The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	101780	160019	2872210	portal,head,holin,capsid,terminase,protease,integrase,tail	Staphylococcus_phage(97.1%)	76	115647:115664	140578:140595
AWR11884.1|101780_102524_-|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWR10691.1|102698_102983_+	10 kDa chaperonin	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
AWR09599.1|103058_104675_+	chaperonin GroL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
AWR11475.1|105585_106176_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
AWR09737.1|106529_106871_+	putative membrane protein	NA	NA	NA	NA	NA
AWR10090.1|107035_107479_+	acetyltransferase family protein	NA	NA	NA	NA	NA
AWR09920.1|108331_109639_-	ktr system potassium uptake protein B	NA	NA	NA	NA	NA
AWR10068.1|109799_110711_+	periplasmic binding family protein	NA	NA	NA	NA	NA
AWR10006.1|110772_111618_+	leucine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
AWR11900.1|111989_113213_-	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AWR09985.1|113647_114703_+	hypothetical protein	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
AWR11286.1|114724_115741_+	hypothetical protein	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
115647:115664	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AWR11435.1|115978_116803_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AWR11689.1|116859_117897_-|integrase	integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
AWR11671.1|118087_118801_-	pemK-like family protein	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
AWR11113.1|118878_119061_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
AWR10865.1|119611_120544_-	exonuclease family protein	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AWR11403.1|120559_121273_-	peptidase S24-like family protein	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AWR11311.1|121405_121669_+	helix-turn-helix family protein	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
AWR11751.1|121888_122218_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
AWR10943.1|122268_123021_+	phage antirepressor KilAC domain protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
AWR11445.1|123036_123213_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
AWR11614.1|123209_123428_-	putative phiSLT ORF78-like protein	NA	A0A0H3U2T9	Staphylococcus_phage	98.6	7.0e-34
AWR09923.1|123498_123819_+	hypothetical protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
AWR11817.1|123815_123977_+	hypothetical protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
AWR10029.1|124071_124332_+	hypothetical protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
AWR11020.1|124371_124632_+	hypothetical protein	NA	A0A0H3U2T6	Staphylococcus_phage	98.8	3.4e-43
AWR10637.1|124912_126856_+	AAA domain protein	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
AWR10794.1|126857_127778_+	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AWR09808.1|127990_128476_+	beta-lactamase superfamily domain protein	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.2e-87
AWR09653.1|128476_128947_+	single-stranded DNA-binding family protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
AWR10711.1|128976_129870_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
AWR11717.1|129876_130095_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AWR11542.1|130103_130508_+	endodeoxyribonuclease RusA family protein	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
AWR09443.1|130520_130889_+	PVL ORF-50-like family protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AWR10206.1|130892_131135_+	phage family protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
AWR09401.1|131149_131515_+	acetyltransferase family protein	NA	A0A0H3U4X7	Staphylococcus_phage	96.4	1.1e-52
AWR10595.1|131507_131744_+	hypothetical protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
AWR11059.1|131733_131976_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
AWR10653.1|131968_132502_+	dUTP diphosphatase family protein	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
AWR11056.1|132538_132784_+	putative membrane protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AWR11596.1|132780_132987_+	hypothetical protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AWR10548.1|132983_133370_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AWR10541.1|133366_133516_+	transcriptional activator RinB family protein	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AWR10463.1|133515_133716_+	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
AWR10464.1|133743_134160_+	phage transcriptional regulator, RinA family protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AWR11127.1|134391_134691_+	HNH endonuclease family protein	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AWR11323.1|134820_135165_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AWR09394.1|135161_136823_+	phage Terminase family protein	NA	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AWR10921.1|136838_138026_+|portal	phage portal protein, HK97 family	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AWR10237.1|138009_138747_+|protease	clp protease family protein	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AWR10044.1|138770_139916_+|capsid	phage major capsid protein, HK97 family	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AWR10753.1|139935_140220_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AWR10879.1|140209_140494_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AWR11087.1|140477_140840_+|head,tail	phage head-tail joining family protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
