assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003194345.1_ASM319434v1	CP028483	Escherichia coli strain E41-1 chromosome, complete genome	1	2345019-2345142	1	CRISPRCasFinder	no	DEDDh	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG	NA,NA|75aa|down_7|CP028483.1_2353727_2353952_-,NA|30aa|down_8|CP028483.1_2354038_2354128_+	NA|471aa|up_9|CP028483.1_2334471_2335884_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP028483.1_2336440_2336650_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP028483.1_2337105_2337732_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP028483.1_2337752_2339855_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP028483.1_2339858_2340506_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP028483.1_2340569_2341238_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP028483.1_2341234_2342020_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP028483.1_2342023_2342836_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP028483.1_2342847_2344452_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP028483.1_2344577_2344883_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP028483.1_2345456_2346713_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP028483.1_2346753_2348127_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP028483.1_2348341_2348983_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP028483.1_2349022_2350171_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP028483.1_2350461_2351673_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP028483.1_2351785_2352718_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP028483.1_2352714_2353740_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|CP028483.1_2353727_2353952_-	NA	NA|30aa|down_8|CP028483.1_2354038_2354128_+	NA	NA|390aa|down_9|CP028483.1_2354293_2355463_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCA_003194345.1_ASM319434v1	CP028483	Escherichia coli strain E41-1 chromosome, complete genome	3	3223300-3223382	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG	NA,NA|65aa|down_7|CP028483.1_3232678_3232873_+,NA|61aa|down_9|CP028483.1_3233863_3234046_-	NA|47aa|up_9|CP028483.1_3207852_3207993_+	pfam01848, HOK_GEF, Hok/gef family	NA|431aa|up_8|CP028483.1_3208298_3209591_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_7|CP028483.1_3209681_3211025_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_6|CP028483.1_3211035_3211647_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_5|CP028483.1_3211805_3215912_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|322aa|up_4|CP028483.1_3217083_3218049_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|CP028483.1_3218171_3219938_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|CP028483.1_3219938_3221660_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|CP028483.1_3221701_3222406_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|CP028483.1_3222690_3222909_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|CP028483.1_3223593_3225870_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|CP028483.1_3225900_3226221_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|CP028483.1_3226543_3226768_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|CP028483.1_3226840_3228787_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|CP028483.1_3228783_3229899_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|CP028483.1_3230013_3231006_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|CP028483.1_3231002_3232661_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|65aa|down_7|CP028483.1_3232678_3232873_+	NA	NA|232aa|down_8|CP028483.1_3233085_3233781_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|61aa|down_9|CP028483.1_3233863_3234046_-	NA
GCA_003194345.1_ASM319434v1	CP028483	Escherichia coli strain E41-1 chromosome, complete genome	4	4111572-4111704	1	PILER-CR	no		cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,csa3,DEDDh,RT,DinG	NA,NA|73aa|down_7|CP028483.1_4119651_4119870_+	NA|95aa|up_9|CP028483.1_4102973_4103258_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|CP028483.1_4103260_4103494_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|CP028483.1_4103579_4104059_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|CP028483.1_4104250_4106113_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|CP028483.1_4106105_4106636_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|CP028483.1_4106743_4108075_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|CP028483.1_4108133_4108421_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|CP028483.1_4108417_4109704_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|CP028483.1_4109754_4110696_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|CP028483.1_4110710_4111481_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|CP028483.1_4111953_4113468_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|CP028483.1_4113498_4114641_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|CP028483.1_4114769_4115987_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|CP028483.1_4116059_4117613_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|CP028483.1_4117721_4118507_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|CP028483.1_4118512_4119103_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|CP028483.1_4119221_4119617_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|CP028483.1_4119651_4119870_+	NA	NA|1074aa|down_8|CP028483.1_4119877_4123099_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|CP028483.1_4123116_4124265_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
