The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029482	Pseudomonas sp. 31-12 chromosome, complete genome	6730253	1475015	1541598	6730253	plate,lysis,holin,tail,tRNA	Pseudomonas_phage(50.0%)	65	NA	NA
AWM90538.1|1475015_1475834_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	28.0	4.6e-09
AWM90539.1|1475923_1476328_-	Fe-S metabolism protein SufE	NA	NA	NA	NA	NA
AWM90540.1|1476324_1477530_-	cysteine desulfurase CsdA	NA	Q2XUY6	environmental_halophage	36.1	2.4e-67
AWM90541.1|1477715_1478750_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AWM90542.1|1478783_1479146_-	ArsC family reductase	NA	NA	NA	NA	NA
AWM90543.1|1479615_1480362_-	peptidase M12	NA	NA	NA	NA	NA
AWM90544.1|1480473_1481121_-	hypothetical protein	NA	NA	NA	NA	NA
AWM90545.1|1481491_1482691_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
AWM90546.1|1482784_1485487_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
AWM90547.1|1485537_1486320_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AWM90548.1|1486693_1487431_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AWM90549.1|1487622_1488486_+	elongation factor Ts	NA	NA	NA	NA	NA
AWM90550.1|1488694_1489438_+	UMP kinase	NA	NA	NA	NA	NA
AWM90551.1|1489434_1489992_+	ribosome recycling factor	NA	NA	NA	NA	NA
AWM90552.1|1490005_1490761_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	38.1	1.1e-17
AWM90553.1|1490760_1491567_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AWM90554.1|1491563_1492754_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AWM90555.1|1492807_1494160_+	zinc metallopeptidase RseP	NA	NA	NA	NA	NA
AWM90556.1|1494234_1496625_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AWM90557.1|1496670_1497174_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
AWM90558.1|1497177_1498233_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AWM90559.1|1498341_1498782_+	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AWM90560.1|1498778_1499555_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AWM90561.1|1499557_1500688_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AWM90562.1|1500699_1501326_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.7	5.7e-28
AWM90563.1|1501402_1504924_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	36.7	8.6e-198
AWM90564.1|1505063_1506011_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
AWM90565.1|1506142_1507471_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	M1I2W1	Paramecium_bursaria_Chlorella_virus	27.1	2.6e-06
AWM90566.1|1507745_1509377_+	CTP synthetase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.3	1.8e-158
AWM90567.1|1509382_1510228_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.8	9.4e-50
AWM90568.1|1510384_1511674_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.9	3.7e-138
AWM90569.1|1511846_1512125_+	cell division protein FtsB	NA	NA	NA	NA	NA
AWM90570.1|1512121_1512829_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AWM90571.1|1512965_1513862_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AWM90572.1|1513968_1515081_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.0	4.4e-31
AWM90573.1|1515089_1515935_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
AWM90574.1|1515978_1516452_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AWM90575.1|1516448_1517507_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
AWM90576.1|1517494_1518244_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.0	1.2e-67
AWM90577.1|1518243_1518921_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.1	8.0e-44
AWM90578.1|1519132_1519990_+	peptigoglycan-binding protein LysM	NA	A0A0S2SXL7	Bacillus_phage	33.3	8.4e-06
AWM90579.1|1520095_1521103_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	6.6e-34
AWM90580.1|1521576_1521900_-	ferredoxin	NA	NA	NA	NA	NA
AWM90581.1|1522041_1524621_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	24.2	3.1e-27
AWM95107.1|1524821_1525556_+	transcriptional regulator	NA	B5TK58	Pseudomonas_phage	92.6	5.2e-129
