The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	1585710	1592800	9269701		Salmonella_phage(16.67%)	6	NA	NA
AWO88469.1|1585710_1586175_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	8.5e-45
AWO88470.1|1586294_1586780_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	6.8e-21
AWO88471.1|1586888_1587443_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	31.8	1.7e-15
AWO88472.1|1587458_1589144_-	long-chain-fatty-acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.9	6.9e-44
AWO88473.1|1589337_1590801_-	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	35.1	3.0e-27
AWO95017.1|1590991_1592800_-	beta-(1-->2)glucan export ATP-binding/permease NdvA	NA	W8CYL7	Bacillus_phage	25.0	3.8e-32
>prophage 2
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	1841806	1900235	9269701	transposase	Bacillus_phage(14.29%)	45	NA	NA
AWO88688.1|1841806_1842841_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWO95032.1|1842810_1843176_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88689.1|1843986_1844220_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88690.1|1845526_1845850_+	hypothetical protein	NA	NA	NA	NA	NA
AWO95033.1|1846514_1846970_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88691.1|1847458_1847620_+	Flp family type IVb pilin	NA	NA	NA	NA	NA
AWO88692.1|1847689_1848754_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWO95034.1|1848984_1851858_+	deubiquitinase	NA	A0A127AWB9	Bacillus_phage	35.2	1.4e-12
AWO88693.1|1852222_1853245_+	tryptophan tryptophylquinone biosynthesis enzyme MauG	NA	NA	NA	NA	NA
AWO88694.1|1853683_1854745_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88695.1|1854749_1855109_-	methylamine utilization protein	NA	NA	NA	NA	NA
AWO88696.1|1855505_1856609_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AWO88697.1|1857380_1858445_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWO88698.1|1858601_1859361_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWO88699.1|1859608_1860001_-	hypothetical protein	NA	NA	NA	NA	NA
AWO95035.1|1860308_1860692_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88700.1|1861014_1861413_-	hypothetical protein	NA	NA	NA	NA	NA
AWO95036.1|1862000_1863206_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWO88701.1|1864382_1864571_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88702.1|1865600_1865873_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88703.1|1866368_1866536_+	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
AWO88704.1|1869201_1870548_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
AWO88705.1|1870580_1872269_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWO88706.1|1872265_1873228_+	ABC transporter permease	NA	NA	NA	NA	NA
AWO88707.1|1873224_1874106_+	ABC transporter permease	NA	NA	NA	NA	NA
AWO95037.1|1873949_1875830_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	5.7e-15
AWO88708.1|1877985_1878315_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
AWO88709.1|1878455_1880069_+	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	32.5	9.5e-67
AWO95038.1|1880137_1880734_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88710.1|1881762_1882005_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88711.1|1882268_1882697_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88712.1|1882630_1882936_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88713.1|1885589_1885871_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88714.1|1886026_1886221_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88715.1|1886338_1887301_+	DUF1738 domain-containing protein	NA	A0A1B1IWW8	uncultured_Mediterranean_phage	35.0	1.2e-37
AWO88716.1|1887406_1889560_+	DNA-binding protein	NA	G8DH78	Emiliania_huxleyi_virus	32.5	1.2e-29
AWO88717.1|1889707_1891048_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AWO88718.1|1892088_1892772_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
AWO95039.1|1892846_1893803_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
AWO88719.1|1893799_1895002_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
AWO88720.1|1895007_1895244_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
AWO88721.1|1895292_1895505_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88722.1|1895902_1896283_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88723.1|1898469_1898658_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88724.1|1898927_1900235_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	1.6e-93
>prophage 3
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	1919676	1981662	9269701	transposase	Acidithiobacillus_phage(40.0%)	45	NA	NA
AWO88737.1|1919676_1920408_-|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
AWO88738.1|1922583_1922946_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
