assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	1	432086-432186	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_6|CP029678.1_424692_425076_-,NA|86aa|up_4|CP029678.1_426029_426287_-,NA|221aa|down_1|CP029678.1_433276_433939_-,NA|179aa|down_7|CP029678.1_440030_440567_-	NA|88aa|up_9|CP029678.1_422805_423069_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|CP029678.1_423368_423620_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_7|CP029678.1_424045_424627_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|CP029678.1_424692_425076_-	NA	NA|209aa|up_5|CP029678.1_425330_425957_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|86aa|up_4|CP029678.1_426029_426287_-	NA	NA|508aa|up_3|CP029678.1_426401_427925_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_2|CP029678.1_427940_428510_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_1|CP029678.1_429001_429757_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_0|CP029678.1_429837_431226_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|319aa|down_0|CP029678.1_432202_433159_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP029678.1_433276_433939_-	NA	NA|136aa|down_2|CP029678.1_434081_434489_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP029678.1_435001_435580_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP029678.1_435579_436848_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP029678.1_436885_438352_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP029678.1_438376_439918_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|CP029678.1_440030_440567_-	NA	NA|235aa|down_8|CP029678.1_440959_441664_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|CP029678.1_442062_442335_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2	676423-676515	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|169aa|down_4|CP029678.1_680262_680769_+,NA|239aa|down_5|CP029678.1_680930_681647_+	NA|208aa|up_9|CP029678.1_666216_666840_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_8|CP029678.1_667109_668048_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_7|CP029678.1_668258_668795_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_6|CP029678.1_668963_669440_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_5|CP029678.1_669479_670775_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|169aa|up_4|CP029678.1_670817_671324_+	pfam08741, YwhD, YwhD family	NA|337aa|up_3|CP029678.1_671822_672833_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|139aa|up_2|CP029678.1_673107_673524_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|CP029678.1_673520_675182_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|CP029678.1_675569_676205_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|CP029678.1_676583_677471_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|329aa|down_1|CP029678.1_677582_678569_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP029678.1_678623_679343_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP029678.1_679326_680127_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP029678.1_680262_680769_+	NA	NA|239aa|down_5|CP029678.1_680930_681647_+	NA	NA|263aa|down_6|CP029678.1_681815_682604_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP029678.1_682854_683229_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|187aa|down_8|CP029678.1_684176_684737_-	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|118aa|down_9|CP029678.1_684944_685298_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	3	852233-852318	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	852263-852288|852263-852288|852263-852288|852263-852288|852263-852288	CP029678.1_815225-815200|CP029678.1_2877996-2878021|CP029678.1_2878052-2878077|CP029678.1_815281-815256|CP029678.1_1002130-1002105	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|CP029678.1_839485_840325_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|CP029678.1_840498_841149_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|CP029678.1_841145_841382_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|CP029678.1_841650_843636_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|CP029678.1_843643_846490_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|CP029678.1_847151_848084_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|CP029678.1_848089_848929_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|94aa|up_2|CP029678.1_849140_849422_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|480aa|up_1|CP029678.1_849429_850869_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|CP029678.1_850935_851871_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|CP029678.1_852750_853662_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|CP029678.1_853658_854654_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|CP029678.1_854763_855708_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|CP029678.1_856281_856869_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|CP029678.1_857111_858014_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|CP029678.1_858715_859345_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|CP029678.1_860104_861118_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|CP029678.1_861170_862181_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|CP029678.1_862319_863510_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|CP029678.1_863631_864393_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	4	895562-895643	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	895586-895619|895586-895619	CP029678.1_1428343-1428310|CP029678.1_1517501-1517534	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|CP029678.1_894464_894578_+,NA	NA|206aa|up_9|CP029678.1_889319_889937_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP029678.1_890091_890586_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP029678.1_890984_891407_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP029678.1_891554_892271_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP029678.1_892353_892893_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP029678.1_893042_893363_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP029678.1_893506_893863_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP029678.1_894020_894401_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP029678.1_894464_894578_+	NA	NA|293aa|up_0|CP029678.1_894579_895458_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|CP029678.1_896199_896586_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|CP029678.1_896578_896875_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|CP029678.1_897124_898150_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|218aa|down_3|CP029678.1_898184_898838_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|CP029678.1_898855_899677_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|CP029678.1_899819_901040_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|CP029678.1_901127_901856_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|CP029678.1_901879_902608_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|CP029678.1_902624_903083_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|CP029678.1_903094_903427_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	5	1002131-1002413	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	1002161-1002186|1002161-1002186|1002161-1002186|1002161-1002186|1002275-1002300|1002275-1002300	CP029678.1_1002105-1002130|CP029678.1_815200-815225|CP029678.1_2878021-2877996|CP029678.1_2878077-2878052|CP029678.1_852344-852319|CP029678.1_393419-393444	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|CP029678.1_991019_992516_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|85aa|up_8|CP029678.1_992508_992763_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP029678.1_992849_993278_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP029678.1_993270_995676_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP029678.1_995806_996190_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP029678.1_996253_996847_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP029678.1_997262_997640_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP029678.1_998001_999129_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP029678.1_999436_1000627_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP029678.1_1000735_1001980_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP029678.1_1002482_1003412_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP029678.1_1003653_1005033_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP029678.1_1005022_1006228_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP029678.1_1006578_1007910_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP029678.1_1008234_1008810_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP029678.1_1008814_1009339_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP029678.1_1009354_1009930_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP029678.1_1010089_1013566_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP029678.1_1013566_1017220_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP029678.1_1017385_1018288_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	