904333_904456_+	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	82.4	2.0e-06
AWQ68623.1|904469_904622_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	NA	NA	NA	NA
AWQ69898.1|904618_904801_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	1.5e-26
AWQ68765.1|905294_905441_+	hypothetical protein	NA	A0A0F6N3F5	Staphylococcus_phage	97.9	2.9e-20
AWQ69107.1|905452_905566_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	97.2	2.1e-13
AWQ69735.1|905571_905835_+	hypothetical protein	NA	B2ZYZ0	Staphylococcus_phage	98.9	2.6e-43
AWQ68278.1|905984_906431_+|tail	putative tail protein	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.6e-80
AWQ67816.1|906492_906729_+	phage family protein	NA	A0A0F6N4J9	Staphylococcus_phage	91.7	9.6e-29
AWQ69923.1|907101_907230_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	97.6	6.6e-16
AWQ68425.1|907665_907869_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68611.1|907849_908275_+	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	98.3	4.6e-29
AWQ68568.1|908370_910329_+	putative membrane protein	NA	Q4ZDL9	Staphylococcus_virus	100.0	8.2e-174
AWQ70056.1|910388_910700_+	hypothetical protein	NA	I1W636	Staphylococcus_phage	100.0	5.3e-51
AWQ67943.1|910712_911009_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	1.5e-42
AWQ68109.1|911264_911402_+	hypothetical protein	NA	A0A0F6N3L4	Staphylococcus_phage	95.6	5.6e-21
AWQ69612.1|911364_911679_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	4.0e-38
AWQ68917.1|912178_912496_+|tail	prophage endopeptidase tail family protein	tail	A0A0F6N3M1	Staphylococcus_phage	99.0	2.1e-50
AWQ69253.1|912854_913559_+	GDSL-like Lipase/Acylhydrolase family protein	NA	I1W634	Staphylococcus_phage	99.6	1.9e-133
AWQ67973.1|913573_914062_+	putative zn carboxypeptidase	NA	I1W633	Staphylococcus_phage	98.6	3.3e-79
AWQ70436.1|914061_914400_+	putative minor structural protein	NA	Q4ZDD6	Staphylococcus_virus	99.1	1.6e-61
AWQ68271.1|914399_915338_+	hypothetical protein	NA	A0A2H4JCV8	uncultured_Caudovirales_phage	97.4	1.9e-176
AWQ68017.1|915480_917304_+	hypothetical protein	NA	A1KX42	Staphylococcus_virus	99.2	3.9e-295
AWQ69303.1|917303_917681_+	hypothetical protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
AWQ70277.1|917684_917858_+	hypothetical protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
AWQ69526.1|917897_918197_+	hypothetical protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
AWQ70112.1|918333_920232_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	A0EX80	Staphylococcus_virus	99.5	0.0e+00
AWQ70129.1|920244_921483_+	hypothetical protein	NA	A0A0F6N3G7	Staphylococcus_phage	100.0	1.6e-210
AWQ67929.1|921488_921884_+	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
AWQ69178.1|921939_922377_+|holin	holin, phage phi LC3 family	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
AWQ69712.1|922357_923803_+	CHAP domain protein	NA	A0EWV1	Staphylococcus_virus	99.4	5.9e-294
AWQ68859.1|924208_924871_+	hypothetical protein	NA	Q4ZB12	Staphylococcus_virus	100.0	7.4e-119
AWQ68548.1|924885_925527_+	hypothetical protein	NA	Q4ZB11	Staphylococcus_virus	100.0	9.7e-116
AWQ69568.1|926054_926216_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ69366.1|926346_926862_+|protease	intracellular protease, PfpI family protein	protease	NA	NA	NA	NA
AWQ70278.1|927201_928011_+	monofunctional glycosyltransferase	NA	NA	NA	NA	NA
927070:927085	attR	AAAAAGTAAGTATGAT	NA	NA	NA	NA
AWQ69360.1|928270_929089_+	regulatory protein RecX	NA	NA	NA	NA	NA
AWQ70335.1|929090_929381_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ69730.1|929395_930913_+	putative sugar ABC transporter ATPase	NA	NA	NA	NA	NA
AWQ68206.1|930921_931758_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ69537.1|932018_932996_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ70474.1|933147_934185_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AWQ68008.1|934487_935030_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68482.1|935320_937057_+	putative multidrug export ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
AWQ69203.1|937246_938341_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ69351.1|938633_939923_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AWQ68084.1|940003_940459_+	ahpC/TSA family protein	NA	NA	NA	NA	NA
AWQ69987.1|940488_941415_+	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein	NA	NA	NA	NA	NA
AWQ70155.1|941511_941958_+	peroxide-responsive repressor PerR	NA	NA	NA	NA	NA
AWQ68461.1|950382_950634_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ68340.1|950630_951701_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
>prophage 6
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	957058	1057549	2867357	integrase,transposase,tRNA,protease	Staphylococcus_phage(87.72%)	95	997377:997393	1032587:1032603
AWQ68941.1|957058_957529_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AWQ69695.1|957687_958287_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA	NA