140578:140595	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
AWR11295.1|140836_141241_+	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
AWR09727.1|141645_142290_+|tail	phage major tail, phi13 family protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
AWR10033.1|142415_142556_+	bacterial Ig-like domain family protein	NA	A0A2I6PDK6	Staphylococcus_phage	97.8	7.2e-16
AWR11485.1|142605_142956_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
AWR11882.1|143006_143144_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AWR09759.1|143200_147730_+|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
AWR10746.1|147726_149211_+|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
AWR10471.1|149226_153012_+	phage minor structural, N-terminal region domain protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
AWR11455.1|153001_153154_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AWR11524.1|153200_153488_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AWR10599.1|153545_153842_+	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AWR11447.1|154033_154168_+	putative membrane protein	NA	D2JLG3	Staphylococcus_phage	100.0	9.3e-13
AWR10057.1|154379_154634_+|holin	holin, phage phi LC3 family	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
AWR11634.1|154645_155401_+	CHAP domain protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AWR10801.1|155591_156083_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AWR10176.1|156771_157068_+	bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AWR09580.1|157162_157612_-	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AWR10869.1|158296_158647_+	complement inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AWR09309.1|158699_158891_-	putative membrane protein	NA	M9NS66	Staphylococcus_phage	100.0	1.7e-23
AWR09648.1|159270_159450_-	putative membrane protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AWR11807.1|159821_160019_-	phospholipase C domain protein	NA	A0A1P8L6A7	Staphylococcus_phage	100.0	3.4e-27
>prophage 2
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	249398	366491	2872210	transposase,tRNA,protease,bacteriocin	Staphylococcus_phage(86.96%)	106	NA	NA
AWR10751.1|249398_250760_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
AWR10968.1|251252_252314_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA	NA
AWR09572.1|252571_254029_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA	NA
AWR11538.1|254021_254744_+	ABC transporter family protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
AWR11667.1|254894_256022_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AWR10097.1|256026_256497_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
AWR10488.1|256655_257255_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA	NA
AWR10233.1|257279_257432_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10054.1|258208_258604_+	putative membrane protein	NA	NA	NA	NA	NA
AWR11220.1|258799_260185_+	fumarate hydratase, class II	NA	NA	NA	NA	NA
AWR10860.1|260647_261469_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA	NA
AWR10166.1|261631_262744_+	histidine kinase family protein	NA	NA	NA	NA	NA
AWR10487.1|262765_263389_+	bacterial regulatory, luxR family protein	NA	NA	NA	NA	NA
AWR10585.1|263744_264209_+	helix-turn-helix family protein	NA	NA	NA	NA	NA
AWR09750.1|264387_265512_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09623.1|265580_265925_+	hypothetical protein	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AWR10848.1|266696_267893_+	calcineurin-like phosphoesterase superfamily domain protein	NA	NA	NA	NA	NA
AWR10482.1|267882_270819_+	AAA domain protein	NA	NA	NA	NA	NA
AWR10745.1|270815_271757_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AWR11558.1|271877_272840_-	foldase protein PrsA	NA	NA	NA	NA	NA
AWR11778.1|273044_273602_-	hypothetical protein	NA	NA	NA	NA	NA
AWR11726.1|274334_274700_-	hypothetical protein	NA	NA	NA	NA	NA
AWR09324.1|274841_275264_-	protein hit	NA	NA	NA	NA	NA
AWR09548.1|275397_276138_+	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AWR09772.1|276130_277354_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA	NA
AWR11247.1|277477_277981_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AWR11691.1|278243_279281_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AWR11103.1|279338_280262_+	ferrochelatase	NA	NA	NA	NA	NA
AWR09363.1|280285_281686_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AWR11562.1|282008_282563_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AWR10151.1|285165_285807_-	hypothetical protein	NA	A0A2H4PQI0	Staphylococcus_phage	94.8	1.1e-111
AWR10026.1|285819_286275_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
AWR11138.1|287157_288093_+	leucotoxin LukEv	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AWR11917.1|288094_289078_+	leucotoxin LukDv	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AWR10550.1|290200_290344_+	lantibiotic gallidermin	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AWR11893.1|290408_293402_+|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
