assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	1	214865-214943	1	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,DinG,WYL,csa3	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	214888-214920|214888-214920|214888-214920|214888-214920|214888-214920|214888-214920	CP029669.1_549974-550006|CP029669.1_818292-818260|CP029669.1_1026415-1026383|CP029669.1_1350400-1350432|CP029669.1_2452769-2452801|CP029669.1_728977-729009	NA	1	1	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA|151aa|up_1|CP029669.1_212669_213122_+,NA|129aa|down_1|CP029669.1_216100_216487_+,NA|92aa|down_6|CP029669.1_220472_220748_-	NA|316aa|up_9|CP029669.1_204228_205176_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|up_8|CP029669.1_205256_206618_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|up_7|CP029669.1_206787_207318_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_6|CP029669.1_207564_208635_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_5|CP029669.1_208702_209257_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|167aa|up_4|CP029669.1_209645_210146_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_3|CP029669.1_210437_211751_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_2|CP029669.1_211752_212484_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|151aa|up_1|CP029669.1_212669_213122_+	NA	NA|329aa|up_0|CP029669.1_213611_214598_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|CP029669.1_215125_215884_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|CP029669.1_216100_216487_+	NA	NA|234aa|down_2|CP029669.1_216501_217203_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|CP029669.1_217199_218243_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|CP029669.1_218232_218862_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|CP029669.1_218977_220195_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|CP029669.1_220472_220748_-	NA	NA|155aa|down_7|CP029669.1_220754_221219_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|CP029669.1_221365_221566_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_9|CP029669.1_221577_222825_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	2	1244133-1244441	1,2	CRT,CRISPRCasFinder	no		DEDDh,cas3,DinG,WYL,csa3	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	1244246-1244271|1244246-1244271|1244360-1244385|1244386-1244418	CP029669.1_1350412-1350387|CP029669.1_1809288-1809313|CP029669.1_1387507-1387532|CP029669.1_1306897-1306865	NA:NA	4,1	4	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA,NA	NA|301aa|up_9|CP029669.1_1228257_1229160_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|CP029669.1_1229325_1232979_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|CP029669.1_1232979_1236456_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|CP029669.1_1236615_1237191_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|CP029669.1_1237206_1237731_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|CP029669.1_1237735_1238311_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|CP029669.1_1238635_1239967_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|CP029669.1_1240317_1241523_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|CP029669.1_1241512_1242892_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|CP029669.1_1243133_1244063_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|CP029669.1_1244565_1245810_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|CP029669.1_1245918_1247109_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|CP029669.1_1247416_1248544_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|CP029669.1_1248905_1249283_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|CP029669.1_1249698_1250292_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|CP029669.1_1250355_1250739_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|CP029669.1_1250869_1253275_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|CP029669.1_1253267_1253696_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|85aa|down_8|CP029669.1_1253782_1254037_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|CP029669.1_1254029_1255526_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	3	1307145-1307226	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,WYL,csa3	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1307169-1307202|1307169-1307202	CP029669.1_729022-729055|CP029669.1_818247-818214	NA	1	1	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA,NA|38aa|down_1|CP029669.1_1308209_1308323_-	NA|111aa|up_9|CP029669.1_1299360_1299693_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|153aa|up_8|CP029669.1_1299704_1300163_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|243aa|up_7|CP029669.1_1300179_1300908_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|up_6|CP029669.1_1300931_1301660_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|407aa|up_5|CP029669.1_1301747_1302968_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|274aa|up_4|CP029669.1_1303110_1303932_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|218aa|up_3|CP029669.1_1303949_1304603_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|CP029669.1_1304637_1305663_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|CP029669.1_1305912_1306209_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|CP029669.1_1306201_1306588_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|CP029669.1_1307329_1308208_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP029669.1_1308209_1308323_-	NA	NA|127aa|down_2|CP029669.1_1308386_1308767_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP029669.1_1308924_1309281_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP029669.1_1309424_1309745_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP029669.1_1309894_1310434_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP029669.1_1310516_1311233_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP029669.1_1311380_1311803_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP029669.1_1312201_1312696_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP029669.1_1312850_1313468_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	