AWM90582.1|1526052_1526400_+|holin	pyocin R2, holin	holin	B5TK61	Pseudomonas_phage	89.5	3.7e-53
AWM90583.1|1526532_1527117_+	hypothetical protein	NA	B5TK65	Pseudomonas_phage	78.9	1.0e-87
AWM90584.1|1527113_1527296_+	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	98.3	1.4e-27
AWM90585.1|1527295_1528792_+|tail	phage tail protein	tail	B5TK67	Pseudomonas_phage	92.0	4.0e-261
AWM90586.1|1528872_1529220_+|tail	phage tail protein	tail	B5TK68	Pseudomonas_phage	95.7	1.0e-58
AWM90587.1|1529216_1529513_+	ArsR family transcriptional regulator	NA	B5TK69	Pseudomonas_phage	90.8	8.1e-41
AWM90588.1|1529643_1531329_+|tail	phage tail protein	tail	B5TK70	Pseudomonas_phage	66.9	1.5e-86
AWM90589.1|1531315_1532551_+	hydroxyacid dehydrogenase	NA	B5TK71	Pseudomonas_phage	70.9	2.5e-160
AWM90590.1|1532553_1533597_+|plate	baseplate protein	plate	B5TK72	Pseudomonas_phage	77.7	5.6e-153
AWM90591.1|1533529_1533739_-	hypothetical protein	NA	NA	NA	NA	NA
AWM90592.1|1533778_1534288_+|plate	phage baseplate assembly protein V	plate	B5TK73	Pseudomonas_phage	89.9	3.1e-80
AWM90593.1|1534287_1534686_+	hypothetical protein	NA	B5TK74	Pseudomonas_phage	96.2	6.5e-70
AWM90594.1|1534675_1535716_+|plate	baseplate J protein	plate	B5TK75	Pseudomonas_phage	86.4	1.7e-162
AWM90595.1|1535706_1536306_+|tail	phage tail protein	tail	B5TK76	Pseudomonas_phage	90.5	1.0e-103
AWM90596.1|1537296_1537518_+	hypothetical protein	NA	NA	NA	NA	NA
AWM90597.1|1538194_1538677_+|tail	phage tail protein	tail	A0A291LAV4	Bordetella_phage	44.9	1.4e-21
AWM90598.1|1538799_1539363_+	lysozyme	NA	B5TK83	Pseudomonas_phage	83.9	1.3e-87
AWM90599.1|1539344_1539881_+|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	75.3	3.2e-64
AWM95108.1|1539961_1540462_+	damage-inducible protein CinA	NA	B5TK85	Pseudomonas_phage	86.7	4.2e-74
AWM90600.1|1540545_1541598_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	60.0	3.5e-110
>prophage 2
CP029482	Pseudomonas sp. 31-12 chromosome, complete genome	6730253	2653182	2659447	6730253	tRNA	uncultured_Caudovirales_phage(83.33%)	8	NA	NA
AWM91563.1|2653182_2654463_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.6	1.7e-98
AWM91564.1|2654463_2655858_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
AWM91565.1|2655975_2656977_-	glutathione-dependent reductase	NA	NA	NA	NA	NA
AWM91566.1|2657067_2658069_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	84.5	3.3e-163
AWM91567.1|2658065_2658401_-	sulfurtransferase TusE	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	78.4	2.3e-44
AWM91568.1|2658397_2658691_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	72.7	4.0e-32
AWM91569.1|2658690_2659053_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	68.3	1.4e-39
AWM95138.1|2659054_2659447_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	81.4	1.3e-54
>prophage 3
CP029482	Pseudomonas sp. 31-12 chromosome, complete genome	6730253	3513512	3522939	6730253		Bacillus_phage(33.33%)	9	NA	NA
AWM92304.1|3513512_3514883_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.4	4.8e-19
AWM92305.1|3515193_3516753_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.9	3.2e-11
AWM92306.1|3517294_3517435_-	DUF2256 domain-containing protein	NA	NA	NA	NA	NA
AWM92307.1|3517431_3518970_-	cryptochrome/photolyase family protein	NA	A0A1V0SE91	Indivirus	28.0	2.3e-54
AWM92308.1|3518995_3519301_-	metal ABC transporter ATPase	NA	NA	NA	NA	NA
AWM92309.1|3519315_3520026_-	short-chain dehydrogenase	NA	Q56AQ6	Bacillus_thuringiensis_phage	39.3	3.3e-32
AWM92310.1|3520061_3520622_-	GTP cyclohydrolase I FolE	NA	A0A0P0HSD2	Acinetobacter_phage	60.3	8.4e-55
AWM92311.1|3520766_3521231_-	DUF393 domain-containing protein	NA	NA	NA	NA	NA
AWM92312.1|3521298_3522939_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.9	3.2e-22
>prophage 4
CP029482	Pseudomonas sp. 31-12 chromosome, complete genome	6730253	6340781	6398000	6730253	protease,holin	Tupanvirus(20.0%)	51	NA	NA
