assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003111705.1_ASM311170v1	CP029173	Methylobacterium sp. DM1 chromosome, complete genome	2	1157772-1157857	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,Cas9_archaeal	Orphan	GCCACCTTTCGGGATGATGCTCTA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,Cas9_archaeal	NA|94aa|up_5|CP029173.1_1153195_1153477_-,NA|128aa|up_4|CP029173.1_1153620_1154004_-,NA	NA|403aa|up_9|CP029173.1_1148936_1150145_-	PRK14708, PRK14708, flagellin; Provisional	NA|72aa|up_8|CP029173.1_1150808_1151024_-	pfam12244, DUF3606, Protein of unknown function (DUF3606)	NA|385aa|up_7|CP029173.1_1151121_1152276_-	COG4763, COG4763, Predicted membrane protein [Function unknown]	NA|197aa|up_6|CP029173.1_1152453_1153044_-	pfam08447, PAS_3, PAS fold	NA|94aa|up_5|CP029173.1_1153195_1153477_-	NA	NA|128aa|up_4|CP029173.1_1153620_1154004_-	NA	NA|143aa|up_3|CP029173.1_1154234_1154663_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|251aa|up_2|CP029173.1_1154670_1155423_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|209aa|up_1|CP029173.1_1155988_1156615_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|282aa|up_0|CP029173.1_1156856_1157702_-	pfam05853, BKACE, beta-keto acid cleavage enzyme	NA|626aa|down_0|CP029173.1_1159202_1161080_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|290aa|down_1|CP029173.1_1161300_1162170_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|274aa|down_2|CP029173.1_1162178_1163000_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|327aa|down_3|CP029173.1_1163013_1163994_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|247aa|down_4|CP029173.1_1164243_1164984_-	PRK05177, minC, septum formation inhibitor MinC	NA|253aa|down_5|CP029173.1_1165182_1165941_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|609aa|down_6|CP029173.1_1166243_1168070_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|563aa|down_7|CP029173.1_1168257_1169946_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|229aa|down_8|CP029173.1_1170320_1171007_+	PRK05177, minC, septum formation inhibitor MinC	NA|272aa|down_9|CP029173.1_1171019_1171835_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
GCA_003111705.1_ASM311170v1	CP029173	Methylobacterium sp. DM1 chromosome, complete genome	3	1702714-1702802	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,Cas9_archaeal	Orphan	GGTGGCCACCTTTCGGGACGATGCGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,Cas9_archaeal	NA|240aa|up_2|CP029173.1_1700117_1700837_-,NA|76aa|down_8|CP029173.1_1711137_1711365_-,NA|118aa|down_9|CP029173.1_1711385_1711739_-	NA|1769aa|up_9|CP029173.1_1687709_1693016_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|688aa|up_8|CP029173.1_1693071_1695135_+	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|107aa|up_7|CP029173.1_1695285_1695606_+	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE	NA|264aa|up_6|CP029173.1_1695615_1696407_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|216aa|up_5|CP029173.1_1696457_1697105_-	TIGR03784, marine_sortase, sortase, marine proteobacterial type	NA|728aa|up_4|CP029173.1_1697101_1699285_-	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein	NA|203aa|up_3|CP029173.1_1699518_1700127_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|240aa|up_2|CP029173.1_1700117_1700837_-	NA	NA|338aa|up_1|CP029173.1_1700901_1701915_-	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|222aa|up_0|CP029173.1_1701905_1702571_-	pfam06226, DUF1007, Protein of unknown function (DUF1007)	NA|667aa|down_0|CP029173.1_1703256_1705257_-	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|174aa|down_1|CP029173.1_1705315_1705837_-	PRK13254, PRK13254, cytochrome c maturation protein CcmE	NA|517aa|down_2|CP029173.1_1705997_1707548_-	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|472aa|down_3|CP029173.1_1707695_1709111_-	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG	NA|79aa|down_4|CP029173.1_1709203_1709440_+	pfam07704, PSK_trans_fac, Rv0623-like transcription factor	NA|133aa|down_5|CP029173.1_1709439_1709838_+	cd09871, PIN_MtVapC28-VapC30-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC28 and 30 and related proteins	NA|226aa|down_6|CP029173.1_1709842_1710520_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|185aa|down_7|CP029173.1_1710569_1711124_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|76aa|down_8|CP029173.1_1711137_1711365_-	NA	NA|118aa|down_9|CP029173.1_1711385_1711739_-	NA