AWO88739.1|1922942_1923446_+	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
AWO88740.1|1924193_1925549_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AWO88741.1|1925874_1926063_-	hypothetical protein	NA	NA	NA	NA	NA
AWO95043.1|1926998_1927313_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88742.1|1927309_1927600_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
AWO88743.1|1928072_1928832_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	2.1e-08
AWO88744.1|1928959_1930309_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AWO88745.1|1930448_1931111_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWO88746.1|1931107_1931623_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88747.1|1936526_1936814_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88748.1|1936801_1937011_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88749.1|1939790_1940231_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88750.1|1940656_1941421_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AWO88751.1|1941417_1942692_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88752.1|1942688_1943570_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88753.1|1943550_1945431_-	ATPase	NA	NA	NA	NA	NA
AWO88754.1|1947442_1948648_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88755.1|1948644_1950369_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88756.1|1951653_1952100_+|transposase	transposase	transposase	NA	NA	NA	NA
AWO88757.1|1952501_1953254_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88758.1|1953404_1953896_+	hypothetical protein	NA	NA	NA	NA	NA
AWO95044.1|1954008_1954503_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88759.1|1954856_1955663_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AWO88760.1|1955951_1956662_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
AWO95045.1|1956874_1957159_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88761.1|1957406_1957748_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88762.1|1958027_1958231_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88763.1|1958268_1958493_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88764.1|1958536_1958917_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88765.1|1958945_1960484_-	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
AWO88766.1|1960624_1960993_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88767.1|1963970_1964162_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88768.1|1964498_1965305_-	EAL domain-containing protein	NA	NA	NA	NA	NA
AWO88769.1|1965579_1966386_+	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.4e-05
AWO88770.1|1967899_1968631_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
AWO88771.1|1968810_1973952_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88772.1|1974686_1974944_-	WGR domain-containing protein	NA	NA	NA	NA	NA
AWO88773.1|1975513_1975735_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88774.1|1976259_1976604_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88775.1|1977154_1977511_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
AWO88776.1|1977564_1979112_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.6	2.1e-84
AWO88777.1|1979325_1980624_-	conjugal transfer protein	NA	NA	NA	NA	NA
AWO88778.1|1980597_1981662_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	1991819	2056180	9269701	transposase	Mycobacterium_phage(28.57%)	59	NA	NA
AWO88782.1|1991819_1992551_-|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
AWO88783.1|1993852_1995160_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.6e-94
AWO88784.1|1995957_1996347_-	response regulator	NA	NA	NA	NA	NA
AWO88785.1|1996428_1997112_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AWO88786.1|1997108_1999778_-	nodulation protein V	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
AWO88787.1|2000656_2001721_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWO95046.1|2002678_2003995_-	C4-dicarboxylate transporter 1	NA	NA	NA	NA	NA
AWO95047.1|2005102_2005714_+	molybdenum ABC transporter permease	NA	NA	NA	NA	NA
AWO95048.1|2006359_2007451_+	uptake hydrogenase small subunit	NA	NA	NA	NA	NA
AWO88788.1|2007464_2009255_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
AWO88789.1|2009217_2009952_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
AWO88790.1|2010586_2010877_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
AWO88791.1|2011753_2012305_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
AWO95049.1|2013208_2013493_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88792.1|2013485_2013827_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
AWO88793.1|2014675_2015804_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
AWO88794.1|2016088_2017834_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
