The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	60167	111385	2902681	transposase	Streptococcus_phage(40.0%)	47	NA	NA
AWI95079.1|60167_60842_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
AWI95080.1|61038_62418_+	tetracycline efflux MFS transporter Tet(K)	NA	NA	NA	NA	NA
AWI95081.1|62603_63845_+	Plasmid recombination enzyme type 3	NA	NA	NA	NA	NA
AWI95082.1|65413_66088_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
AWI95083.1|66119_66761_+	hypothetical protein	NA	NA	NA	NA	NA
AWI97666.1|67037_67619_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95084.1|68125_68485_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95085.1|68691_69018_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AWI95086.1|69120_69219_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95087.1|69338_71273_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.1	1.1e-98
AWI95088.1|72344_73028_+	hypothetical protein	NA	NA	NA	NA	NA
AWI97667.1|73421_74084_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95089.1|74216_75581_+	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA	NA
AWI97668.1|76301_76598_+	DNA recombinase	NA	A0A2K5B2B2	Erysipelothrix_phage	91.8	4.6e-44
AWI95090.1|76598_77015_+	recombinase	NA	A0A2K5B2B3	Erysipelothrix_phage	98.6	1.2e-71
AWI97669.1|77034_78579_+	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	88.7	1.8e-256
AWI95091.1|78721_78946_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWI95092.1|78960_79830_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.3	2.0e-151
AWI95093.1|79810_80545_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
AWI95094.1|80577_81441_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
AWI95095.1|81484_82012_+	adenine phosphoribosyltransferase	NA	A0A1X9I6E2	Streptococcus_phage	100.0	1.9e-93
AWI95096.1|82143_82953_+	ANT(9) family aminoglycoside nucleotidyltransferase Spw	NA	NA	NA	NA	NA
AWI97670.1|83170_83422_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95097.1|83472_83931_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95098.1|85019_86504_+	ABC-F type ribosomal protection protein Lsa(E)	NA	A0A2H4UUX5	Bodo_saltans_virus	26.0	2.6e-26
AWI95099.1|86557_87361_+	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA	NA
AWI95100.1|89744_90860_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	38.3	5.9e-60
AWI95101.1|91127_92456_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AWI95102.1|92474_93542_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AWI95103.1|93680_93941_+	cytoplasmic protein	NA	NA	NA	NA	NA
AWI95104.1|93937_94696_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AWI95105.1|95377_95578_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95106.1|95800_97234_+	copper oxidase	NA	NA	NA	NA	NA
AWI95107.1|97253_97736_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95108.1|98002_98659_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95109.1|98834_99566_+	hypothetical protein	NA	A0A1P8CX59	Bacillus_phage	35.3	3.5e-37
AWI95110.1|99645_100971_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95111.1|101181_102282_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95112.1|102274_102643_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95113.1|102642_104286_+	DNA primase	NA	NA	NA	NA	NA
AWI95114.1|104511_106188_+	recombinase RecB	NA	A0A0S2SXR4	Bacillus_phage	28.8	2.8e-45
AWI95115.1|106293_106632_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95116.1|106727_107039_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95117.1|107056_107563_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
AWI95118.1|108020_109106_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.6	9.0e-13
AWI95119.1|109102_111001_+|transposase	transposase	transposase	NA	NA	NA	NA
AWI95120.1|111001_111385_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	410697	459693	2902681	holin,integrase,transposase,capsid,protease,terminase,head,portal,tail	Staphylococcus_phage(91.04%)	68	407342:407357	468246:468261
407342:407357	attL	ATTTTCTAATAAATGA	NA	NA	NA	NA
AWI95364.1|410697_411870_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI95365.1|412084_414022_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
AWI95366.1|414112_415318_-|integrase	site-specific integrase	integrase	Q4ZBP1	Staphylococcus_phage	99.8	1.9e-221
AWI95367.1|415443_416058_+	ATPase	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
AWI95368.1|416430_417015_-	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
AWI95369.1|417032_417494_-	toxin	NA	A0A2K9VBR7	Staphylococcus_phage	99.3	1.0e-82
AWI95370.1|417506_417821_-	XRE family transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
AWI95371.1|417972_418209_+	XRE family transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
AWI95372.1|418222_418999_+	transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
AWI95373.1|419217_419430_-	uracil-DNA glycosylase	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
AWI95374.1|419499_419697_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	96.9	5.0e-23
AWI95375.1|419683_420064_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	99.2	3.8e-67
AWI95376.1|420130_420376_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	98.8	2.5e-40
AWI95377.1|420434_420761_+	hypothetical protein	NA	A0A0H3U2S6	Staphylococcus_phage	98.1	2.4e-54
AWI95378.1|420775_420919_+	hypothetical protein	NA	Q4ZAL7	Staphylococcus_virus	100.0	1.9e-16
AWI95379.1|420908_421118_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
AWI95380.1|421173_421389_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