AWQ69436.1|958311_958464_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ69181.1|959011_959407_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ70246.1|959602_960988_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AWQ67907.1|961440_962262_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA	NA
AWQ68736.1|962424_963537_+	histidine kinase family protein	NA	NA	NA	NA	NA
AWQ70143.1|963558_964182_+	response regulator	NA	NA	NA	NA	NA
AWQ68897.1|964537_965002_+	helix-turn-helix family protein	NA	NA	NA	NA	NA
AWQ70285.1|965180_966305_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68536.1|966373_966718_+	hypothetical protein	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AWQ68028.1|967645_968842_+	calcineurin-like phosphoesterase superfamily domain protein	NA	NA	NA	NA	NA
AWQ68034.1|968831_971768_+	AAA domain protein	NA	NA	NA	NA	NA
AWQ70394.1|971764_972706_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AWQ69268.1|972826_973789_-	foldase protein PrsA	NA	NA	NA	NA	NA
AWQ68264.1|973993_974551_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68750.1|975285_975651_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ70090.1|975792_976215_-	protein hit	NA	NA	NA	NA	NA
AWQ69187.1|976348_977089_+	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AWQ70195.1|977081_978305_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
AWQ69535.1|978428_978932_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AWQ70481.1|979194_980232_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AWQ68133.1|980289_981213_+	ferrochelatase	NA	NA	NA	NA	NA
AWQ68682.1|981236_982637_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AWQ69196.1|982959_983514_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AWQ68753.1|984891_985656_+	enterotoxin type D	NA	A0A1X9H080	Staphylococcus_phage	37.1	2.3e-31
AWQ70035.1|985936_986656_+	toxin beta-grasp domain protein	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
AWQ70500.1|986690_987419_+	toxin beta-grasp domain protein	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
AWQ68681.1|987626_987974_+	enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	37.9	3.0e-10
AWQ69709.1|987948_988344_+	enterotoxin type C-1	NA	A0A097PAT7	Streptococcus_pyogenes_phage	50.4	1.5e-26
AWQ69848.1|988640_989138_+	enterotoxin H	NA	A0A075M4C7	Staphylococcus_phage	45.5	4.7e-33
AWQ70298.1|989420_990197_+	enterotoxin type G	NA	NA	NA	NA	NA
AWQ69645.1|990748_991525_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68469.1|991545_991782_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ69792.1|991859_992354_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ70176.1|993187_993976_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
AWQ68724.1|995339_996275_+	leucotoxin LukEv	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AWQ69476.1|996276_997260_+	leucotoxin LukDv	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	3.1e-185
997377:997393	attL	ATTACTTTGCTAAATAG	NA	NA	NA	NA
AWQ69831.1|997517_997643_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68375.1|997629_998421_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ70336.1|998425_998899_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68393.1|999100_999373_+	putative membrane protein	NA	A0A2H4PQH0	Staphylococcus_phage	83.5	3.1e-31
AWQ69901.1|999576_999696_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68254.1|999845_1000427_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.2	2.8e-53
AWQ68638.1|1001390_1002098_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
AWQ68004.1|1002222_1002945_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
AWQ68796.1|1003002_1003722_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
AWQ68220.1|1003842_1004562_+|protease	serine protease SplF	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AWQ69891.1|1004719_1005439_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
AWQ70158.1|1005799_1007356_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
AWQ69149.1|1007348_1008578_+	type I restriction modification DNA specificity domain protein	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
AWQ69514.1|1009029_1009530_+|transposase	putative transposase	transposase	NA	NA	NA	NA
AWQ68559.1|1010560_1011130_+|integrase	integrase core domain protein	integrase	A0A2I7SC85	Paenibacillus_phage	56.8	1.3e-55
AWQ68575.1|1011327_1011900_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
AWQ68098.1|1012000_1012342_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
AWQ70193.1|1012382_1013009_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
AWQ69066.1|1013083_1014079_-	hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
AWQ68920.1|1014159_1014774_-	excalibur calcium-binding domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	93.1	1.1e-42
AWQ68565.1|1015086_1015569_+	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.8e-80