AWO88795.1|2017821_2018973_+	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
AWO88796.1|2018969_2020016_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
AWO88797.1|2020400_2021513_+	alanine dehydrogenase	NA	NA	NA	NA	NA
AWO88798.1|2022051_2022246_+	ferredoxin	NA	NA	NA	NA	NA
AWO88799.1|2022389_2023454_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
AWO88800.1|2025265_2026768_+	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA	NA
AWO88801.1|2026833_2028390_+	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA	NA
AWO88802.1|2028482_2030126_+	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA	NA
AWO88803.1|2030135_2031545_+	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA	NA
AWO88804.1|2031541_2031937_+	nitrogen fixation protein NifX	NA	NA	NA	NA	NA
AWO88805.1|2031943_2032408_+	NifX-associated nitrogen fixation protein	NA	NA	NA	NA	NA
AWO88806.1|2032427_2032622_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88807.1|2032632_2032926_+	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
AWO88808.1|2033260_2033635_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88809.1|2033917_2034652_+	host specificity protein	NA	NA	NA	NA	NA
AWO88810.1|2035250_2035634_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AWO88811.1|2035655_2036375_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88812.1|2036505_2036826_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
AWO88813.1|2037149_2038331_+	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	37.9	1.1e-35
AWO88814.1|2038327_2038552_+	putative nitrogen fixation protein NifT	NA	NA	NA	NA	NA
AWO88815.1|2038990_2039212_+	hypothetical protein	NA	NA	NA	NA	NA
AWO95050.1|2039299_2040799_+	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA	NA
AWO88816.1|2040809_2041034_+	ferredoxin-like protein in nif region	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	47.7	2.0e-07
AWO88817.1|2041035_2041599_+	nitrogen fixation protein NifZ	NA	NA	NA	NA	NA
AWO88818.1|2041851_2042211_+	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
AWO88819.1|2042244_2042589_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88820.1|2043307_2043655_+	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA	NA
AWO88821.1|2044060_2044651_-	OmpW family protein	NA	NA	NA	NA	NA
AWO88822.1|2045013_2045439_-	arsenate reductase family protein	NA	NA	NA	NA	NA
AWO88823.1|2045456_2045825_+	hypothetical protein	NA	NA	NA	NA	NA
AWO95051.1|2046006_2046891_+	nitrogenase iron protein	NA	NA	NA	NA	NA
AWO88824.1|2046994_2047813_+	nitrogen fixation protein NifQ	NA	NA	NA	NA	NA
AWO88825.1|2047963_2048227_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88826.1|2048467_2048809_+	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA	NA
AWO88827.1|2048944_2049154_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88828.1|2049759_2050869_+	protein FixB	NA	NA	NA	NA	NA
AWO88829.1|2050880_2052188_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AWO95052.1|2052226_2052523_+	ferredoxin family protein	NA	NA	NA	NA	NA
AWO88830.1|2052734_2053283_-	alkyl hydroperoxide reductase AhpD	NA	NA	NA	NA	NA
AWO88831.1|2053289_2053844_-	peroxiredoxin	NA	NA	NA	NA	NA
AWO88832.1|2053795_2054752_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88833.1|2054872_2056180_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.6e-94
>prophage 5
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	2076977	2102147	9269701	transposase	Acidithiobacillus_phage(66.67%)	25	NA	NA
AWO88854.1|2076977_2078042_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
AWO88855.1|2078612_2078816_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88856.1|2078969_2079236_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88857.1|2079181_2079685_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88858.1|2079802_2080562_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWO95054.1|2080801_2081515_-	nodulation protein NolW	NA	NA	NA	NA	NA
AWO88859.1|2081664_2082177_+	nodulation protein NolB	NA	NA	NA	NA	NA
AWO88860.1|2082185_2083049_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AWO88861.1|2083060_2083699_+	nodulation protein NolU	NA	NA	NA	NA	NA
AWO88862.1|2083695_2084316_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AWO88863.1|2084312_2085668_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AWO88864.1|2085643_2086180_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88865.1|2086176_2087298_+	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AWO88866.1|2087290_2087956_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AWO88867.1|2087958_2088234_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AWO88868.1|2088244_2089066_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AWO88869.1|2089062_2090100_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AWO88870.1|2092634_2093723_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWO95055.1|2094108_2094330_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88871.1|2094430_2095495_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWO88872.1|2096498_2096900_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88873.1|2097734_2097941_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88874.1|2098070_2099405_-|transposase	IS5-like element ISBj2_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.6	2.1e-40