AWI95381.1|421413_421677_+	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
AWI95382.1|421689_421851_+	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
AWI95383.1|421929_422253_+	TrmB family transcriptional regulator	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
AWI95384.1|422267_422630_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	97.5	3.2e-55
AWI95385.1|422626_423793_+	DUF2800 domain-containing protein	NA	A0A2K9VBU5	Staphylococcus_phage	98.7	1.1e-218
AWI95386.1|423819_424374_+	DUF2815 domain-containing protein	NA	M9QRS1	Staphylococcus_phage	100.0	1.4e-99
AWI97683.1|424442_426395_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.4	0.0e+00
AWI95387.1|426407_426593_+	DUF3113 domain-containing protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
AWI95388.1|426592_426994_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
AWI95389.1|426993_427248_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	1.6e-42
AWI95390.1|427247_427496_+	hypothetical protein	NA	Q8SDR2	Staphylococcus_virus	96.3	1.3e-39
AWI95391.1|427509_427716_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
AWI95392.1|427718_428120_+	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	99.2	2.0e-71
AWI95393.1|428116_428464_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AWI95394.1|428460_428769_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	99.0	3.1e-51
AWI95395.1|428761_429010_+	hypothetical protein	NA	A0A0E3T8I2	Staphylococcus_phage	97.6	2.7e-37
AWI95396.1|429002_429539_+	dUTPase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
AWI95397.1|429575_429782_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AWI95398.1|429778_430165_+	hypothetical protein	NA	A0A0H3U465	Staphylococcus_phage	96.9	1.1e-61
AWI95399.1|430161_430314_+	transcriptional regulator	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
AWI95400.1|430381_430582_+	DUF1514 domain-containing protein	NA	Q9B0E8	Staphylococcus_virus	100.0	3.8e-26
AWI95401.1|430633_433081_+	hypothetical protein	NA	A7TWI4	Staphylococcus_phage	99.9	0.0e+00
AWI95402.1|433183_433288_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	97.1	1.8e-11
AWI97684.1|433421_433712_+	VRR-NUC domain-containing protein	NA	M1T308	Staphylococcus_phage	100.0	4.9e-51
AWI95403.1|433692_435060_+	DEAD/DEAH box helicase	NA	B7T0I5	Staphylococcus_virus	98.7	5.6e-262
AWI95404.1|435072_435510_+	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
AWI95405.1|435666_435981_+	HNH endonuclease	NA	A0A2I6PF37	Staphylococcus_phage	100.0	2.5e-56
AWI95406.1|436108_436414_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
AWI95407.1|436403_438095_+|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	98.8	0.0e+00
AWI95408.1|438099_439338_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
AWI95409.1|439321_440095_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.8	7.8e-136
AWI97685.1|440106_441270_+|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
AWI95410.1|441338_441617_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AWI95411.1|441628_441961_+	hypothetical protein	NA	M9QX19	Staphylococcus_phage	100.0	1.1e-57
AWI95412.1|441957_442359_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	100.0	1.1e-67
AWI95413.1|442359_442755_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	100.0	5.1e-67
AWI95414.1|442789_443431_+|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AWI95415.1|443522_443978_+|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AWI95416.1|444035_444386_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AWI95417.1|444427_444586_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AWI95418.1|444599_450800_+|tail	phage tail tape measure protein	tail	M9QQM6	Staphylococcus_phage	98.5	0.0e+00
AWI95419.1|450799_451624_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	99.6	7.0e-159
AWI95420.1|451632_453216_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	99.8	1.3e-307
AWI95421.1|453215_453506_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
AWI95422.1|453521_455432_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.8	0.0e+00
AWI95423.1|455431_456898_+	hypothetical protein	NA	A0A2I6PES7	Staphylococcus_phage	98.6	3.5e-270
AWI95424.1|456897_457287_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AWI95425.1|457279_457444_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
AWI95426.1|457489_457789_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AWI95427.1|457924_458227_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
AWI95428.1|458238_459693_+	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
468246:468261	attR	TCATTTATTAGAAAAT	NA	NA	NA	NA
>prophage 3
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	858880	868032	2902681	transposase	Hokovirus(14.29%)	11	NA	NA
AWI95786.1|858880_859936_-	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.2	2.1e-14
AWI95787.1|859935_860622_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AWI95788.1|860596_861070_-	DoxX family membrane protein	NA	NA	NA	NA	NA
AWI95789.1|861410_861851_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95790.1|862131_862716_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95791.1|862814_863528_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWI95792.1|863531_863951_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWI95793.1|863952_864621_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AWI95794.1|864776_865949_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI95795.1|866303_866897_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