AWR09802.1|293394_294639_+	lanthionine synthetase C-like family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
AWR09519.1|294654_295173_+	epidermin decarboxylase	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AWR10285.1|295182_296556_+	subtilase family protein	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AWR09967.1|296578_297271_+	lantibiotic protection ABC transporter, ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AWR09981.1|297267_298029_+	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AWR09378.1|298025_298724_+	putative membrane protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AWR11945.1|299197_299764_-	hypothetical protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AWR11120.1|300727_301435_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
AWR10805.1|301559_302282_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AWR10360.1|302339_303059_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AWR11755.1|303179_303899_+|protease	serine protease SplF	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AWR09715.1|304056_304773_+|protease	serine protease SplF	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AWR09667.1|304923_305643_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AWR09743.1|306005_307562_+	type I restriction-modification system, M subunit	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
AWR10136.1|307554_308754_+	type I restriction modification DNA specificity domain protein	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AWR09412.1|309603_310896_+	NACHT domain protein	NA	A0A2H4PQV1	Staphylococcus_phage	98.9	6.4e-98
AWR11189.1|311194_313717_+	hypothetical protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
AWR09629.1|314237_314615_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10740.1|315484_315628_+|transposase	transposase family protein	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AWR11162.1|316231_316615_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10930.1|316625_316802_+	putative membrane protein	NA	NA	NA	NA	NA
AWR10081.1|316803_316989_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09344.1|317174_317744_+	hypothetical protein	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.3e-76
AWR11413.1|317961_318513_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AWR09845.1|318610_318955_-	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AWR10014.1|318995_319466_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
AWR10505.1|319466_319622_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.9	4.7e-08
AWR11185.1|319697_320693_-	hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AWR11913.1|320773_321388_-	excalibur calcium-binding domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.3	9.5e-36
AWR10764.1|321699_322182_+	putative lipoprotein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.5e-79
AWR11254.1|322340_323819_+	O-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AWR10792.1|323823_324825_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AWR09766.1|324821_325079_-	putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AWR10570.1|325144_325618_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AWR10640.1|325598_326369_+	prolyl oligopeptidase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.3e-142
AWR09289.1|326866_327229_+|transposase	transposase IS200 like family protein	transposase	A0A1P8BMC0	Lactococcus_phage	37.8	1.8e-10
AWR09704.1|327364_328957_-	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AWR10407.1|329327_330521_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AWR09598.1|330645_331554_+	nuclease-related domain protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AWR11223.1|331765_332599_+	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AWR10001.1|332661_333270_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	96.0	1.3e-109
AWR11285.1|333302_334127_-|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	98.2	1.7e-125
AWR11352.1|334681_335035_-	crcB-like family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AWR09671.1|335031_335397_-	crcB-like family protein	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
AWR11048.1|335652_335955_-	putative membrane protein	NA	NA	NA	NA	NA
AWR10500.1|336214_336928_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AWR09449.1|337367_338003_-|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWR09369.1|338298_338742_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AWR09827.1|338728_338872_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10397.1|339284_339755_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AWR10212.1|339953_340178_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11821.1|340453_341308_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWR09794.1|341602_341998_-	arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AWR11580.1|342015_343308_-	arsenite/antimonite efflux pump membrane family protein	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AWR11364.1|344144_345647_+	FAD-NAD(P)-binding family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AWR09493.1|346127_347171_+	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