AWO88875.1|2099324_2099948_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88876.1|2101415_2102147_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	49.7	1.4e-46
>prophage 6
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	2151752	2238431	9269701	transposase,protease	Paenibacillus_phage(28.57%)	59	NA	NA
AWO88911.1|2151752_2152513_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWO88912.1|2152756_2154211_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
AWO88913.1|2154895_2155171_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88914.1|2155198_2155477_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88915.1|2155508_2155700_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88916.1|2155745_2156003_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88917.1|2156916_2157348_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88918.1|2157693_2159079_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWO88919.1|2159148_2160111_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AWO88920.1|2160123_2160984_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AWO88921.1|2160980_2161922_+	ribokinase	NA	NA	NA	NA	NA
AWO88922.1|2161918_2162689_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AWO88923.1|2162681_2163509_+	HAD family hydrolase	NA	NA	NA	NA	NA
AWO88924.1|2163508_2164621_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	36.5	2.3e-24
AWO88925.1|2164574_2166434_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AWO88926.1|2166438_2167152_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88927.1|2167456_2167642_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88928.1|2167744_2168914_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88929.1|2168906_2169767_+	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA	NA
AWO88930.1|2169763_2171539_+	FAD-binding protein	NA	A0A2P0ZL82	Lactobacillus_phage	26.9	7.5e-25
AWO88931.1|2172701_2172896_+	transcriptional regulator	NA	NA	NA	NA	NA
AWO88932.1|2173387_2174251_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWO88933.1|2174247_2175468_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWO88934.1|2175467_2176544_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AWO88935.1|2176530_2177265_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.8	4.8e-10
AWO88936.1|2177257_2177953_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	27.0	3.5e-10
AWO88937.1|2177993_2179286_+	hypothetical protein	NA	NA	NA	NA	NA
AWO95060.1|2179437_2180655_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWO95061.1|2180714_2181497_-	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA	NA
AWO88938.1|2181797_2181977_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88939.1|2182210_2183536_+	MFS transporter	NA	NA	NA	NA	NA
AWO88940.1|2183770_2186371_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88941.1|2186535_2187627_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AWO88942.1|2189340_2190489_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AWO88943.1|2190660_2191590_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
AWO88944.1|2193770_2194673_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AWO88945.1|2194669_2195356_-	HAD family hydrolase	NA	NA	NA	NA	NA
AWO88946.1|2198232_2199507_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AWO95062.1|2200007_2201762_+	nodulation protein NodU	NA	A0A1B1IVF2	uncultured_Mediterranean_phage	32.6	1.4e-23
AWO88947.1|2202783_2203683_+|protease	serine protease	protease	NA	NA	NA	NA
AWO88948.1|2203517_2203955_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88949.1|2203980_2205141_+|protease	serine protease	protease	NA	NA	NA	NA
AWO88950.1|2205142_2207242_+|protease	serine protease	protease	NA	NA	NA	NA
AWO88951.1|2207280_2210643_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88952.1|2210702_2212964_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88953.1|2213068_2216554_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88954.1|2216454_2222880_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88955.1|2222898_2224206_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88956.1|2224422_2225553_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88957.1|2225613_2228415_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88958.1|2229128_2229710_-	HipA domain-containing protein	NA	NA	NA	NA	NA