AWI95796.1|866880_868032_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	880002	894318	2902681		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
AWI95806.1|880002_881061_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
AWI95807.1|881219_881762_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AWI97706.1|882062_882230_+	nitrogen fixation protein NifR	NA	NA	NA	NA	NA
AWI95808.1|882498_883416_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
AWI95809.1|883506_883614_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95810.1|883685_885191_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AWI95811.1|885252_885459_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95812.1|885530_886031_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
AWI95813.1|886050_886917_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AWI95814.1|887301_887451_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AWI95815.1|887718_888117_+	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AWI95816.1|888079_890185_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWI95817.1|890304_891276_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AWI95818.1|891317_891500_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95819.1|891645_892617_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
AWI95820.1|892603_893560_+	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
AWI95821.1|893556_894318_+	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1059025	1082250	2902681	integrase	Streptococcus_phage(94.74%)	25	1047482:1047499	1086525:1086542
1047482:1047499	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
AWI95981.1|1059025_1062679_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
AWI95982.1|1062844_1063747_+	FAA hydrolase family protein	NA	NA	NA	NA	NA
AWI95983.1|1064073_1064463_+	DUF1516 domain-containing protein	NA	NA	NA	NA	NA
AWI95984.1|1064727_1065945_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
AWI95985.1|1066026_1066230_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AWI95986.1|1066213_1066465_+	hypothetical protein	NA	NA	NA	NA	NA
AWI95987.1|1066690_1066921_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AWI95988.1|1066917_1067340_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AWI97710.1|1067568_1067640_-	hypothetical protein	NA	NA	NA	NA	NA
AWI95989.1|1067844_1068198_+	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AWI95990.1|1068257_1068443_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AWI95991.1|1068543_1070463_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
AWI95992.1|1070478_1070565_-	tetracycline resistance protein	NA	NA	NA	NA	NA
AWI95993.1|1070839_1071772_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
AWI95994.1|1071768_1072770_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AWI95995.1|1072766_1074944_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
AWI95996.1|1074946_1077394_-	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AWI95997.1|1077377_1077884_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AWI95998.1|1077858_1078356_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AWI95999.1|1078472_1078694_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AWI96000.1|1078736_1079942_-	Cro/Cl family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	99.8	8.2e-233
AWI96001.1|1079964_1080117_-	conjugal transfer protein	NA	NA	NA	NA	NA
AWI96002.1|1080119_1081505_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
AWI96003.1|1081533_1081920_-	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
AWI96004.1|1081935_1082250_-	conjugal transfer protein	NA	A0A1S5SF38	Streptococcus_phage	99.0	2.6e-53
1086525:1086542	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 6
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1093422	1151161	2902681	bacteriocin,holin,transposase,protease,tRNA	Planktothrix_phage(50.0%)	54	NA	NA
AWI96013.1|1093422_1094595_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI96014.1|1094824_1095259_+	MAP domain-containing protein	NA	NA	NA	NA	NA
AWI96015.1|1095515_1095701_-	DUF2929 domain-containing protein	NA	NA	NA	NA	NA
AWI96016.1|1095995_1096937_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AWI96017.1|1096948_1098193_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AWI96018.1|1098247_1098619_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
AWI96019.1|1098861_1099788_+	ABC transporter permease	NA	NA	NA	NA	NA
AWI96020.1|1099787_1100858_+	ABC transporter permease	NA	NA	NA	NA	NA
AWI96021.1|1100873_1101956_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
AWI96022.1|1101945_1102887_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	2.4e-22
AWI96023.1|1102905_1104561_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWI96024.1|1104730_1105666_+	ABC transporter permease	NA	NA	NA	NA	NA
AWI96025.1|1105655_1106675_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
AWI96026.1|1106687_1107770_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	5.4e-18
AWI96027.1|1107759_1108686_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.7	1.9e-19
AWI96028.1|1108713_1110336_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AWI96029.1|1110455_1111445_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AWI96030.1|1111739_1112135_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
AWI96031.1|1112505_1113225_+	adaptor protein MecA	NA	NA	NA	NA	NA
AWI96032.1|1113345_1114332_+	competence protein CoiA	NA	NA	NA	NA	NA
AWI96033.1|1114379_1116188_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