AWR09732.1|347177_347810_+	riboflavin synthase, alpha subunit	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AWR11864.1|347820_349002_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AWR11843.1|349014_349479_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AWR09517.1|349600_350602_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AWR10603.1|350835_351663_+	alpha/beta hydrolase family protein	NA	NA	NA	NA	NA
AWR11828.1|352009_352501_+	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	91.6	2.4e-74
AWR10546.1|352497_352722_+	hypothetical protein	NA	Q9MBP7	Staphylococcus_prophage	81.8	4.5e-20
AWR10747.1|353241_353643_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AWR09834.1|353762_354326_-	rRNA methylase family protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AWR10283.1|354322_355276_-	radical SAM superfamily protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AWR10324.1|355385_356567_+	major Facilitator Superfamily protein	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AWR11635.1|356857_359272_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AWR11879.1|359293_359605_+	rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AWR11943.1|359930_366491_+	sasC/Mrp/FmtB intercellular aggregation domain protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 3
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	491952	500995	2872210	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AWR10668.1|491952_492957_+	holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AWR10438.1|492958_493984_+|tRNA	tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AWR09605.1|494006_495146_+|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AWR09472.1|495164_495425_+	preprotein translocase, YajC subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AWR09601.1|495699_497979_+	protein-export membrane protein SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AWR11599.1|498181_500455_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AWR09935.1|500476_500995_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 4
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	570131	578443	2872210		Caulobacter_phage(16.67%)	7	NA	NA
AWR10802.1|570131_571931_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
AWR11028.1|572154_573261_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AWR09748.1|573391_574069_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10521.1|574071_575172_+	NIF3 family protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AWR11693.1|575285_576632_+	helicase domain protein	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AWR10036.1|576641_577532_+	putative endonuclease 4	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AWR09838.1|577657_578443_+	ABC transporter family protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	668910	761180	2872210	tRNA,head,transposase,protease,lysis	Staphylococcus_phage(20.0%)	61	NA	NA
AWR09841.1|668910_670113_+|head	poly A polymerase head domain protein	head	H7BUW3	unidentified_phage	42.5	3.2e-35
AWR10489.1|670099_671071_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AWR10597.1|671094_673788_+	hypothetical protein	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
AWR09581.1|674109_675402_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
AWR11510.1|675729_676416_+	dnaD domain protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
AWR10466.1|676405_677065_+	endonuclease III	NA	NA	NA	NA	NA
AWR09621.1|677069_677411_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11008.1|677976_680160_-	penicillin binding transpeptidase domain protein	NA	NA	NA	NA	NA
AWR10452.1|680156_680783_-	recombination protein U	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
AWR11534.1|681322_681673_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10313.1|681665_682229_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11822.1|682242_682587_+	cell cycle protein GpsB	NA	NA	NA	NA	NA
AWR11168.1|682687_682804_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09594.1|683237_684383_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10310.1|684466_684799_+	putative exported protein	NA	NA	NA	NA	NA
AWR11872.1|685004_686345_-	pepSY-associated TM helix family protein	NA	NA	NA	NA	NA
AWR11330.1|686648_690089_+	small GTP-binding domain protein	NA	NA	NA	NA	NA
AWR09662.1|690108_690987_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	6.2e-20
AWR10899.1|691461_692580_+	alanine dehydrogenase	NA	NA	NA	NA	NA
AWR11203.1|692674_693715_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AWR11865.1|693745_695068_+	amino acid permease family protein	NA	NA	NA	NA	NA
AWR10907.1|695224_696616_+	quinolone resistance protein NorB	NA	NA	NA	NA	NA
AWR10785.1|697013_728159_+	hyperosmolarity resistance protein Ebh	NA	NA	NA	NA	NA
AWR09907.1|728217_728619_-	RNase H family protein	NA	NA	NA	NA	NA
AWR11577.1|728963_729095_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11904.1|729159_729864_-	conserved hypothetical integral membrane family protein	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
AWR10299.1|730081_730303_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11783.1|730314_730566_+	scaffold Nfu/NifU N terminal family protein	NA	NA	NA	NA	NA
AWR11833.1|730603_731728_+	conserved virulence factor C	NA	NA	NA	NA	NA
