The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028704	Escherichia coli strain VH1 chromosome, complete genome	4445870	1022531	1029670	4445870		Escherichia_phage(83.33%)	6	NA	NA
AWM68595.1|1022531_1023170_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
AWM68596.1|1023261_1024428_-	hypothetical protein	NA	A0A077SLJ7	Escherichia_phage	60.6	1.1e-120
AWM68597.1|1024424_1025333_-	oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	4.3e-117
AWM68598.1|1025528_1026296_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
AWM68599.1|1026346_1027003_-	serine/threonine protein phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	4.7e-49
AWM68600.1|1027108_1029670_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.4	8.6e-30
>prophage 2
CP028704	Escherichia coli strain VH1 chromosome, complete genome	4445870	1403534	1416005	4445870	integrase,transposase,tail	Enterobacteria_phage(50.0%)	16	1399844:1399860	1418015:1418031
1399844:1399860	attL	GGTTGTCGATACCAATA	NA	NA	NA	NA
AWM68933.1|1403534_1403735_-	transcriptional regulator	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
AWM68934.1|1403866_1404172_-	hypothetical protein	NA	U5P0J0	Shigella_phage	96.0	2.2e-49
AWM68935.1|1404171_1404534_-	hypothetical protein	NA	K7PH61	Enterobacteria_phage	99.1	2.0e-65
AWM68936.1|1404524_1405061_-	HD family hydrolase	NA	K7PKJ9	Enterobacteria_phage	98.9	3.7e-100
AWM68937.1|1405188_1406013_-	DUF2303 domain-containing protein	NA	K7PJQ6	Enterobacteria_phage	99.3	7.8e-150
AWM68938.1|1406078_1406441_-	hypothetical protein	NA	Q8SBF8	Shigella_phage	99.2	1.9e-60
AWM68939.1|1407163_1407658_+	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	98.1	1.2e-86
AWM68940.1|1407657_1407933_+	phage N-6-adenine-methyltransferase	NA	Q8SBE9	Shigella_phage	100.0	2.6e-49
AWM71765.1|1407982_1408501_+	hypothetical protein	NA	M1FN94	Enterobacteria_phage	68.8	4.6e-39
AWM68941.1|1408527_1408968_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	70.1	9.5e-54
AWM68942.1|1408939_1409284_-|tail	tail assembly chaperone	tail	Q9MCR5	Enterobacteria_phage	86.2	3.1e-44
AWM68943.1|1409582_1410914_-	hypothetical protein	NA	U5P0I5	Shigella_phage	36.7	6.8e-63
AWM68944.1|1411777_1412940_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.2	2.0e-50
AWM68945.1|1413088_1413451_-	glucose translocase	NA	U5P0S6	Shigella_phage	88.3	1.0e-53
AWM68946.1|1413603_1414761_-|integrase	integrase	integrase	A5VW56	Enterobacteria_phage	100.0	5.7e-223
AWM68947.1|1415072_1416005_-	hypothetical protein	NA	E7DYY8	Enterobacteria_phage	99.0	2.5e-165
1418015:1418031	attR	GGTTGTCGATACCAATA	NA	NA	NA	NA
>prophage 3
CP028704	Escherichia coli strain VH1 chromosome, complete genome	4445870	1665249	1674690	4445870		Enterobacteria_phage(85.71%)	10	NA	NA
AWM69171.1|1665249_1666176_+	ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
AWM69172.1|1666180_1666912_+	osmoprotectant uptake system permease	NA	NA	NA	NA	NA
AWM69173.1|1666892_1667000_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69174.1|1667059_1667791_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
AWM69175.1|1668012_1669698_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
AWM69176.1|1669694_1670414_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AWM69177.1|1670460_1670931_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
AWM69178.1|1670970_1671432_-	hypothetical protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
AWM69179.1|1671712_1673557_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	95.9	0.0e+00
AWM69180.1|1673553_1674690_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 4
CP028704	Escherichia coli strain VH1 chromosome, complete genome	4445870	2235609	2254819	4445870	tail,lysis	Enterobacteria_phage(42.86%)	33	NA	NA
AWM69706.1|2235609_2235765_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