AWI96034.1|1116647_1117454_-	DsbA family protein	NA	NA	NA	NA	NA
AWI96035.1|1117476_1117842_-	globin	NA	NA	NA	NA	NA
AWI96036.1|1117945_1118539_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
AWI96037.1|1118724_1119072_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96038.1|1119088_1119724_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
AWI96039.1|1119740_1120550_+	NAD(+) kinase	NA	NA	NA	NA	NA
AWI96040.1|1120546_1121401_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AWI96041.1|1121421_1122807_+	magnesium transporter	NA	NA	NA	NA	NA
AWI96042.1|1122816_1124661_+	sodium:proton antiporter	NA	NA	NA	NA	NA
AWI96043.1|1124938_1125709_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AWI96044.1|1125905_1126991_-	AI-2E family transporter	NA	NA	NA	NA	NA
AWI96045.1|1127332_1128901_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
AWI96046.1|1129042_1129801_+	esterase family protein	NA	NA	NA	NA	NA
AWI96047.1|1129994_1130504_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96048.1|1130616_1131825_-	MFS transporter	NA	NA	NA	NA	NA
AWI96049.1|1131784_1132960_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA	NA
AWI96050.1|1133390_1134875_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
AWI96051.1|1134855_1135116_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96052.1|1135115_1136678_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
AWI97711.1|1136979_1137783_+	hypothetical protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
AWI96053.1|1138001_1140326_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	27.4	2.1e-11
AWI96054.1|1140342_1141701_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
AWI96055.1|1141839_1143351_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AWI96056.1|1143839_1144409_-	competence protein ComK	NA	NA	NA	NA	NA
AWI96057.1|1144618_1144837_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
AWI96058.1|1144917_1145904_-	lipoate--protein ligase	NA	NA	NA	NA	NA
AWI96059.1|1146102_1146279_+	DUF2187 domain-containing protein	NA	NA	NA	NA	NA
AWI96060.1|1146293_1146896_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AWI97712.1|1147195_1147273_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
AWI96061.1|1147907_1148192_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
AWI96062.1|1148235_1150200_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
AWI96063.1|1150202_1150523_+	YxeA family protein	NA	NA	NA	NA	NA
AWI96064.1|1150519_1151161_+|bacteriocin	bacteriocin ABC transporter ATP-binding protein	bacteriocin	G9BWD6	Planktothrix_phage	33.7	1.0e-19
>prophage 7
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1183583	1192056	2902681		Synechococcus_phage(33.33%)	9	NA	NA
AWI96096.1|1183583_1184066_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
AWI96097.1|1184052_1185177_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWI96098.1|1185180_1185885_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
AWI96099.1|1185884_1186148_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AWI96100.1|1186149_1186821_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AWI96101.1|1186813_1189003_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
AWI96102.1|1188981_1190466_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
AWI96103.1|1190458_1191487_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
AWI96104.1|1191489_1192056_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 8
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1390301	1456779	2902681	tRNA,protease,transposase	Staphylococcus_phage(29.41%)	58	NA	NA
AWI96299.1|1390301_1391588_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AWI96300.1|1391607_1393311_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
AWI97722.1|1393573_1397884_+	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
AWI96301.1|1397993_1398194_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96302.1|1398173_1398641_+	ribosome maturation factor	NA	NA	NA	NA	NA
AWI96303.1|1398661_1399837_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
AWI96304.1|1399857_1400142_+	DUF448 domain-containing protein	NA	NA	NA	NA	NA
AWI96305.1|1400138_1400456_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96306.1|1400460_1402578_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
AWI96307.1|1402963_1403314_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AWI96308.1|1403483_1404401_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
AWI96309.1|1404415_1405387_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
AWI96310.1|1405501_1405771_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AWI96311.1|1406140_1408237_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AWI96312.1|1408411_1408510_-	RNA-metabolising metallo-beta-lactamase	NA	NA	NA	NA	NA
AWI96313.1|1408472_1410146_+	ribonuclease J 2	NA	NA	NA	NA	NA
AWI97723.1|1410527_1412771_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
AWI96314.1|1412775_1413489_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AWI96315.1|1413519_1414785_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	27.0	1.1e-41
AWI96316.1|1414784_1416071_+	insulinase family protein	NA	M1NN74	Moumouvirus	24.1	1.1e-14
AWI96317.1|1416070_1416775_+	KR domain-containing protein	NA	NA	NA	NA	NA
AWI96318.1|1416879_1417707_+	DUF3388 domain-containing protein	NA	NA	NA	NA	NA
AWI96319.1|1417725_1418118_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AWI96320.1|1418151_1418730_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AWI96321.1|1418954_1420106_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AWI96322.1|1420270_1421314_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