AWQ68072.1|1016414_1017206_+	O-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.7	3.7e-149
AWQ70167.1|1017210_1018212_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
AWQ68818.1|1018208_1018466_-	putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AWQ69437.1|1018525_1019005_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AWQ68741.1|1018985_1019756_+	prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.5e-142
AWQ68819.1|1020133_1021726_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AWQ68735.1|1022097_1023294_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AWQ70268.1|1023415_1024324_+	nuclease-related domain protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
AWQ68281.1|1024535_1025369_+	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
AWQ70102.1|1025431_1026115_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	96.5	1.2e-124
AWQ69761.1|1026553_1026718_-|transposase	putative transposase	transposase	A0A146ICT8	Staphylococcus_phage	98.1	2.9e-24
AWQ69386.1|1027365_1027719_-	crcB-like family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
AWQ68136.1|1027715_1028081_-	crcB-like family protein	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AWQ69069.1|1028336_1028639_-	putative membrane protein	NA	NA	NA	NA	NA
AWQ69961.1|1028898_1029612_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AWQ67956.1|1030051_1030687_-|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWQ69967.1|1030982_1031426_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
AWQ69536.1|1031412_1031556_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ69650.1|1031968_1032439_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
AWQ69948.1|1032637_1032862_+	hypothetical protein	NA	NA	NA	NA	NA
1032587:1032603	attR	ATTACTTTGCTAAATAG	NA	NA	NA	NA
AWQ69231.1|1033137_1033992_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWQ70152.1|1034078_1035371_-	arsenite/antimonite efflux pump membrane family protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AWQ68760.1|1036207_1037710_+	FAD-NAD(P)-binding family protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
AWQ68290.1|1038190_1039234_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
AWQ68517.1|1039240_1039873_+	riboflavin synthase, alpha subunit	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
AWQ69641.1|1039883_1041065_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
AWQ70367.1|1041077_1041542_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
AWQ69483.1|1041663_1042665_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
AWQ68519.1|1042897_1043725_+	alpha/beta hydrolase family protein	NA	NA	NA	NA	NA
AWQ68358.1|1044296_1044698_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AWQ68032.1|1044820_1045384_-	rRNA methylase family protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AWQ68747.1|1045380_1046334_-	radical SAM superfamily protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AWQ69993.1|1046482_1047625_+	major Facilitator Superfamily protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	2.7e-209
AWQ68773.1|1047915_1050330_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
AWQ68712.1|1050351_1050663_+	rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
AWQ67942.1|1050988_1057549_+	sasC/Mrp/FmtB intercellular aggregation domain protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
>prophage 7
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	1108005	1177225	2867357	integrase,transposase,tRNA,protease	Staphylococcus_phage(15.38%)	60	1103275:1103292	1177181:1177198
1103275:1103292	attL	CTCCATATAATTTTGAAT	NA	NA	NA	NA
AWQ69204.1|1108005_1109229_+|tRNA	tRNA sulfurtransferase ThiI	tRNA	NA	NA	NA	NA
AWQ69755.1|1109272_1110043_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AWQ68191.1|1110140_1110635_+	putative thiol peroxidase	NA	NA	NA	NA	NA
AWQ70082.1|1110757_1111705_+	N-6 DNA Methylase family protein	NA	NA	NA	NA	NA
AWQ68379.1|1111792_1112995_+	acetate kinase	NA	NA	NA	NA	NA
AWQ67884.1|1113240_1113741_-	universal stress family protein	NA	NA	NA	NA	NA
AWQ68961.1|1113881_1115000_+	alanine dehydrogenase	NA	NA	NA	NA	NA
AWQ69613.1|1115315_1116371_-	metallopeptidase M24 family protein	NA	NA	NA	NA	NA
AWQ68233.1|1116545_1117235_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ69060.1|1117539_1117953_-	universal stress family protein	NA	NA	NA	NA	NA
AWQ68156.1|1118157_1119456_+	thioesterase superfamily protein	NA	NA	NA	NA	NA
AWQ69080.1|1119767_1120709_+	bifunctional oligoribonuclease and PAP phosphatase NrnA	NA	NA	NA	NA	NA
AWQ68975.1|1120729_1123927_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.5	4.2e-135
AWQ69413.1|1124376_1125606_+	malic enzyme, NAD binding domain protein	NA	NA	NA	NA	NA
AWQ69304.1|1125800_1126658_+	acetyl-CoA carboxylase, carboxyl transferase, beta subunit	NA	NA	NA	NA	NA
AWQ69258.1|1126657_1127602_+	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	NA	NA	NA	NA	NA