6	1135803-1135890	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|CP029678.1_1135899_1136034_-,NA|432aa|down_1|CP029678.1_1136185_1137481_+	NA|224aa|up_9|CP029678.1_1123593_1124265_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|CP029678.1_1124257_1126447_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|CP029678.1_1126425_1127910_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|CP029678.1_1127902_1128931_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|CP029678.1_1128933_1129500_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|CP029678.1_1129514_1130993_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|CP029678.1_1131014_1132262_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|CP029678.1_1132526_1133333_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|CP029678.1_1133325_1134726_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|CP029678.1_1134740_1135316_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|CP029678.1_1135899_1136034_-	NA	NA|432aa|down_1|CP029678.1_1136185_1137481_+	NA	NA|391aa|down_2|CP029678.1_1137905_1139078_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|CP029678.1_1139131_1139674_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|CP029678.1_1139827_1140094_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|CP029678.1_1140096_1141815_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|CP029678.1_1142051_1142285_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|CP029678.1_1142482_1143844_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|CP029678.1_1143840_1144860_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|CP029678.1_1144992_1145655_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	7	2077819-2077897	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2077842-2077874|2077842-2077874|2077842-2077874|2077842-2077874|2077842-2077874|2077842-2077874	CP029678.1_852299-852331|CP029678.1_1220166-1220134|CP029678.1_1428297-1428265|CP029678.1_1742773-1742805|CP029678.1_2712646-2712678|CP029678.1_1517547-1517579	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|CP029678.1_2072013_2072289_+,NA|129aa|up_1|CP029678.1_2076274_2076661_-,NA|151aa|down_1|CP029678.1_2079639_2080092_-	NA|416aa|up_9|CP029678.1_2069936_2071184_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|CP029678.1_2071195_2071396_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|CP029678.1_2071542_2072007_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|CP029678.1_2072013_2072289_+	NA	NA|406aa|up_5|CP029678.1_2072566_2073784_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|CP029678.1_2073899_2074529_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|CP029678.1_2074518_2075562_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|CP029678.1_2075558_2076260_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|CP029678.1_2076274_2076661_-	NA	NA|253aa|up_0|CP029678.1_2076877_2077636_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|CP029678.1_2078163_2079150_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|151aa|down_1|CP029678.1_2079639_2080092_-	NA	NA|244aa|down_2|CP029678.1_2080277_2081009_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_3|CP029678.1_2081010_2082324_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_4|CP029678.1_2082615_2083116_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	DEDDh|185aa|down_5|CP029678.1_2083504_2084059_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_6|CP029678.1_2084126_2085197_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_7|CP029678.1_2085443_2085974_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|down_8|CP029678.1_2086143_2087505_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|down_9|CP029678.1_2087585_2088533_-	PRK13337, PRK13337, putative lipid kinase; Reviewed
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	8	2312770-2312920	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|CP029678.1_2307641_2307872_-,NA|364aa|up_0|CP029678.1_2311660_2312752_+,NA	NA|237aa|up_9|CP029678.1_2303251_2303962_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|CP029678.1_2304082_2304526_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|CP029678.1_2304725_2305139_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|CP029678.1_2305596_2306970_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP029678.1_2307641_2307872_-	NA	NA|313aa|up_4|CP029678.1_2307902_2308841_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP029678.1_2309275_2309941_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP029678.1_2310092_2310413_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP029678.1_2310414_2311395_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP029678.1_2311660_2312752_+	NA	NA|68aa|down_0|CP029678.1_2313780_2313984_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_1|CP029678.1_2314042_2315179_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|CP029678.1_2316264_2317122_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|CP029678.1_2317189_2317972_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|CP029678.1_2318203_2320009_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|CP029678.1_2320689_2322228_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|CP029678.1_2322262_2324395_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|CP029678.1_2324406_2324841_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|CP029678.1_2324840_2325947_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|667aa|down_9|CP029678.1_2326265_2328266_-	pfam07564, DUF1542, Domain of Unknown Function (DUF1542)
GCA_003193725.1_ASM319372v1	CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	9	2436688-2436881	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2436711-2436743|2436711-2436743|2436711-2436743|2436711-2436743|2436711-2436743|2436767-2436802|2436767-2436802|2436767-2436802|2436767-2436802|2436826-2436858|2436826-2436858|2436826-2436858|2436826-2436858	CP029678.1_852299-852331|CP029678.1_1220166-1220134|CP029678.1_1428297-1428265|CP029678.1_1517547-1517579|CP029678.1_2712646-2712678|CP029678.1_1220113-1220078|CP029678.1_1921255-1921220|CP029678.1_1742712-1742747|CP029678.1_2088645-2088680|CP029678.1_852299-852331|CP029678.1_1220166-1220134|CP029678.1_1428297-1428265|CP029678.1_2712646-2712678	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|44aa|up_9|CP029678.1_2425872_2426004_-,NA|55aa|up_7|CP029678.1_2427215_2427380_+,NA|106aa|up_6|CP029678.1_2427624_2427942_+,NA	NA|44aa|up_9|CP029678.1_2425872_2426004_-	NA	NA|303aa|up_8|CP029678.1_2426174_2427083_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_7|CP029678.1_2427215_2427380_+	NA	NA|106aa|up_6|CP029678.1_2427624_2427942_+	NA	NA|1056aa|up_5|CP029678.1_2428128_2431296_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_4|CP029678.1_2431412_2432678_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|255aa|up_3|CP029678.1_2433309_2434074_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|CP029678.1_2434235_2434676_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|CP029678.1_2434668_2435880_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|CP029678.1_2435981_2436332_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|CP029678.1_2437022_2438045_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP029678.1_2438064_2438664_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP029678.1_2438670_2438904_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP029678.1_2438909_2439356_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP029678.1_2439369_2439855_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP029678.1_2439851_2441111_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP029678.1_2441173_2441668_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP029678.1_2441669_2442176_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP029678.1_2442206_2443211_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP029678.1_2443380_2443986_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