AWM94719.1|6340781_6341288_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
AWM94720.1|6341624_6342512_+	acyltransferase	NA	NA	NA	NA	NA
AWM94721.1|6342513_6343071_-	hypothetical protein	NA	NA	NA	NA	NA
AWM94722.1|6343386_6344586_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	26.7	3.9e-09
AWM94723.1|6344793_6345651_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AWM94724.1|6345846_6346479_-	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
AWM94725.1|6346608_6349626_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA	NA
AWM94726.1|6349622_6349952_-	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
AWM94727.1|6349966_6351217_-	sarcosine oxidase subunit beta	NA	NA	NA	NA	NA
AWM94728.1|6351240_6352494_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.7e-100
AWM94729.1|6352777_6353494_-	conjugal transfer protein TraX	NA	NA	NA	NA	NA
AWM94730.1|6353627_6354668_+	threonine aldolase	NA	NA	NA	NA	NA
AWM94731.1|6354932_6355757_+	short chain dehydrogenase	NA	NA	NA	NA	NA
AWM94732.1|6355980_6357081_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
AWM95287.1|6357110_6357308_+	protein GbcA	NA	NA	NA	NA	NA
AWM94733.1|6357364_6358660_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
AWM94734.1|6359342_6360512_-	hypothetical protein	NA	NA	NA	NA	NA
AWM94735.1|6360591_6361158_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AWM94736.1|6361302_6362073_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
AWM94737.1|6362088_6363309_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AWM94738.1|6363308_6365258_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
AWM94739.1|6365251_6365461_-	hypothetical protein	NA	NA	NA	NA	NA
AWM94740.1|6365478_6367539_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
AWM94741.1|6367554_6368085_-	hydrocarbon binding protein	NA	NA	NA	NA	NA
AWM94742.1|6368164_6369142_-	membrane dipeptidase	NA	NA	NA	NA	NA
AWM94743.1|6369166_6369358_+	hypothetical protein	NA	NA	NA	NA	NA
AWM94744.1|6369379_6369781_+	hypothetical protein	NA	NA	NA	NA	NA
AWM94745.1|6369785_6371024_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AWM94746.1|6371020_6371317_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWM94747.1|6371535_6371955_+	DUF3010 domain-containing protein	NA	NA	NA	NA	NA
AWM94748.1|6372277_6372496_-	hypothetical protein	NA	NA	NA	NA	NA
AWM94749.1|6372929_6374843_+	hypothetical protein	NA	NA	NA	NA	NA
AWM94750.1|6374901_6375852_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AWM94751.1|6376048_6376993_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWM94752.1|6377068_6377956_+	NADPH:quinone reductase	NA	NA	NA	NA	NA
AWM94753.1|6378166_6379132_+	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
AWM94754.1|6379355_6379832_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA	NA
AWM94755.1|6379846_6381007_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA	NA
AWM94756.1|6381394_6381658_+	hypothetical protein	NA	NA	NA	NA	NA
AWM94757.1|6381548_6381770_-	hypothetical protein	NA	NA	NA	NA	NA
AWM94758.1|6381783_6382887_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AWM94759.1|6383460_6384837_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
AWM94760.1|6385272_6386223_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
AWM94761.1|6386300_6387146_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
AWM94762.1|6387142_6388321_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	38.1	2.7e-26
AWM94763.1|6388518_6390525_-	beta-aspartyl-peptidase	NA	A0A2I7QNT1	Vibrio_phage	25.8	1.2e-18
AWM94764.1|6390847_6391441_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
AWM94765.1|6391550_6393023_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
AWM94766.1|6393239_6394943_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	29.7	8.5e-50
AWM94767.1|6395220_6396663_+	peptidase C69	NA	NA	NA	NA	NA
AWM94768.1|6396662_6398000_+|protease	Zn-dependent protease	protease	NA	NA	NA	NA