AWQ69312.1|1127870_1128839_+	6-phosphofructokinase	NA	NA	NA	NA	NA
AWQ68862.1|1128860_1130618_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
AWQ70283.1|1130965_1132327_-	amino acid permease family protein	NA	NA	NA	NA	NA
AWQ70454.1|1132674_1133796_+	citrate synthase 2	NA	NA	NA	NA	NA
AWQ69451.1|1133844_1135113_+	isocitrate dehydrogenase, NADP-dependent	NA	NA	NA	NA	NA
AWQ68763.1|1135502_1136207_+	alkaline phosphatase synthesis transcriptional regulatory protein PhoP	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
AWQ69787.1|1136227_1137868_+	sensory box protein	NA	W8CYF6	Bacillus_phage	39.4	5.7e-35
AWQ70496.1|1137876_1137999_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68905.1|1138366_1139854_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ68527.1|1140147_1142778_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
AWQ70417.1|1142793_1143666_+	formamidopyrimidine-DNA glycosylase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
AWQ69099.1|1143681_1144305_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
AWQ69455.1|1144474_1145500_+	glyceraldehyde-3-phosphate dehydrogenase, type I	NA	NA	NA	NA	NA
AWQ70453.1|1145710_1146181_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AWQ68934.1|1146181_1147582_+	replication initiation and membrane attachment family protein	NA	NA	NA	NA	NA
AWQ69164.1|1147581_1148502_+	bacterial dnaA family protein	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
AWQ69270.1|1148914_1150852_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
AWQ68888.1|1151277_1152771_+	amino acid permease family protein	NA	NA	NA	NA	NA
AWQ70390.1|1152999_1153527_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
AWQ69285.1|1153555_1153756_+	ribosomal protein L35	NA	NA	NA	NA	NA
AWQ68635.1|1153802_1154159_+	ribosomal protein L20	NA	NA	NA	NA	NA
AWQ69289.1|1154300_1154909_+	hypothetical protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
AWQ68263.1|1154927_1155857_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ69754.1|1156019_1157321_+	trigger factor	NA	NA	NA	NA	NA
AWQ69508.1|1157471_1158734_+|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
AWQ68676.1|1158887_1159478_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA	NA
AWQ69484.1|1159694_1161041_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AWQ68283.1|1161062_1161878_+	cytochrome C assembly family protein	NA	NA	NA	NA	NA
AWQ68439.1|1161919_1162846_+	porphobilinogen deaminase	NA	NA	NA	NA	NA
AWQ70041.1|1162885_1163536_+	uroporphyrinogen-III synthase HemD family protein	NA	NA	NA	NA	NA
AWQ68201.1|1163538_1164513_+	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA	NA
AWQ68524.1|1164560_1165847_+	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA	NA
AWQ69025.1|1166014_1166434_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68983.1|1166423_1167116_+	membrane AbrB duplication domain protein	NA	NA	NA	NA	NA
AWQ69313.1|1167338_1167899_-	methyladenine glycosylase family protein	NA	NA	NA	NA	NA
AWQ69938.1|1168301_1170932_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
AWQ67859.1|1170962_1172216_+	bifunctional FolC family protein	NA	NA	NA	NA	NA
AWQ69675.1|1172485_1173193_+	bacterial Peptidase A24 N-terminal domain protein	NA	NA	NA	NA	NA
AWQ68583.1|1173189_1173744_+	DNA repair RadC family protein	NA	NA	NA	NA	NA
AWQ68919.1|1173862_1174948_+|integrase	phage integrase, N-terminal SAM-like domain protein	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
AWQ69215.1|1174944_1175187_+|transposase	putative transposase B domain protein	transposase	NA	NA	NA	NA
AWQ68210.1|1175246_1175408_+|transposase	putative transposase B domain protein	transposase	NA	NA	NA	NA
AWQ68453.1|1175446_1176835_+|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
AWQ68226.1|1176841_1177225_+|transposase	transposase C family protein	transposase	NA	NA	NA	NA
1177181:1177198	attR	ATTCAAAATTATATGGAG	NA	NA	NA	NA
>prophage 8
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	1187486	1196529	2867357	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AWQ69037.1|1187486_1188491_+	holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AWQ68422.1|1188492_1189518_+|tRNA	tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AWQ69998.1|1189540_1190680_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AWQ69728.1|1190698_1190959_+	preprotein translocase, YajC subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AWQ67908.1|1191293_1193513_+	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AWQ70324.1|1193715_1195989_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
AWQ69323.1|1196010_1196529_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 9
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	1437217	1472187	2867357	lysis,transposase,protease	Moraxella_phage(11.11%)	35	NA	NA
AWQ70140.1|1437217_1438708_+|protease	putative CtpA-like serine protease	protease	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