AWM69707.1|2235931_2236339_-	transcriptional regulator	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
AWM69708.1|2236422_2236653_+	division inhibition gene dicB repressor	NA	NA	NA	NA	NA
AWM69709.1|2237143_2237266_+	plasmid mobilization protein	NA	NA	NA	NA	NA
AWM69710.1|2237534_2237867_-	protein FlxA	NA	NA	NA	NA	NA
AWM69711.1|2238069_2238375_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69712.1|2238399_2238639_+	antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
AWM69713.1|2238638_2238926_+	mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
AWM69714.1|2238997_2239153_+	protein HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
AWM69715.1|2239369_2239621_+	hypothetical protein	NA	NA	NA	NA	NA
AWM69716.1|2239687_2239966_+	hypothetical protein	NA	NA	NA	NA	NA
AWM69717.1|2239967_2241017_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
AWM69718.1|2241030_2241783_+	antitermination protein Q	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
AWM69719.1|2242204_2242417_-	cold-shock protein CspF	NA	NA	NA	NA	NA
AWM69720.1|2242717_2242933_+	cold-shock protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
AWM69721.1|2243686_2243902_+|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
AWM69722.1|2243906_2244218_+	DUF1327 domain-containing protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
AWM69723.1|2244214_2244748_+	lysozyme from lambdoid prophage Qin	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
AWM69724.1|2244744_2245242_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
AWM69725.1|2245604_2245817_+	cold-shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
AWM69726.1|2245827_2246016_+	cold-shock protein	NA	NA	NA	NA	NA
AWM69727.1|2246162_2246318_+	hypothetical protein	NA	NA	NA	NA	NA
AWM69728.1|2246489_2246663_+	protein GnsB	NA	NA	NA	NA	NA
AWM69729.1|2246814_2247225_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
AWM69730.1|2247282_2247516_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
AWM69731.1|2247663_2247765_+	hypothetical protein	NA	NA	NA	NA	NA
AWM69732.1|2247904_2248474_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	1.5e-91
AWM69733.1|2248424_2249387_+	short-chain fatty acid transporter	NA	K7PHC9	Enterobacteria_phage	72.7	4.5e-40
AWM69734.1|2249386_2249962_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.8	2.5e-102
AWM69735.1|2250059_2250650_-	DNA invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
AWM69736.1|2250966_2251200_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
AWM69737.1|2251986_2253270_+	MFS transporter	NA	NA	NA	NA	NA
AWM69738.1|2253358_2254819_+	D-mannonate oxidoreductase	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	4.3e-42
>prophage 5
CP028704	Escherichia coli strain VH1 chromosome, complete genome	4445870	2448156	2478486	4445870	integrase,tRNA,transposase,tail	Escherichia_phage(39.29%)	38	2445869:2445883	2477647:2477661
2445869:2445883	attL	CAGAAAAAAGCGCGC	NA	NA	NA	NA
AWM69895.1|2448156_2449290_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.1e-117
AWM69896.1|2449430_2449865_+	universal stress protein F	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
AWM69897.1|2450825_2451059_+	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
AWM69898.1|2451375_2451966_+	DNA invertase	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
AWM69899.1|2452063_2452639_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.8	2.5e-102
AWM69900.1|2452638_2456001_-|tail	side tail fiber protein	tail	X2KTY7	Enterobacteria_phage	36.4	8.1e-12
AWM71813.1|2456065_2456281_-	hypothetical protein	NA	Q687E7	Enterobacteria_phage	98.4	1.4e-29
AWM69901.1|2456323_2457304_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	99.1	8.9e-185
AWM71814.1|2457342_2457462_-	ABC transporter	NA	NA	NA	NA	NA