4	1350413-1350498	4	CRISPRCasFinder	no	cas3	DEDDh,cas3,DinG,WYL,csa3	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	1350443-1350468|1350443-1350468	CP029669.1_1387532-1387507|CP029669.1_1387476-1387451	NA	1	1	Unclear	DEDDh,cas3,DinG,WYL,csa3	NA,NA	NA|254aa|up_9|CP029669.1_1338394_1339156_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|CP029669.1_1339277_1340468_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|CP029669.1_1340606_1341617_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|CP029669.1_1341669_1342683_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|CP029669.1_1343385_1344015_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|CP029669.1_1344716_1345619_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|CP029669.1_1345861_1346449_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|CP029669.1_1347022_1347967_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|CP029669.1_1348076_1349072_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|CP029669.1_1349068_1349980_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|CP029669.1_1350859_1351795_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|CP029669.1_1351861_1353301_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|94aa|down_2|CP029669.1_1353308_1353590_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|280aa|down_3|CP029669.1_1353801_1354641_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|CP029669.1_1354646_1355579_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|CP029669.1_1356240_1359087_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|CP029669.1_1359094_1361080_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|CP029669.1_1361348_1361585_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|CP029669.1_1361581_1362232_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|CP029669.1_1362405_1363245_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	5	1526350-1526442	5	CRISPRCasFinder	no		DEDDh,cas3,DinG,WYL,csa3	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA|239aa|up_5|CP029669.1_1521217_1521934_-,NA|169aa|up_4|CP029669.1_1522095_1522602_-,NA	NA|118aa|up_9|CP029669.1_1517566_1517920_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|187aa|up_8|CP029669.1_1518127_1518688_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|125aa|up_7|CP029669.1_1519635_1520010_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP029669.1_1520260_1521049_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP029669.1_1521217_1521934_-	NA	NA|169aa|up_4|CP029669.1_1522095_1522602_-	NA	NA|267aa|up_3|CP029669.1_1522737_1523538_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP029669.1_1523521_1524241_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|329aa|up_1|CP029669.1_1524295_1525282_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|CP029669.1_1525393_1526281_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP029669.1_1526659_1527295_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|CP029669.1_1527682_1529344_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|CP029669.1_1529340_1529757_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|CP029669.1_1530031_1531042_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|169aa|down_4|CP029669.1_1531540_1532047_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|CP029669.1_1532089_1533385_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|CP029669.1_1533424_1533901_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|CP029669.1_1534069_1534606_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|CP029669.1_1534816_1535755_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|208aa|down_9|CP029669.1_1536024_1536648_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	6	1770601-1770702	6	CRISPRCasFinder	no		DEDDh,cas3,DinG,WYL,csa3	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA|179aa|up_7|CP029669.1_1762219_1762756_+,NA|221aa|up_1|CP029669.1_1768847_1769510_+,NA|64aa|down_4|CP029669.1_1776565_1776757_+,NA|128aa|down_6|CP029669.1_1777710_1778094_+	NA|91aa|up_9|CP029669.1_1760451_1760724_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|CP029669.1_1761122_1761827_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|CP029669.1_1762219_1762756_+	NA	NA|514aa|up_6|CP029669.1_1762868_1764410_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|CP029669.1_1764434_1765901_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|CP029669.1_1765938_1767207_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|CP029669.1_1767206_1767785_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|CP029669.1_1768297_1768705_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|CP029669.1_1768847_1769510_+	NA	NA|319aa|up_0|CP029669.1_1769627_1770584_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|463aa|down_0|CP029669.1_1771560_1772949_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_1|CP029669.1_1773029_1773785_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_2|CP029669.1_1774276_1774846_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_3|CP029669.1_1774861_1776385_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|64aa|down_4|CP029669.1_1776565_1776757_+	NA	NA|209aa|down_5|CP029669.1_1776829_1777456_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|CP029669.1_1777710_1778094_+	NA	NA|194aa|down_7|CP029669.1_1778159_1778741_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|84aa|down_8|CP029669.1_1779166_1779418_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|88aa|down_9|CP029669.1_1779717_1779981_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	7	2287329-2287502	1,7	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,DinG,WYL,csa3	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	18	2287382-2287398|2287382-2287398|2287382-2287398|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467|2287452-2287467	