AWR11656.1|731743_732181_+	bacillithiol system oxidoreductase, YphP/YqiW family protein	NA	NA	NA	NA	NA
AWR09346.1|732604_733561_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
AWR11924.1|733760_734240_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
AWR09696.1|734254_735094_+	EDD, DegV family domain protein	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
AWR10752.1|735179_735713_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
AWR11165.1|735705_736134_+	methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
AWR11463.1|736145_736646_+	glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA	NA
AWR10056.1|736645_736867_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09817.1|737058_738549_+|protease	putative CtpA-like serine protease	protease	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
AWR10824.1|738948_739458_+	acetyltransferase domain protein	NA	NA	NA	NA	NA
AWR09780.1|739469_740540_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
AWR11703.1|740556_741171_+	PAP2 superfamily protein	NA	NA	NA	NA	NA
AWR11709.1|741301_741787_-|transposase	transposase IS200 like family protein	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AWR09882.1|742307_742439_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09445.1|742700_743360_+	response regulator	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
AWR11772.1|743356_744712_+	signal transduction histidine-protein kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
AWR10078.1|744995_747794_+	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	NA	NA	NA	NA	NA
AWR09717.1|747807_749076_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AWR11916.1|749655_750465_+	putative lactoylglutathione lyase	NA	NA	NA	NA	NA
AWR11135.1|750493_750697_+	putative hypothetical protein YozC	NA	NA	NA	NA	NA
AWR09318.1|750877_751669_+	ATPase associated with various cellular activities family protein	NA	R4TG24	Halovirus	28.2	2.1e-11
AWR10742.1|751682_753569_+	cobalamin biosynthesis CobT VWA domain protein	NA	NA	NA	NA	NA
AWR11003.1|753793_755137_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
AWR11569.1|755489_755882_+|transposase	transposase DDE domain protein	transposase	A0A146ICT8	Staphylococcus_phage	93.2	7.7e-15
AWR10221.1|755911_756094_+|transposase	putative transposase	transposase	Q9MBP7	Staphylococcus_prophage	88.3	5.1e-22
AWR10261.1|756149_757286_-	telA-like protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
AWR11561.1|757317_757941_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
AWR11148.1|757965_758235_-	acylphosphatase family protein	NA	NA	NA	NA	NA
AWR11106.1|758397_758706_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11885.1|758876_759077_+	cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
AWR09901.1|759273_759675_+	putative membrane protein	NA	NA	NA	NA	NA
AWR10142.1|759914_761180_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 6
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	854315	860359	2872210	head	Staphylococcus_phage(66.67%)	10	NA	NA
AWR10011.1|854315_854450_-	hypothetical protein	NA	Q4ZE35	Staphylococcus_virus	76.2	2.9e-14
AWR10423.1|854652_854778_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10178.1|854786_854903_-	hypothetical protein	NA	NA	NA	NA	NA
AWR09494.1|855329_855578_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10340.1|855698_856283_-|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	Q4ZE35	Staphylococcus_virus	72.0	2.0e-30
AWR11282.1|856328_856580_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10318.1|857324_857510_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
AWR10981.1|858748_858955_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
AWR09620.1|859248_859461_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	3.1e-18
AWR09518.1|860161_860359_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
>prophage 7
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	1117047	1125520	2872210		Synechococcus_phage(33.33%)	9	NA	NA
AWR11890.1|1117047_1117614_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AWR11527.1|1117616_1118645_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AWR09956.1|1118637_1120122_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AWR09328.1|1120100_1122290_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AWR11086.1|1122282_1122954_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AWR11006.1|1122955_1123219_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA	NA
AWR09960.1|1123218_1123923_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AWR09646.1|1123926_1125051_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWR10453.1|1125037_1125520_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	1289834	1305663	2872210	capsid,terminase,integrase	Staphylococcus_phage(64.71%)	21	1289155:1289171	1303111:1303127
1289155:1289171	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AWR11320.1|1289834_1290389_+	putative penicillin binding protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
AWR10291.1|1290623_1291592_-	abi-like family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
AWR10315.1|1292020_1292512_-|terminase	putative terminase small subunit	terminase	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
AWR10710.1|1292695_1293754_-|capsid	phage capsid family protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