AWQ70226.1|1439107_1439617_+	acetyltransferase domain protein	NA	NA	NA	NA	NA
AWQ68149.1|1439628_1440189_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AWQ69952.1|1440282_1440699_+	glycosyltransferase family 28 C-terminal domain protein	NA	NA	NA	NA	NA
AWQ68334.1|1440714_1441329_+	PAP2 superfamily protein	NA	NA	NA	NA	NA
AWQ69402.1|1442117_1442777_+	response regulator	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
AWQ70340.1|1442773_1444129_+	signal transduction histidine-protein kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
AWQ68942.1|1444412_1447211_+	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	NA	NA	NA	NA	NA
AWQ69715.1|1447224_1448493_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AWQ70448.1|1449072_1449882_+	putative lactoylglutathione lyase	NA	NA	NA	NA	NA
AWQ69847.1|1449910_1450114_+	putative hypothetical protein YozC	NA	NA	NA	NA	NA
AWQ69350.1|1450294_1450975_+	sigma-54 interaction domain protein	NA	R4TG24	Halovirus	34.2	2.8e-12
AWQ69300.1|1450967_1451087_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68452.1|1451100_1452987_+	cobalamin biosynthesis CobT VWA domain protein	NA	NA	NA	NA	NA
AWQ69657.1|1453298_1454555_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
AWQ68666.1|1454627_1455764_-	telA-like protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
AWQ69265.1|1455795_1456419_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
AWQ70420.1|1456443_1456713_-	acylphosphatase family protein	NA	NA	NA	NA	NA
AWQ68715.1|1456875_1457184_+	hypothetical protein	NA	NA	NA	NA	NA
AWQ68020.1|1457354_1457555_+	cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
AWQ69692.1|1457792_1458254_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ69567.1|1458253_1458637_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ68033.1|1458759_1459110_-|transposase	helix-turn-helix domain of transposase ISL3 family protein	transposase	NA	NA	NA	NA
AWQ70531.1|1459264_1459666_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ68088.1|1459905_1461171_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
AWQ70406.1|1461160_1462246_-	alanine racemase 2	NA	NA	NA	NA	NA
AWQ68562.1|1462250_1463402_-	amidohydrolase family protein	NA	NA	NA	NA	NA
AWQ68333.1|1463544_1464264_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
AWQ68134.1|1464290_1465013_-	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
AWQ69828.1|1465009_1465897_-	dihydrodipicolinate synthase	NA	NA	NA	NA	NA
AWQ67808.1|1465898_1466888_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AWQ69338.1|1466951_1468157_-	aspartate kinase domain protein	NA	NA	NA	NA	NA
AWQ68431.1|1469218_1470820_-	ABC transporter family protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
AWQ69532.1|1470966_1471869_+	conserved virulence factor B	NA	NA	NA	NA	NA
AWQ68594.1|1472004_1472187_-|transposase	putative transposase	transposase	Q9MBP7	Staphylococcus_prophage	86.7	1.5e-21
>prophage 10
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	1817820	1826230	2867357		Synechococcus_phage(33.33%)	9	NA	NA
AWQ69263.1|1817820_1818387_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AWQ70510.1|1818389_1819418_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
AWQ70524.1|1819410_1820895_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
AWQ68249.1|1820873_1823063_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
AWQ68128.1|1823055_1823727_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AWQ67982.1|1823728_1823992_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA	NA
AWQ69243.1|1823991_1824696_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AWQ70177.1|1824699_1825824_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWQ68798.1|1825810_1826230_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	1.6e-18
>prophage 11
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	1972842	2029193	2867357	portal,integrase,terminase,transposase,capsid,protease,tail,holin,head	Staphylococcus_phage(67.61%)	84	2006910:2006927	2034018:2034035
AWQ70431.1|1972842_1973304_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ70032.1|1973303_1974161_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWQ69031.1|1974366_1974750_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68350.1|1974879_1975797_-	lipoyl synthase	NA	NA	NA	NA	NA
AWQ69747.1|1975880_1977200_-	calcineurin-like phosphoesterase family protein	NA	NA	NA	NA	NA
AWQ69656.1|1977226_1978054_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AWQ70237.1|1978066_1978915_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ70006.1|1979299_1980367_-	nitronate monooxygenase family protein	NA	NA	NA	NA	NA
AWQ70060.1|1980380_1981421_-	hypothetical protein	NA	NA	NA	NA	NA
AWQ68751.1|1981785_1982100_+	putative membrane protein	NA	NA	NA	NA	NA
AWQ68952.1|1982929_1983115_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