AWM69902.1|2457436_2457691_-	hypothetical protein	NA	A5LH44	Enterobacteria_phage	95.8	7.4e-35
AWM69903.1|2458761_2458962_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69904.1|2459069_2459429_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69905.1|2459409_2459673_-	hypothetical protein	NA	A0A0R6PD10	Moraxella_phage	56.1	6.3e-21
AWM69906.1|2459590_2459872_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69907.1|2459810_2461268_-	Trk system potassium uptake protein TrkG	NA	NA	NA	NA	NA
AWM69908.1|2461464_2461650_-	Spanin from lambdoid prophage Rac, outer membrane subunit	NA	K7PHU6	Enterobacteria_phage	98.2	2.8e-15
AWM69909.1|2462320_2463067_-	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	78.9	3.8e-111
AWM69910.1|2463942_2464365_-	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	95.0	1.5e-69
AWM69911.1|2464387_2464684_-	transcriptional regulator	NA	A0A0R6PH31	Moraxella_phage	44.9	9.6e-10
AWM69912.1|2464807_2465284_+	Rac prophage repressor	NA	A0A2D1GNH0	Pseudomonas_phage	53.4	2.2e-11
AWM69913.1|2465547_2465727_+	hypothetical protein	NA	NA	NA	NA	NA
AWM69914.1|2465737_2465893_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
AWM69915.1|2465889_2466378_-	superinfection exclusion protein B	NA	NA	NA	NA	NA
AWM69916.1|2466412_2466691_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69917.1|2466819_2467041_+	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	97.3	4.9e-35
AWM71815.1|2467040_2467211_+	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
AWM69918.1|2467285_2467561_+	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
AWM69919.1|2467662_2470263_+	exodeoxyribonuclease 8	NA	A0A0U2I1R6	Escherichia_phage	63.5	5.1e-248
AWM69920.1|2470255_2471065_+	DNA recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
AWM69921.1|2471121_2471316_+	restriction alleviation and modification enhancement protein	NA	A0A0U2QQP4	Escherichia_phage	96.9	5.8e-32
AWM69922.1|2471308_2471518_+	double-strand break reduction protein	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
AWM69923.1|2471596_2471812_+	hypothetical protein	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
AWM69924.1|2471813_2473049_+|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.8	5.5e-240
AWM69925.1|2473100_2474036_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
AWM69926.1|2474164_2475538_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
AWM69927.1|2475567_2475741_-	hypothetical protein	NA	NA	NA	NA	NA
AWM69928.1|2476015_2476999_-	zinc transporter ZntB	NA	NA	NA	NA	NA
AWM71816.1|2477253_2478486_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
2477647:2477661	attR	GCGCGCTTTTTTCTG	NA	NA	NA	NA
>prophage 6
CP028704	Escherichia coli strain VH1 chromosome, complete genome	4445870	3244047	3288410	4445870	terminase,capsid,lysis,integrase,protease,transposase	Enterobacteria_phage(57.69%)	54	3237972:3237986	3293069:3293083
3237972:3237986	attL	TGCGCCTGAACATCA	NA	NA	NA	NA
AWM70629.1|3244047_3245160_-|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
AWM70630.1|3245236_3245389_-	protein HokE	NA	NA	NA	NA	NA
AWM70631.1|3245680_3245830_-	hypothetical protein	NA	NA	NA	NA	NA
AWM70632.1|3245841_3246960_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
AWM70633.1|3247025_3247274_+	DUF1158 domain-containing protein	NA	NA	NA	NA	NA
AWM70634.1|3247338_3247707_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
AWM70635.1|3247800_3248454_+	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
AWM70636.1|3248561_3249809_+	miniconductance mechanosensitive channel YbdG	NA	NA	NA	NA	NA
AWM70637.1|3249889_3251266_-	phenylalanine transporter	NA	NA	NA	NA	NA
AWM70638.1|3251367_3254511_-	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	NA	S5VTK5	Leptospira_phage	22.1	2.2e-59
AWM70639.1|3254522_3255746_-	cation efflux system protein CusB	NA	NA	NA	NA	NA