AWR11317.1|1293740_1293947_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10234.1|1294171_1294516_-	putative interference protein with phage growth	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
AWR09661.1|1295186_1297559_-	phage/plasmid primase, P4 family, C-terminal domain protein	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
AWR10095.1|1297650_1297899_-	hypothetical protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
AWR09600.1|1297899_1298283_-	putative pathogenicity island protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
AWR09645.1|1298284_1298488_-	putative pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
AWR09510.1|1298454_1298628_-	pathogenicity island family protein	NA	NA	NA	NA	NA
AWR10978.1|1298639_1298912_-	putative pathogenicity island DNA-binding protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
AWR11381.1|1298904_1299168_-	helix-turn-helix family protein	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
AWR09292.1|1299360_1299693_+	helix-turn-helix family protein	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AWR11465.1|1299704_1300163_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
AWR10209.1|1300179_1300908_+	toxin beta-grasp domain protein	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
AWR09883.1|1300931_1301660_+	toxin beta-grasp domain protein	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
AWR10339.1|1301747_1302968_+|integrase	phage integrase family protein	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
AWR11874.1|1303110_1303932_-	NLPA lipofamily protein	NA	NA	NA	NA	NA
1303111:1303127	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AWR11944.1|1303949_1304603_-	methionine import system permease protein MetP	NA	NA	NA	NA	NA
AWR11492.1|1304637_1305663_-	methionine import ATP-binding protein MetN 2	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 9
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	1384317	1399048	2872210		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AWR11644.1|1384317_1385079_-	ABC transporter family protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
AWR10269.1|1385075_1386032_-	fecCD transport family protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AWR09986.1|1386018_1386990_-	fecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AWR11449.1|1387697_1388669_-	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AWR10787.1|1388786_1390892_-	ribonucleoside-diphosphate reductase, alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWR09340.1|1390854_1391253_-	nrdI protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AWR11601.1|1392053_1392920_+	eamA-like transporter family protein	NA	NA	NA	NA	NA
AWR10980.1|1392939_1393440_+	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AWR10110.1|1393780_1395286_+	H+ symporter family protein	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AWR11336.1|1395555_1396473_+	putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AWR11365.1|1397096_1397639_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AWR09430.1|1397989_1399048_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 10
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	1411020	1418840	2872210		Pandoravirus(16.67%)	10	NA	NA
AWR10308.1|1411020_1412172_-	chorismate binding enzyme family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
AWR09310.1|1412155_1412749_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AWR11188.1|1413099_1413768_+	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AWR10181.1|1413769_1414189_+	queuosine biosynthesis protein QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWR10248.1|1414192_1414906_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWR11436.1|1415004_1415589_+	putative membrane protein	NA	NA	NA	NA	NA
AWR09757.1|1415868_1416309_+	electron transfer DM13 family protein	NA	NA	NA	NA	NA
AWR10699.1|1416650_1417124_+	doxX family protein	NA	NA	NA	NA	NA
AWR10642.1|1417098_1417785_+	response regulator	NA	NA	NA	NA	NA
AWR10661.1|1417784_1418840_+	histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 11
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	1830325	1871534	2872210	holin,head,capsid,integrase,terminase,protease,portal,tail	Staphylococcus_phage(88.24%)	69	1855126:1855141	1875585:1875600
AWR10173.1|1830325_1831081_-	CHAP domain protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AWR11732.1|1831092_1831347_-|holin	holin, phage phi LC3 family	holin	D2JLG4	Staphylococcus_phage	98.8	6.9e-41
AWR11886.1|1831558_1831693_-	putative membrane protein	NA	D2JLG3	Staphylococcus_phage	100.0	9.3e-13
AWR10933.1|1831884_1832181_-	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AWR09697.1|1832238_1832526_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AWR09970.1|1832572_1832725_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AWR11941.1|1832714_1836500_-	phage minor structural, N-terminal region domain protein	NA	A0A1X9H0H3	Staphylococcus_phage	100.0	0.0e+00
AWR11818.1|1836515_1838006_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
AWR10950.1|1838005_1842655_-|tail	phage tail tape measure protein, TP901 family, core region	tail	R9QSQ8	Staphylococcus_phage	99.2	0.0e+00
AWR11116.1|1842710_1842833_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
