assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003173695.1_ASM317369v1	CP029544	Lactobacillus helsingborgensis strain ESL0183 chromosome, complete genome	1	59655-59738	1	CRISPRCasFinder	no		cas9,cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	Orphan	TATTGTTTAAAAATAAGACGATA	23	0	0	NA	NA	NA	1	1	Orphan	cas9,cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	NA|214aa|up_7|CP029544.1_50994_51636_+,NA|254aa|up_6|CP029544.1_52415_53177_+,NA|91aa|up_0|CP029544.1_59312_59585_-,NA	NA|533aa|up_9|CP029544.1_48681_50280_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|96aa|up_8|CP029544.1_50260_50548_+	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087)	NA|214aa|up_7|CP029544.1_50994_51636_+	NA	NA|254aa|up_6|CP029544.1_52415_53177_+	NA	NA|231aa|up_5|CP029544.1_53192_53885_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|551aa|up_4|CP029544.1_54158_55811_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|244aa|up_3|CP029544.1_55807_56539_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|660aa|up_2|CP029544.1_56747_58727_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|159aa|up_1|CP029544.1_58809_59286_-	pfam04074, DUF386, Domain of unknown function (DUF386)	NA|91aa|up_0|CP029544.1_59312_59585_-	NA	NA|438aa|down_0|CP029544.1_59796_61110_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|595aa|down_1|CP029544.1_61140_62925_-	pfam06506, PrpR_N, Propionate catabolism activator	NA|424aa|down_2|CP029544.1_63018_64290_+	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|382aa|down_3|CP029544.1_64268_65414_+	pfam13088, BNR_2, BNR repeat-like domain	NA|385aa|down_4|CP029544.1_65421_66576_+	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like	NA|301aa|down_5|CP029544.1_66598_67501_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|334aa|down_6|CP029544.1_67548_68550_+	PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA|231aa|down_7|CP029544.1_68862_69555_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|247aa|down_8|CP029544.1_69658_70399_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|138aa|down_9|CP029544.1_70409_70823_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
GCA_003173695.1_ASM317369v1	CP029544	Lactobacillus helsingborgensis strain ESL0183 chromosome, complete genome	2	358144-358773	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2,DEDDh	cas9,cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	Type II-C,Type II-A,Type II-B	GTTTTAGATGGTTGTTAAATTGATGAT,GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC,GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	27,36,36	0	0	NA	NA	NA:NA:NA	8,8,9	9	TypeII-C,TypeII-A,TypeII-B	cas9,cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	NA,NA|274aa|down_6|CP029544.1_365232_366054_+	NA|280aa|up_9|CP029544.1_345788_346628_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|276aa|up_8|CP029544.1_346624_347452_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|235aa|up_7|CP029544.1_347452_348157_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|422aa|up_6|CP029544.1_348178_349444_+	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|314aa|up_5|CP029544.1_349599_350541_-	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|303aa|up_4|CP029544.1_350733_351642_+	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	cas9|1401aa|up_3|CP029544.1_351809_356012_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|304aa|up_2|CP029544.1_356262_357174_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|CP029544.1_357151_357457_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|223aa|up_0|CP029544.1_357453_358122_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|418aa|down_0|CP029544.1_358808_360062_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|416aa|down_1|CP029544.1_360391_361639_-	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	NA|305aa|down_2|CP029544.1_362083_362998_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|248aa|down_3|CP029544.1_363159_363903_+	pfam13596, PAS_10, PAS domain	NA|150aa|down_4|CP029544.1_364121_364571_+	pfam11694, DUF3290, Protein of unknown function (DUF3290)	NA|212aa|down_5|CP029544.1_364583_365219_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|274aa|down_6|CP029544.1_365232_366054_+	NA	DEDDh|318aa|down_7|CP029544.1_366064_367018_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|292aa|down_8|CP029544.1_367158_368034_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|362aa|down_9|CP029544.1_368355_369441_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
GCA_003173695.1_ASM317369v1	CP029544	Lactobacillus helsingborgensis strain ESL0183 chromosome, complete genome	3	1053720-1054283	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		cas9,cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	Orphan	GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC,GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC,GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	6,7,8	8	Orphan	cas9,cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	NA|277aa|up_6|CP029544.1_1044835_1045666_+,NA|229aa|up_5|CP029544.1_1046111_1046798_-,NA|343aa|up_4|CP029544.1_1047421_1048450_-,NA	NA|236aa|up_9|CP029544.1_1042356_1043064_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|136aa|up_8|CP029544.1_1043218_1043626_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|124aa|up_7|CP029544.1_1043766_1044138_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|277aa|up_6|CP029544.1_1044835_1045666_+	NA	NA|229aa|up_5|CP029544.1_1046111_1046798_-	NA	NA|343aa|up_4|CP029544.1_1047421_1048450_-	NA	NA|195aa|up_3|CP029544.1_1048593_1049178_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|518aa|up_2|CP029544.1_1049255_1050809_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|277aa|up_1|CP029544.1_1051109_1051940_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|429aa|up_0|CP029544.1_1052183_1053470_+	PRK00077, eno, enolase; Provisional	NA|111aa|down_0|CP029544.1_1054498_1054831_-	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown]	NA|758aa|down_1|CP029544.1_1055048_1057322_+	cd02076, P-type_ATPase_H, plant and fungal plasma membrane H(+)-ATPases, and related bacterial and archaeal putative H(+)-ATPases	NA|173aa|down_2|CP029544.1_1057757_1058276_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|314aa|down_3|CP029544.1_1058507_1059449_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|176aa|down_4|CP029544.1_1059918_1060446_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|759aa|down_5|CP029544.1_1060546_1062823_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|611aa|down_6|CP029544.1_1062864_1064697_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|530aa|down_7|CP029544.1_1064798_1066388_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|479aa|down_8|CP029544.1_1066540_1067977_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|381aa|down_9|CP029544.1_1068204_1069347_-	PRK14276, PRK14276, chaperone protein DnaJ; Provisional