AWI96323.1|1421667_1423227_+	ribonuclease Y	NA	NA	NA	NA	NA
AWI96324.1|1423524_1424697_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI96325.1|1424855_1425071_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96326.1|1425244_1426042_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA	NA
AWI96327.1|1426181_1427942_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA	NA
AWI96328.1|1427942_1428809_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA	NA
AWI96329.1|1428990_1429938_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.4	4.2e-184
AWI96330.1|1429976_1430270_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96331.1|1430403_1431948_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AWI96332.1|1431948_1432314_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96333.1|1432340_1432832_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
AWI96334.1|1433134_1435753_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	1.9e-40
AWI96335.1|1435765_1437775_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	5.3e-59
AWI96336.1|1437780_1438323_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
AWI96337.1|1438797_1439616_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
AWI96338.1|1439744_1441241_+	glycerol kinase	NA	NA	NA	NA	NA
AWI96339.1|1441398_1443072_+	aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AWI96340.1|1443221_1444136_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AWI96341.1|1444153_1445089_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AWI96342.1|1445103_1445337_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
AWI96343.1|1445558_1446035_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.6e-22
AWI96344.1|1446146_1447385_+	GTPase HflX	NA	NA	NA	NA	NA
AWI96345.1|1447403_1448642_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96346.1|1448885_1449254_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AWI96347.1|1449272_1450613_+	glutamine synthetase	NA	NA	NA	NA	NA
AWI96348.1|1451131_1451329_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
AWI97724.1|1452015_1452243_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
AWI96349.1|1452388_1453561_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI96350.1|1453643_1453973_+|transposase	transposase	transposase	NA	NA	NA	NA
AWI96351.1|1453959_1455348_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96352.1|1455390_1455588_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96353.1|1455606_1456779_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 9
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1737281	1745593	2902681	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
AWI96597.1|1737281_1738067_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AWI96598.1|1738192_1739083_-	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AWI96599.1|1739092_1740439_-	ATP-dependent helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AWI96600.1|1740552_1741653_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
AWI96601.1|1741655_1742333_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
AWI96602.1|1742463_1743570_-	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AWI96603.1|1743793_1745593_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 10
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1814906	1823946	2902681	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AWI96672.1|1814906_1815422_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
AWI96673.1|1815443_1817717_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
AWI96674.1|1817919_1820199_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AWI96675.1|1820473_1820734_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AWI96676.1|1820752_1821892_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AWI96677.1|1821914_1822940_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AWI96678.1|1822941_1823946_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	1957232	2005078	2902681	tRNA,protease,transposase	Staphylococcus_phage(91.89%)	48	NA	NA
AWI96794.1|1957232_1963781_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
AWI96795.1|1964104_1964416_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
AWI96796.1|1964437_1966855_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
AWI96797.1|1967142_1968324_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
AWI96798.1|1968433_1969387_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
AWI96799.1|1969383_1969947_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
AWI96800.1|1970065_1970467_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AWI96801.1|1971039_1971867_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AWI96802.1|1971869_1971989_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96803.1|1972000_1972192_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96804.1|1972100_1973102_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AWI96805.1|1973229_1973688_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
AWI96806.1|1973700_1974882_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
AWI96807.1|1974892_1975525_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AWI97740.1|1975531_1976563_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
AWI96808.1|1977055_1978558_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
AWI96809.1|1979200_1979515_+	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