AWM70640.1|3255761_3256094_-	cation efflux system protein CusF	NA	NA	NA	NA	NA
AWM70641.1|3256251_3257625_-	cation efflux system protein CusC	NA	NA	NA	NA	NA
AWM70642.1|3257579_3257735_-	copper transporter	NA	NA	NA	NA	NA
AWM70643.1|3257781_3258465_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.1	1.0e-30
AWM70644.1|3258454_3259897_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	26.2	3.0e-11
AWM70645.1|3260046_3262284_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA	NA
AWM70646.1|3262270_3265243_+	bacteriophage N4 adsorption protein A	NA	NA	NA	NA	NA
AWM70647.1|3265243_3266134_+	hypothetical protein	NA	NA	NA	NA	NA
AWM70648.1|3266047_3266260_-	hypothetical protein	NA	NA	NA	NA	NA
AWM70649.1|3266316_3267078_+	porin thermoregulatory protein EnvY	NA	NA	NA	NA	NA
AWM70650.1|3267071_3267188_+	hypothetical protein	NA	NA	NA	NA	NA
AWM70651.1|3267591_3268545_+|protease	protease 7	protease	NA	NA	NA	NA
AWM70652.1|3268794_3269544_-	transcriptional regulator	NA	NA	NA	NA	NA
AWM70653.1|3270446_3271073_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AWM70654.1|3271017_3271155_-|capsid	nucleocapsid protein	capsid	NA	NA	NA	NA
AWM70655.1|3271127_3271871_-|terminase	phage terminase large subunit family protein	terminase	K7PMH7	Enterobacteria_phage	93.1	4.1e-73
AWM70656.1|3271845_3272391_-	DNA-packaging protein NU1	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	4.0e-94
AWM70657.1|3272530_3272632_-	hypothetical protein	NA	NA	NA	NA	NA
AWM70658.1|3272779_3272974_+	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	100.0	8.7e-28
AWM70659.1|3273138_3273345_-	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
AWM70660.1|3273630_3274041_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	98.5	1.2e-71
AWM70661.1|3274331_3274625_+	lipoprotein bor	NA	A0A2R2X2B2	Escherichia_phage	97.9	5.7e-47
AWM70662.1|3274656_3275118_-|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	96.7	1.9e-73
AWM70663.1|3275114_3275612_-	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	98.2	1.1e-90
AWM70664.1|3275611_3275827_-|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
AWM70665.1|3276399_3277467_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	77.9	2.0e-150
AWM70666.1|3277471_3278488_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	100.0	4.4e-187
AWM70667.1|3278525_3278744_-	hypothetical protein	NA	Q38586	Enterobacteria_phage	70.2	1.1e-13
AWM70668.1|3278885_3279269_-	antitermination protein Q	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
AWM70669.1|3279354_3279495_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	1.1e-08
AWM70670.1|3279491_3279854_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	96.5	4.3e-60
AWM70671.1|3279850_3280141_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	93.8	3.3e-47
AWM70672.1|3280133_3280304_-	protein NinE from lambdoid prophage DLP12	NA	K7P7K0	Enterobacteria_phage	69.8	2.4e-13
AWM70673.1|3280303_3280759_-	hypothetical protein	NA	I6PD71	Cronobacter_phage	66.9	4.1e-60
AWM70674.1|3280755_3280857_-	hypothetical protein	NA	NA	NA	NA	NA
AWM70675.1|3280973_3281771_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AWM70676.1|3281780_3282332_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AWM70677.1|3282796_3284323_-	recombinase family protein	NA	Q3HQV4	Burkholderia_phage	27.8	7.9e-31
AWM70678.1|3284577_3284910_-	multidrug SMR transporter	NA	NA	NA	NA	NA
AWM70679.1|3285220_3286383_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
AWM70680.1|3286445_3286541_-	protein ren	NA	M1FPD5	Enterobacteria_phage	100.0	1.5e-09
AWM70681.1|3286863_3287127_+	hypothetical protein	NA	B6DZ61	Enterobacteria_phage	97.7	1.8e-44
AWM70682.1|3287246_3288410_+|integrase	integrase	integrase	A0A088CD23	Shigella_phage	86.6	8.9e-200
3293069:3293083	attR	TGATGTTCAGGCGCA	NA	NA	NA	NA