AWR09625.1|1842892_1843339_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
AWR10501.1|1843403_1844357_-|tail	phage major tail, phi13 family protein	tail	A7TWD0	Staphylococcus_phage	98.1	1.1e-171
AWR11560.1|1844349_1844739_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	76.2	1.5e-50
AWR10338.1|1844735_1845113_-	hypothetical protein	NA	D2JLF2	Staphylococcus_phage	87.2	3.6e-54
AWR09958.1|1845112_1845445_-|head,tail	phage head-tail joining family protein	head,tail	D2JLF1	Staphylococcus_phage	85.5	1.1e-51
AWR11803.1|1845434_1845767_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A7TWQ4	Staphylococcus_phage	97.3	3.4e-56
AWR09460.1|1845775_1845934_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
AWR10551.1|1845969_1847217_-|capsid	phage major capsid protein, HK97 family	capsid	D2JLE8	Staphylococcus_phage	99.8	1.1e-200
AWR10022.1|1847304_1847889_-|head,protease	phage prohead protease, HK97 family	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
AWR09351.1|1847881_1849132_-|portal	phage portal protein, HK97 family	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
AWR10049.1|1849137_1849338_-	putative membrane protein	NA	D2JLE5	Staphylococcus_phage	100.0	1.0e-26
AWR10635.1|1849351_1851046_-	phage Terminase family protein	NA	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
AWR09377.1|1851048_1851516_-|terminase	phage terminase, small subunit, P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
AWR11797.1|1851645_1851999_-	HNH endonuclease family protein	NA	D2JLE2	Staphylococcus_phage	100.0	1.3e-66
AWR11770.1|1852005_1852458_-	hypothetical protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
AWR09880.1|1852572_1853043_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.7e-72
AWR11264.1|1853065_1853266_-	hypothetical protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
AWR09549.1|1853265_1853916_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
AWR10135.1|1854074_1854224_-	transcriptional activator RinB family protein	NA	A7TWB4	Staphylococcus_phage	98.0	2.4e-17
AWR09421.1|1854216_1854453_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
AWR11640.1|1854477_1854714_-	hypothetical protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
AWR11266.1|1854750_1855287_-	dUTPase family protein	NA	A0A1W6JPM9	Staphylococcus_phage	99.4	4.6e-95
1855126:1855141	attL	CTTCCAATTTTTAAAA	NA	NA	NA	NA
AWR10375.1|1855279_1855450_-	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
AWR11360.1|1855436_1855691_-	hypothetical protein	NA	A7TWH5	Staphylococcus_phage	92.9	6.1e-37
AWR11663.1|1855683_1855992_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	99.0	3.1e-51
AWR09525.1|1855988_1856336_-	yopX family protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AWR11613.1|1856332_1856737_-	hypothetical protein	NA	C8CH01	Staphylococcus_phage	90.3	2.1e-60
AWR10579.1|1856749_1856998_-	phage family protein	NA	S4V683	Staphylococcus_phage	100.0	3.2e-43
AWR09612.1|1856998_1857616_-	PVL ORF-50-like family protein	NA	A0A059T7P3	Staphylococcus_phage	98.5	1.5e-81
AWR10797.1|1857616_1857802_-	hypothetical protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
AWR10526.1|1857806_1858211_-	hypothetical protein	NA	Q4ZBD8	Staphylococcus_virus	91.8	2.5e-61
AWR11154.1|1858207_1858633_-	phage N-6-adenine-methyltransferase	NA	C8CGZ6	Staphylococcus_phage	91.5	1.5e-75
AWR10952.1|1858643_1858868_-	hypothetical protein	NA	A0A059T665	Staphylococcus_phage	95.9	3.2e-34
AWR10682.1|1858880_1859042_-	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	98.1	1.3e-21
AWR11357.1|1859035_1859815_-	ATPase associated with various cellular activities family protein	NA	Q4ZD93	Staphylococcus_virus	98.8	1.3e-143
AWR10651.1|1859825_1860596_-	conserved phage family protein	NA	A0A2H4PQI2	Staphylococcus_phage	99.6	3.1e-116
AWR11172.1|1860650_1861301_+	hypothetical protein	NA	A0A2I6PCS6	Staphylococcus_phage	100.0	9.5e-119
AWR11754.1|1861294_1861414_-	hypothetical protein	NA	A0A2H4PQI4	Staphylococcus_phage	100.0	7.5e-14
AWR09578.1|1861410_1862082_-	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	97.3	5.4e-125
AWR09972.1|1862094_1862646_-	putative single-strand DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
AWR10876.1|1862674_1863463_-	AAA domain protein	NA	Q4ZBM5	Staphylococcus_phage	99.6	7.5e-142
AWR11270.1|1863455_1863677_-	hypothetical protein	NA	A0A1X9H047	Staphylococcus_phage	98.6	4.6e-33
AWR11666.1|1863686_1863947_-	hypothetical protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	1.3e-42
AWR10726.1|1864040_1864361_-	hypothetical protein	NA	S4V968	Staphylococcus_phage	100.0	4.8e-55
AWR09828.1|1864540_1864804_-	homeo-like domain protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
AWR10830.1|1865048_1865375_-	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
AWR11427.1|1865595_1865748_+	hypothetical protein	NA	A0ZS13	Staphylococcus_virus	100.0	2.6e-19
AWR11830.1|1865701_1865941_-	hypothetical protein	NA	A0ZS12	Staphylococcus_virus	100.0	2.9e-33
AWR10116.1|1866174_1866435_-	putative transcriptional regulator	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
AWR10023.1|1866448_1867228_-	phage antirepressor KilAC domain protein	NA	A0A2H4PQV4	Staphylococcus_phage	96.5	2.0e-139
AWR11245.1|1867295_1867565_+	hypothetical protein	NA	A0A059NT53	Lactococcus_phage	45.6	1.2e-11
AWR11259.1|1867569_1867737_-	hypothetical protein	NA	NA	NA	NA	NA