AWO88959.1|2229546_2230422_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AWO88960.1|2230418_2230712_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWO88961.1|2231841_2233257_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88962.1|2233282_2233624_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88963.1|2234212_2234971_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
AWO95063.1|2235263_2235512_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88964.1|2235619_2236966_-	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA	NA
AWO88965.1|2237366_2238431_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	2251205	2319280	9269701	transposase	Paenibacillus_phage(33.33%)	44	NA	NA
AWO88973.1|2251205_2252075_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
AWO88974.1|2252271_2253132_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
AWO88975.1|2253289_2254135_-	KilA-N domain-containing protein	NA	NA	NA	NA	NA
AWO88976.1|2254293_2254671_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88977.1|2254717_2255302_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88978.1|2255313_2255778_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88979.1|2256001_2256592_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88980.1|2256584_2257610_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AWO88981.1|2258220_2258865_+	transcriptional regulator	NA	NA	NA	NA	NA
AWO88982.1|2260129_2261704_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88983.1|2261686_2262109_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88984.1|2262105_2262348_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88985.1|2263177_2266495_-	HD domain-containing protein	NA	NA	NA	NA	NA
AWO88986.1|2268162_2268357_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88987.1|2269455_2270196_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88988.1|2270444_2271944_+	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
AWO88989.1|2271963_2272764_+	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA	NA
AWO95064.1|2273021_2273813_-	hemolysin activation protein	NA	NA	NA	NA	NA
AWO88990.1|2275442_2275655_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AWO88991.1|2276492_2276720_-	hypothetical protein	NA	NA	NA	NA	NA
AWO88992.1|2277920_2278226_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88993.1|2278225_2278609_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88994.1|2278461_2279946_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88995.1|2279938_2280988_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88996.1|2281021_2282329_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	1.6e-93
AWO88997.1|2282386_2282824_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88998.1|2282826_2283345_+	hypothetical protein	NA	NA	NA	NA	NA
AWO88999.1|2283798_2283999_-	hypothetical protein	NA	NA	NA	NA	NA
AWO89000.1|2288628_2290752_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	31.1	5.3e-41
AWO89001.1|2291492_2291699_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.1	1.5e-09
AWO89002.1|2292861_2293884_-	MFS transporter	NA	NA	NA	NA	NA
AWO95065.1|2295376_2296843_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
AWO89003.1|2298253_2299603_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
AWO89004.1|2299704_2300769_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWO89005.1|2300797_2301557_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
AWO89006.1|2306951_2307185_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
AWO89007.1|2307889_2308252_+	hypothetical protein	NA	NA	NA	NA	NA
AWO89008.1|2308167_2308476_+	hypothetical protein	NA	NA	NA	NA	NA
AWO89009.1|2312367_2312820_-	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	6.6e-10
AWO89010.1|2312818_2313073_+	hypothetical protein	NA	NA	NA	NA	NA
AWO89011.1|2314276_2314537_+	hypothetical protein	NA	NA	NA	NA	NA
AWO89012.1|2314549_2314648_+	hypothetical protein	NA	NA	NA	NA	NA
AWO89013.1|2316183_2317248_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
AWO89014.1|2318521_2319280_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
>prophage 8
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	5478928	5489125	9269701	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
AWO91676.1|5478928_5480329_-	peptidoglycan-binding LysM	NA	Q8SBN9	Clostridium_phage	42.7	4.9e-19
AWO91677.1|5480438_5481089_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	1.3e-27
AWO91678.1|5481330_5481702_+	response regulator	NA	NA	NA	NA	NA
AWO91679.1|5481705_5482557_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.6	2.7e-36