AWI96810.1|1979514_1980807_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
AWI96811.1|1980893_1981748_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWI96812.1|1982023_1982248_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96813.1|1982446_1982917_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
AWI96814.1|1983029_1983473_+	competence protein ComK	NA	NA	NA	NA	NA
AWI96815.1|1983459_1983903_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	78.6	6.4e-50
AWI96816.1|1984200_1984836_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AWI96817.1|1985002_1985623_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AWI96818.1|1986185_1986899_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AWI96819.1|1987157_1987460_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96820.1|1987714_1988080_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
AWI96821.1|1988076_1988430_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
AWI96822.1|1988679_1989513_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
AWI96823.1|1989724_1990633_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
AWI96824.1|1990757_1991951_-	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AWI96825.1|1992322_1993915_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
AWI97741.1|1994211_1994958_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
AWI96826.1|1994962_1995436_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
AWI96827.1|1995501_1995759_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AWI96828.1|1995755_1996757_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
AWI96829.1|1996761_1998240_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
AWI97742.1|1998398_1998854_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
AWI96830.1|1999156_1999819_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
AWI96831.1|1999899_2000895_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
AWI96832.1|2000970_2001597_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
AWI96833.1|2001637_2001982_+	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
AWI96834.1|2002079_2002652_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
AWI96835.1|2002849_2003407_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
AWI96836.1|2003777_2003954_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96837.1|2003964_2004348_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96838.1|2004796_2005078_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
>prophage 12
CP029172	Staphylococcus aureus strain PTDrAP2 chromosome, complete genome	2902681	2096214	2136606	2902681	tRNA,protease,transposase	Staphylococcus_phage(33.33%)	36	NA	NA
AWI96918.1|2096214_2097642_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B	tRNA	NA	NA	NA	NA
AWI96919.1|2097654_2099112_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	tRNA	NA	NA	NA	NA
AWI96920.1|2099113_2099416_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AWI96921.1|2099782_2101321_+	sodium:proline symporter	NA	NA	NA	NA	NA
AWI96922.1|2101409_2102609_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
AWI96923.1|2102621_2104625_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	4.4e-114
AWI96924.1|2104628_2106821_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
AWI96925.1|2106817_2107510_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
AWI96926.1|2107681_2107984_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96927.1|2108092_2109388_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
AWI96928.1|2110236_2111403_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
AWI96929.1|2111433_2111757_+	staphostatin A	NA	NA	NA	NA	NA
AWI96930.1|2112049_2112223_-	NETI motif-containing protein	NA	NA	NA	NA	NA
AWI96931.1|2112203_2112806_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
AWI96932.1|2113075_2113897_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
AWI96933.1|2113889_2115359_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.7e-107
AWI96934.1|2115542_2116619_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
AWI96935.1|2116638_2117433_+	prephenate dehydratase	NA	NA	NA	NA	NA
AWI96936.1|2117504_2117612_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96937.1|2117622_2119185_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA	NA
AWI96938.1|2119389_2120487_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
AWI96939.1|2120858_2121419_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
AWI96940.1|2121471_2122401_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
AWI96941.1|2122593_2122767_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96942.1|2122818_2124198_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AWI96943.1|2124317_2125346_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96944.1|2125911_2127084_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI96945.1|2127137_2127518_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
AWI96946.1|2127507_2129265_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
AWI96947.1|2129371_2130217_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
AWI96948.1|2130477_2131650_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI96949.1|2132215_2133388_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
AWI97749.1|2133406_2133604_+	hypothetical protein	NA	NA	NA	NA	NA
AWI96950.1|2133646_2135035_-	hypothetical protein	NA	NA	NA	NA	NA
AWI96951.1|2135021_2135351_-|transposase	transposase	transposase	NA	NA	NA	NA
AWI96952.1|2135433_2136606_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