AWQ68251.1|1983297_1983426_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	1.1e-15
AWQ68667.1|1983824_1984382_+	putative penicillin binding protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
AWQ68006.1|1984441_1985854_-	CHAP domain protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
AWQ68213.1|1985840_1986116_-|holin	holin, SPP1 family	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
AWQ70001.1|1986171_1986567_-	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
AWQ68488.1|1986752_1987058_-	collagen triple helix repeat family protein	NA	A0A0H3U4S3	Staphylococcus_phage	98.0	5.6e-45
AWQ69000.1|1987176_1987401_-	hypothetical protein	NA	Q8W5S6	Staphylococcus_phage	97.6	6.4e-14
AWQ70192.1|1987421_1987805_-	hypothetical protein	NA	A0A0F6N3G7	Staphylococcus_phage	100.0	3.2e-58
AWQ69491.1|1987817_1988252_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	A1KX46	Staphylococcus_virus	98.6	5.3e-81
AWQ69853.1|1988364_1988580_-	hypothetical protein	NA	A0A0F6N4K6	Staphylococcus_phage	100.0	1.4e-21
AWQ68083.1|1988669_1989605_-	CHAP domain protein	NA	B2ZZ02	Staphylococcus_phage	98.4	2.2e-185
AWQ68480.1|1989845_1990145_-	hypothetical protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
AWQ68722.1|1990355_1990736_-	hypothetical protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	2.9e-59
AWQ69614.1|1990735_1991962_-	hypothetical protein	NA	A1KX42	Staphylococcus_virus	98.9	4.8e-212
AWQ69636.1|1991958_1992558_-	hypothetical protein	NA	A1KX42	Staphylococcus_virus	99.4	2.3e-82
AWQ70296.1|1992557_1993712_-	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	98.4	3.4e-228
AWQ68195.1|1993726_1994230_-	hypothetical protein	NA	I1W633	Staphylococcus_phage	100.0	2.0e-68
AWQ69144.1|1994256_1994466_-	putative minor structural protein	NA	A0A0F6N4K2	Staphylococcus_phage	100.0	7.4e-33
AWQ69883.1|1994458_1994740_-	hypothetical protein	NA	A0A0F6N3M1	Staphylococcus_phage	100.0	7.7e-41
AWQ68727.1|1994750_1996379_-|tail	prophage endopeptidase tail family protein	tail	Q8SDT5	Staphylococcus_phage	100.0	1.1e-299
AWQ68441.1|1996387_1997335_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
AWQ69833.1|1997347_1999246_-	putative membrane protein	NA	B2ZYZ4	Staphylococcus_phage	100.0	4.6e-105
AWQ69384.1|1999296_2000730_-	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	99.4	1.7e-123
AWQ68677.1|2000827_2001172_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AWQ68717.1|2001201_2001567_-	phage family protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
AWQ70023.1|2001628_2002210_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
AWQ68896.1|2002228_2002612_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
AWQ69362.1|2002623_2002971_-	hypothetical protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
AWQ68368.1|2003269_2003602_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
AWQ69331.1|2003610_2003898_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
AWQ67990.1|2003919_2004864_-|capsid	phage major capsid protein, HK97 family	capsid	E0Y3L0	Staphylococcus_virus	99.0	2.2e-177
AWQ70000.1|2004906_2005527_-	hypothetical protein	NA	Q4ZDM9	Staphylococcus_virus	100.0	1.1e-63
AWQ69854.1|2005635_2005806_-	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	100.0	4.3e-23
AWQ69298.1|2005892_2006873_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	A1KX26	Staphylococcus_virus	97.5	2.3e-177
AWQ68142.1|2006879_2008418_-|portal	phage portal protein, SPP1 family	portal	S4V6D8	Staphylococcus_phage	99.0	3.8e-291
2006910:2006927	attL	ATCATCATCTTGTTCGTC	NA	NA	NA	NA
AWQ69599.1|2008428_2009706_-|terminase	phage terminase, large subunit, PBSX family	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
AWQ68465.1|2009692_2010133_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
AWQ69299.1|2010319_2010742_-	phage transcriptional regulator, RinA family protein	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
AWQ68546.1|2010765_2010912_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
AWQ69017.1|2010912_2011086_-	transcriptional activator RinB family protein	NA	Q4ZDF9	Staphylococcus_virus	98.2	6.4e-22
AWQ68353.1|2011082_2011469_-	hypothetical protein	NA	Q4ZBK1	Staphylococcus_phage	98.4	3.0e-64
AWQ69504.1|2011461_2011749_-	hypothetical protein	NA	Q4ZBK2	Staphylococcus_phage	100.0	4.3e-47
AWQ68547.1|2011785_2012295_-	dUTPase family protein	NA	M9NS45	Staphylococcus_phage	98.2	1.6e-89
AWQ69550.1|2012287_2012536_-	hypothetical protein	NA	A0A0E3T8I2	Staphylococcus_phage	93.9	6.5e-36
AWQ69616.1|2012528_2012894_-	acetyltransferase family protein	NA	A0A0F6N3K4	Staphylococcus_phage	96.3	2.4e-50
AWQ70515.1|2012890_2013304_-	yopX family protein	NA	A0A0D4DC71	Staphylococcus_phage	60.3	1.0e-17
AWQ68590.1|2013303_2013705_-	hypothetical protein	NA	A0EWR3	Staphylococcus_virus	100.0	2.0e-71
AWQ70314.1|2013719_2013884_-	phage family protein	NA	A4ZF93	Staphylococcus_virus	98.1	1.5e-25