CP029669.1_1355837-1355853|CP029669.1_1355892-1355908|CP029669.1_1932831-1932815|CP029669.1_203983-203998|CP029669.1_204041-204056|CP029669.1_728994-729009|CP029669.1_813863-813878|CP029669.1_818275-818260|CP029669.1_1026398-1026383|CP029669.1_1127010-1127025|CP029669.1_1306872-1306887|CP029669.1_1809283-1809268|CP029669.1_2452786-2452801|CP029669.1_371424-371409|CP029669.1_549991-550006|CP029669.1_772207-772222|CP029669.1_1030366-1030351|CP029669.1_2639084-2639099	NA:NA	2,1	2	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA|40aa|up_1|CP029669.1_2284348_2284468_+,NA	NA|205aa|up_9|CP029669.1_2278006_2278621_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP029669.1_2278613_2279864_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP029669.1_2279879_2280893_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP029669.1_2280861_2281440_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP029669.1_2281436_2282015_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP029669.1_2282007_2282712_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP029669.1_2282708_2283467_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP029669.1_2283463_2284096_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|40aa|up_1|CP029669.1_2284348_2284468_+	NA	NA|682aa|up_0|CP029669.1_2285185_2287231_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP029669.1_2287677_2288730_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP029669.1_2288716_2289589_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|371aa|down_2|CP029669.1_2289854_2290967_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_3|CP029669.1_2291256_2291817_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_4|CP029669.1_2292664_2293327_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_5|CP029669.1_2293343_2294036_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_6|CP029669.1_2294032_2294800_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_7|CP029669.1_2295034_2295535_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_8|CP029669.1_2295537_2296014_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|204aa|down_9|CP029669.1_2296092_2296704_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	8	2728266-2728346	8	CRISPRCasFinder	no		DEDDh,cas3,DinG,WYL,csa3	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	7	2728291-2728321|2728291-2728321|2728291-2728321|2728291-2728321|2728291-2728321|2728291-2728321|2728291-2728321	CP029669.1_728981-729011|CP029669.1_818288-818258|CP029669.1_1026411-1026381|CP029669.1_1126997-1127027|CP029669.1_1350404-1350434|CP029669.1_1809296-1809266|CP029669.1_2452773-2452803	NA	1	1	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA,NA|106aa|down_6|CP029669.1_2737087_2737405_-,NA|55aa|down_7|CP029669.1_2737649_2737814_-,NA|44aa|down_9|CP029669.1_2739025_2739157_+	NA|202aa|up_9|CP029669.1_2721158_2721764_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP029669.1_2721933_2722938_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP029669.1_2722968_2723475_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP029669.1_2723476_2723971_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP029669.1_2724033_2725293_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP029669.1_2725289_2725775_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP029669.1_2725788_2726235_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP029669.1_2726240_2726474_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP029669.1_2726480_2727080_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP029669.1_2727099_2728122_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|117aa|down_0|CP029669.1_2728697_2729048_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_1|CP029669.1_2729149_2730361_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_2|CP029669.1_2730353_2730794_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_3|CP029669.1_2730955_2731720_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|422aa|down_4|CP029669.1_2732351_2733617_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_5|CP029669.1_2733733_2736901_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_6|CP029669.1_2737087_2737405_-	NA	NA|55aa|down_7|CP029669.1_2737649_2737814_-	NA	NA|303aa|down_8|CP029669.1_2737946_2738855_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|44aa|down_9|CP029669.1_2739025_2739157_+	NA
GCA_003193685.1_ASM319368v1	CP029669	Staphylococcus aureus strain AR_0223 chromosome, complete genome	9	2852114-2852204	9	CRISPRCasFinder	no	csa3	DEDDh,cas3,DinG,WYL,csa3	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,WYL,csa3	NA,NA|364aa|down_0|CP029669.1_2852220_2853312_-,NA|77aa|down_5|CP029669.1_2857100_2857331_+	NA|1103aa|up_9|CP029669.1_2831327_2834636_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|667aa|up_8|CP029669.1_2836763_2838764_+	pfam07564, DUF1542, Domain of Unknown Function (DUF1542)	NA|369aa|up_7|CP029669.1_2839082_2840189_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|CP029669.1_2840188_2840623_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|CP029669.1_2840634_2842767_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_4|CP029669.1_2842801_2844340_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_3|CP029669.1_2845020_2846826_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_2|CP029669.1_2847057_2847840_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_1|CP029669.1_2847907_2848765_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|379aa|up_0|CP029669.1_2849850_2850987_+	pfam02037, SAP, SAP domain	NA|364aa|down_0|CP029669.1_2852220_2853312_-	NA	NA|327aa|down_1|CP029669.1_2853577_2854558_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP029669.1_2854559_2854880_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP029669.1_2855031_2855697_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP029669.1_2856131_2857070_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP029669.1_2857100_2857331_+	NA	NA|458aa|down_6|CP029669.1_2858002_2859376_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP029669.1_2859833_2860247_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP029669.1_2860446_2860890_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP029669.1_2861010_2861721_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