AWR09703.1|1867770_1868079_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	88.2	1.1e-43
AWR10272.1|1868093_1868312_-	helix-turn-helix family protein	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
AWR10493.1|1868453_1869173_+	helix-turn-helix family protein	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
AWR11579.1|1869242_1869425_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
AWR09640.1|1869482_1869608_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	3.3e-12
AWR09626.1|1869604_1870219_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
AWR09663.1|1870328_1871534_+|integrase	phage integrase family protein	integrase	A7YGM7	Staphylococcus_virus	99.3	1.6e-220
1875585:1875600	attR	TTTTAAAAATTGGAAG	NA	NA	NA	NA
>prophage 12
CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2872210	2166530	2210045	2872210	transposase,integrase	Staphylococcus_phage(50.0%)	49	2168974:2169033	2210046:2210105
AWR11804.1|2166530_2167544_-|transposase	transposase IS116/IS110/IS902 family protein	transposase	A0A1X9I619	Streptococcus_phage	38.0	6.0e-51
AWR09513.1|2168030_2168846_-	lysophospholipase family protein	NA	NA	NA	NA	NA
2168974:2169033	attL	AGGTTCTGTTGCAAAGTAAAAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGC	NA	NA	NA	NA
AWR11424.1|2169033_2169399_-	DDE domain protein	NA	A0A0N9RU54	Staphylococcus_phage	95.9	1.3e-61
AWR11349.1|2169461_2169707_-|transposase	putative transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.5	1.9e-32
AWR11457.1|2169750_2169903_+	putative cadmium-transporting ATPase domain protein	NA	NA	NA	NA	NA
AWR11850.1|2169979_2170411_-	universal stress family protein	NA	NA	NA	NA	NA
AWR10439.1|2170912_2171359_+	arginine repressor, C-terminal domain protein	NA	NA	NA	NA	NA
AWR10894.1|2171627_2172863_+	arginine deiminase	NA	NA	NA	NA	NA
AWR10396.1|2172948_2174370_+	arginine-ornithine antiporter	NA	NA	NA	NA	NA
AWR11307.1|2174411_2175101_+	HTH-type transcriptional regulator ArcR	NA	NA	NA	NA	NA
AWR09872.1|2175138_2176137_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
AWR10279.1|2176156_2177086_+	carbamate kinase	NA	NA	NA	NA	NA
AWR10358.1|2177185_2178010_-|integrase	integrase core domain protein	integrase	A0A0N9SIX5	Staphylococcus_phage	89.4	2.9e-64
AWR09789.1|2178993_2179344_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11622.1|2179577_2179742_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10038.1|2179757_2180261_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09908.1|2180274_2180499_+	hypothetical protein	NA	NA	NA	NA	NA
AWR09560.1|2180753_2181881_-	alcohol dehydrogenase GroES-like domain protein	NA	A0A2K9L7I1	Tupanvirus	30.9	6.9e-16
AWR10708.1|2182062_2182191_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11764.1|2182378_2182876_+	acetyltransferase domain protein	NA	NA	NA	NA	NA
AWR09273.1|2183186_2183354_-	hypothetical protein	NA	NA	NA	NA	NA
AWR09771.1|2183388_2184198_+|integrase	integrase core domain protein	integrase	A0A0N9SIX5	Staphylococcus_phage	94.8	6.4e-56
AWR09272.1|2184768_2185128_+	tic20-like family protein	NA	NA	NA	NA	NA
AWR10606.1|2185204_2185534_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10940.1|2185625_2185817_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10846.1|2185913_2186879_-	HNH endonuclease family protein	NA	NA	NA	NA	NA
AWR11125.1|2187280_2187451_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11746.1|2188367_2188988_-	hypothetical protein	NA	NA	NA	NA	NA
AWR11624.1|2189116_2189488_-	HNH endonuclease family protein	NA	NA	NA	NA	NA
AWR10715.1|2189484_2189622_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10777.1|2189740_2190745_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA	NA
AWR10483.1|2190822_2190996_+	putative rhodanese-like protein	NA	NA	NA	NA	NA
AWR09425.1|2191368_2192859_-	divergent AAA domain protein	NA	NA	NA	NA	NA
AWR09524.1|2193531_2194581_-	putative actin depolymerizing protein	NA	NA	NA	NA	NA
AWR10732.1|2194719_2195010_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10789.1|2195009_2196797_+	hypothetical protein	NA	NA	NA	NA	NA
AWR11207.1|2197030_2198380_+	resolvase, N terminal domain protein	NA	Q9T200	Bacillus_phage	24.8	1.4e-18
AWR11303.1|2198401_2200030_+	resolvase, N terminal domain protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	5.4e-46
AWR10083.1|2200551_2200902_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10728.1|2200988_2201300_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10833.1|2201314_2201821_+	hypothetical protein	NA	NA	NA	NA	NA
AWR10389.1|2201956_2203480_+|transposase	transposase DDE domain protein	transposase	A0ZS58	Staphylococcus_virus	75.2	1.6e-209
AWR11302.1|2203470_2203731_-	hypothetical protein	NA	NA	NA	NA	NA
AWR10150.1|2203702_2204689_-	blaR1 peptidase M56 family protein	NA	NA	NA	NA	NA
AWR09486.1|2204788_2206795_+	penicillin-binding protein 2'	NA	NA	NA	NA	NA
AWR10528.1|2206840_2207269_-	maoC like domain protein	NA	NA	NA	NA	NA
AWR09466.1|2207365_2208109_-	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA	NA
AWR11155.1|2208945_2209113_-	HMG-CoA synthase domain protein	NA	NA	NA	NA	NA
AWR11951.1|2209370_2210045_+|integrase	integrase core domain protein	integrase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
2210046:2210105	attR	GCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCT	NA	NA	NA	NA