AWQ68885.1|2013968_2014340_-	PVL ORF-50-like family protein	NA	Q4ZAY2	Staphylococcus_virus	98.4	8.5e-56
AWQ67980.1|2014340_2014526_-	hypothetical protein	NA	Q4ZA46	Staphylococcus_virus	95.1	1.3e-25
AWQ68540.1|2014525_2014933_-	endodeoxyribonuclease RusA family protein	NA	A9CR74	Staphylococcus_phage	97.8	3.2e-72
AWQ69997.1|2014942_2015164_-	hypothetical protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
AWQ69327.1|2015328_2016102_-	AAA domain family protein	NA	A0A2H4PQI3	Staphylococcus_phage	98.8	1.5e-142
AWQ68621.1|2016111_2016903_-	putative phage replisome organizer domain protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	78.3	6.6e-90
AWQ69543.1|2016874_2017654_-	AP2 domain protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	46.1	1.2e-48
AWQ69557.1|2017653_2018319_-	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	99.5	7.0e-125
AWQ69919.1|2018331_2018886_-	putative single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
AWQ68183.1|2018915_2019695_-	AAA domain protein	NA	Q9G028	Staphylococcus_virus	100.0	2.5e-142
AWQ68440.1|2019687_2019909_-	hypothetical protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
AWQ70480.1|2019918_2020179_-	hypothetical protein	NA	Q4ZDA1	Staphylococcus_virus	98.8	4.4e-43
AWQ69915.1|2020275_2020437_-	hypothetical protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
AWQ70494.1|2020429_2020651_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
AWQ68613.1|2020721_2020952_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
AWQ67906.1|2021127_2021871_-	phage antirepressor KilAC domain protein	NA	A0A0E3T9K5	Staphylococcus_phage	99.2	8.9e-137
AWQ70233.1|2021927_2022137_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	98.6	5.9e-30
AWQ69924.1|2022126_2022270_-	putative phage protein	NA	Q4ZAL7	Staphylococcus_virus	97.9	7.4e-16
AWQ69982.1|2022284_2022728_-	putative phage transcriptional regulator	NA	A0A0H3U2S6	Staphylococcus_phage	99.3	2.0e-75
AWQ68995.1|2023132_2023903_+	peptidase S24-like family protein	NA	A0A1X9H0P5	Staphylococcus_phage	97.3	3.2e-137
AWQ68871.1|2023938_2024619_+	pemK-like family protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AWQ67960.1|2024829_2025876_+|integrase	phage integrase family protein	integrase	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
AWQ69264.1|2025920_2027066_+	radical SAM superfamily protein	NA	NA	NA	NA	NA
AWQ68964.1|2027325_2027856_-	thioesterase superfamily protein	NA	NA	NA	NA	NA
AWQ68971.1|2027945_2029193_-|protease	thermophilic metalloprotease family protein	protease	NA	NA	NA	NA
2034018:2034035	attR	GACGAACAAGATGATGAT	NA	NA	NA	NA
>prophage 12
CP029663	Staphylococcus aureus strain AR_0228 chromosome, complete genome	2867357	2090315	2136256	2867357	portal,integrase,capsid,protease,tail,holin,head	Staphylococcus_phage(95.59%)	68	2109743:2109760	2134240:2134257
AWQ67863.1|2090315_2090513_+	phospholipase C domain protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
AWQ69563.1|2091143_2091299_-	hypothetical protein	NA	A0A1P8L6A1	Staphylococcus_phage	100.0	1.4e-20
AWQ69992.1|2091443_2091635_+	putative membrane protein	NA	M9NS66	Staphylococcus_phage	100.0	1.7e-23
AWQ69168.1|2091687_2092038_-	complement inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AWQ69753.1|2092722_2093172_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AWQ69862.1|2093266_2093563_-	bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AWQ68914.1|2094251_2094743_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AWQ70352.1|2094933_2095689_-	CHAP domain protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AWQ70026.1|2095700_2095955_-|holin	holin, phage phi LC3 family	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AWQ70022.1|2096166_2096301_-	putative membrane protein	NA	D2JLG3	Staphylococcus_phage	100.0	9.3e-13
AWQ70537.1|2096492_2096723_-	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	1.2e-31
AWQ69347.1|2096846_2097134_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AWQ68227.1|2097180_2097333_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AWQ69576.1|2097322_2101108_-	phage minor structural, N-terminal region domain protein	NA	Q6R866	Staphylococcus_virus	98.3	0.0e+00
AWQ68380.1|2101123_2102608_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
AWQ69075.1|2102604_2107137_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0EX03	Staphylococcus_phage	98.9	0.0e+00
AWQ69288.1|2107193_2107331_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AWQ68068.1|2107381_2107732_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AWQ68055.1|2107781_2107922_-	bacterial Ig-like domain family protein	NA	A0A2I6PDK6	Staphylococcus_phage	100.0	2.5e-16
AWQ68107.1|2108047_2108692_-|tail	phage major tail, phi13 family protein	tail	G4KNQ7	Staphylococcus_phage	99.1	1.9e-119
AWQ67889.1|2108692_2109100_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AWQ69799.1|2109096_2109501_-	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