AWO91680.1|5482661_5483024_-	hypothetical protein	NA	NA	NA	NA	NA
AWO91681.1|5483118_5484450_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.9	1.5e-97
AWO91682.1|5484660_5485473_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	4.2e-55
AWO91683.1|5485469_5485997_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AWO91684.1|5486086_5486320_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
AWO91685.1|5486486_5487260_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	4.1e-44
AWO91686.1|5487260_5488100_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	1.1e-31
AWO91687.1|5488096_5489125_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.2	1.0e-21
>prophage 9
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	5768697	5777940	9269701	capsid,terminase,tail,head,portal,protease	Pseudomonas_phage(28.57%)	15	NA	NA
AWO91924.1|5768697_5769933_+|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	33.2	9.5e-43
AWO91925.1|5769932_5770598_+	hypothetical protein	NA	C7BGD3	Burkholderia_phage	30.3	6.7e-11
AWO95264.1|5770600_5770921_+	gene transfer agent family protein	NA	NA	NA	NA	NA
AWO91926.1|5770917_5771160_+	hypothetical protein	NA	NA	NA	NA	NA
AWO91927.1|5771160_5771658_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	39.0	8.0e-17
AWO91928.1|5771676_5772810_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	32.2	5.1e-35
AWO91929.1|5772822_5773407_+	hypothetical protein	NA	NA	NA	NA	NA
AWO91930.1|5773406_5773736_+	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	58.4	5.1e-20
AWO91931.1|5773740_5774181_+	hypothetical protein	NA	NA	NA	NA	NA
AWO91932.1|5774198_5774486_+	hypothetical protein	NA	NA	NA	NA	NA
AWO91933.1|5774487_5774904_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
AWO91934.1|5774905_5775223_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
AWO91935.1|5775237_5775918_-	hypothetical protein	NA	NA	NA	NA	NA
AWO91936.1|5775965_5776337_+|terminase	phage terminase small subunit P27 family	terminase	A0A142KAM7	Gordonia_phage	33.3	5.6e-07
AWO91937.1|5776314_5777940_+|terminase	terminase	terminase	D0R0D0	Streptococcus_phage	33.7	2.9e-71
>prophage 10
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	6633113	6640551	9269701		uncultured_virus(33.33%)	9	NA	NA
AWO92717.1|6633113_6633428_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	57.6	4.7e-23
AWO92718.1|6633476_6635099_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.2	6.8e-174
AWO95312.1|6635301_6635646_+	hypothetical protein	NA	NA	NA	NA	NA
AWO92719.1|6635664_6636072_+	hypothetical protein	NA	NA	NA	NA	NA
AWO92720.1|6636238_6636697_+	heat-shock protein HspA	NA	E3SM62	Prochlorococcus_phage	37.1	1.5e-17
AWO95313.1|6636863_6637790_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	33.8	2.3e-33
AWO92721.1|6638316_6638778_+	heat-shock protein HspB	NA	A0A1B1IW69	uncultured_Mediterranean_phage	39.4	3.7e-24
AWO92722.1|6638862_6639363_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
AWO92723.1|6639435_6640551_+	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	26.4	2.9e-22
>prophage 11
CP029603	Bradyrhizobium diazoefficiens strain XF7 chromosome, complete genome	9269701	9175402	9201134	9269701	transposase	Paenibacillus_phage(25.0%)	21	NA	NA
AWO94858.1|9175402_9176512_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
AWO94859.1|9176522_9177287_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
AWO94860.1|9177845_9178910_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AWO94861.1|9179167_9179794_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
AWO94862.1|9180016_9180625_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AWO94863.1|9180757_9181432_+	L,D-transpeptidase	NA	NA	NA	NA	NA
AWO94864.1|9181536_9182415_+	KR domain-containing protein	NA	NA	NA	NA	NA
AWO94865.1|9182411_9183260_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AWO94866.1|9183272_9183896_+	VOC family protein	NA	NA	NA	NA	NA
AWO94867.1|9184015_9184468_+	hypothetical protein	NA	NA	NA	NA	NA
AWO94868.1|9184931_9185285_-	hypothetical protein	NA	NA	NA	NA	NA
AWO94869.1|9186918_9187203_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWO94870.1|9187527_9187857_+|transposase	transposase	transposase	NA	NA	NA	NA
AWO94871.1|9187876_9188761_-	hypothetical protein	NA	NA	NA	NA	NA
AWO94872.1|9189227_9189893_+	hypothetical protein	NA	NA	NA	NA	NA
AWO94873.1|9191007_9192081_+	hypothetical protein	NA	NA	NA	NA	NA
AWO94874.1|9194555_9195887_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
AWO94875.1|9197098_9197767_+	chromosome partitioning protein ParA	NA	A2I303	Vibrio_virus	32.7	1.5e-10
AWO94876.1|9197729_9198767_+	hypothetical protein	NA	NA	NA	NA	NA
AWO94877.1|9198771_9199635_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
AWO94878.1|9199634_9201134_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