AWQ70419.1|2109497_2109860_-|head,tail	phage head-tail joining family protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2109743:2109760	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AWQ70174.1|2109843_2110128_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AWQ67949.1|2110117_2110402_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	97.9	5.2e-45
AWQ69039.1|2110421_2111567_-|capsid	phage major capsid protein, HK97 family	capsid	A0A1W6JPL4	Staphylococcus_phage	99.7	7.3e-215
AWQ68354.1|2111589_2112327_-|protease	clp protease family protein	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
AWQ70068.1|2112310_2113474_-|portal	phage portal protein, HK97 family	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
AWQ67963.1|2113489_2115151_-	phage Terminase family protein	NA	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
AWQ67814.1|2115147_2115492_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AWQ69846.1|2115622_2115922_-	HNH endonuclease family protein	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
AWQ69291.1|2116153_2116570_-	phage transcriptional regulator, RinA family protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AWQ68549.1|2116597_2116798_-	hypothetical protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
AWQ68126.1|2116797_2116947_-	transcriptional activator RinB family protein	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AWQ68335.1|2116943_2117150_-	hypothetical protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
AWQ69856.1|2117146_2117392_-	putative membrane protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
AWQ67930.1|2117428_2117965_-	dUTPase family protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
AWQ69238.1|2117961_2118207_-	hypothetical protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
AWQ68202.1|2118221_2118386_-	phage family protein	NA	A0A2H4PQJ3	Staphylococcus_phage	98.1	1.0e-24
AWQ70439.1|2118466_2118724_-	hypothetical protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
AWQ68303.1|2118723_2119095_-	PVL ORF-50-like family protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
AWQ70099.1|2119107_2119512_-	endodeoxyribonuclease RusA family protein	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
AWQ68841.1|2119520_2119739_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
AWQ70020.1|2119745_2120639_-	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AWQ69487.1|2120668_2121139_-	single-stranded DNA-binding family protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
AWQ67893.1|2121139_2121625_-	beta-lactamase superfamily domain protein	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	9.4e-87
AWQ69827.1|2121837_2122758_-	recT family protein	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
AWQ70512.1|2122759_2124703_-	hypothetical protein	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
AWQ68866.1|2124983_2125244_-	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AWQ68984.1|2125248_2125551_-	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AWQ68663.1|2125645_2125807_-	hypothetical protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AWQ70291.1|2125803_2126127_-	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AWQ69908.1|2126181_2126562_+	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
AWQ69160.1|2126548_2126746_-	putative phi PVL orf 35-like protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
AWQ69906.1|2126761_2127511_-	phage antirepressor KilAC domain protein	NA	B7T097	Staphylococcus_virus	99.6	3.4e-136
AWQ68887.1|2127567_2127777_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
AWQ69110.1|2127769_2127910_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
AWQ69007.1|2127924_2128368_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
AWQ69694.1|2128786_2129503_+	peptidase S24-like family protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
AWQ69600.1|2129514_2130369_+	HIRAN domain protein	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
AWQ67945.1|2130442_2130589_+	hypothetical protein	NA	A0A1X9H032	Staphylococcus_phage	100.0	3.3e-19
AWQ69458.1|2130585_2130771_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
AWQ68616.1|2130841_2131024_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	96.7	6.9e-27
AWQ69829.1|2131102_2131816_+	pemK-like family protein	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AWQ68694.1|2132006_2133044_+|integrase	integrase	integrase	Q38086	Staphylococcus_phage	99.7	2.2e-178
AWQ69041.1|2133100_2133925_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	8.9e-162
AWQ69688.1|2134162_2135179_-	gamma-hemolysin component B	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2134240:2134257	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AWQ70409.1|2135200_2136256_-	hypothetical protein	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