GCA_003111705.1_ASM311170v1	CP029173	Methylobacterium sp. DM1 chromosome, complete genome	5	2381005-2381091	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,Cas9_archaeal	Orphan	ATAGAGCATCGTCCCGAAAGGTGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,Cas9_archaeal	NA|109aa|up_4|CP029173.1_2374980_2375307_-,NA|71aa|down_1|CP029173.1_2382874_2383087_+,NA|113aa|down_2|CP029173.1_2383096_2383435_-,NA|182aa|down_3|CP029173.1_2383516_2384062_-	NA|171aa|up_9|CP029173.1_2370334_2370847_-	PRK02853, PRK02853, hypothetical protein; Provisional	NA|432aa|up_8|CP029173.1_2370983_2372279_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|152aa|up_7|CP029173.1_2372310_2372766_-	pfam11164, DUF2948, Protein of unknown function (DUF2948)	NA|126aa|up_6|CP029173.1_2373023_2373401_+	PRK13410, PRK13410, molecular chaperone DnaK; Provisional	NA|430aa|up_5|CP029173.1_2373497_2374787_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|109aa|up_4|CP029173.1_2374980_2375307_-	NA	NA|463aa|up_3|CP029173.1_2375767_2377156_+	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated	NA|185aa|up_2|CP029173.1_2377623_2378178_-	pfam09832, DUF2059, Uncharacterized protein conserved in bacteria (DUF2059)	NA|101aa|up_1|CP029173.1_2378395_2378698_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|248aa|up_0|CP029173.1_2378725_2379469_-	cd07740, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|461aa|down_0|CP029173.1_2381269_2382652_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|71aa|down_1|CP029173.1_2382874_2383087_+	NA	NA|113aa|down_2|CP029173.1_2383096_2383435_-	NA	NA|182aa|down_3|CP029173.1_2383516_2384062_-	NA	NA|288aa|down_4|CP029173.1_2384422_2385286_+	PRK11820, PRK11820, YicC family protein	NA|223aa|down_5|CP029173.1_2385320_2385989_+	PRK00300, gmk, guanylate kinase; Provisional	NA|583aa|down_6|CP029173.1_2386029_2387778_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|436aa|down_7|CP029173.1_2387876_2389184_-	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein	NA|397aa|down_8|CP029173.1_2389395_2390586_-	pfam10098, DUF2336, Uncharacterized protein conserved in bacteria (DUF2336)	NA|273aa|down_9|CP029173.1_2390662_2391481_-	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)
GCA_003111705.1_ASM311170v1	CP029173	Methylobacterium sp. DM1 chromosome, complete genome	6	2509513-2509607	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,Cas9_archaeal	Orphan	GGCCGCCGGCTTTCGGAAAAAGACGATGCAC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,Cas9_archaeal	NA|101aa|up_4|CP029173.1_2504272_2504575_-,NA|110aa|down_0|CP029173.1_2509617_2509947_-,NA|68aa|down_6|CP029173.1_2516795_2516999_-,NA|86aa|down_7|CP029173.1_2517010_2517268_-	NA|499aa|up_9|CP029173.1_2493708_2495205_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|419aa|up_8|CP029173.1_2495546_2496803_+	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like	NA|871aa|up_7|CP029173.1_2497012_2499625_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|712aa|up_6|CP029173.1_2499771_2501907_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|656aa|up_5|CP029173.1_2502285_2504253_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|101aa|up_4|CP029173.1_2504272_2504575_-	NA	NA|773aa|up_3|CP029173.1_2504571_2506890_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|359aa|up_2|CP029173.1_2507219_2508296_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|117aa|up_1|CP029173.1_2508292_2508643_-	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown]	NA|211aa|up_0|CP029173.1_2508856_2509489_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|110aa|down_0|CP029173.1_2509617_2509947_-	NA	NA|72aa|down_1|CP029173.1_2510100_2510316_-	pfam11324, DUF3126, Protein of unknown function (DUF3126)	NA|287aa|down_2|CP029173.1_2510455_2511316_-	PRK11132, cysE, serine acetyltransferase; Provisional	NA|300aa|down_3|CP029173.1_2511575_2512475_-	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed	NA|540aa|down_4|CP029173.1_2512766_2514386_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|764aa|down_5|CP029173.1_2514382_2516674_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|68aa|down_6|CP029173.1_2516795_2516999_-	NA	NA|86aa|down_7|CP029173.1_2517010_2517268_-	NA	NA|252aa|down_8|CP029173.1_2517424_2518180_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|609aa|down_9|CP029173.1_2518574_2520401_+	pfam11849, DUF3369, Domain of unknown function (DUF3369)
GCA_003111705.1_ASM311170v1	CP029173	Methylobacterium sp. DM1 chromosome, complete genome	13	5147535-5147619	13	CRISPRCasFinder	no		csa3,DEDDh,cas3,Cas9_archaeal	Orphan	GAGCATCGTCCCGAAAGGTGGTCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,Cas9_archaeal	NA|72aa|up_9|CP029173.1_5137626_5137842_+,NA|144aa|down_5|CP029173.1_5155800_5156232_+	NA|72aa|up_9|CP029173.1_5137626_5137842_+	NA	NA|168aa|up_8|CP029173.1_5137838_5138342_+	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|300aa|up_7|CP029173.1_5138426_5139326_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|295aa|up_6|CP029173.1_5139322_5140207_+	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|486aa|up_5|CP029173.1_5140229_5141687_-	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	NA|68aa|up_4|CP029173.1_5141683_5141887_-	pfam11755, DUF3311, Protein of unknown function (DUF3311)	NA|683aa|up_3|CP029173.1_5142042_5144091_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|150aa|up_2|CP029173.1_5144461_5144911_-	cd07176, terB, tellurite resistance protein terB	NA|249aa|up_1|CP029173.1_5144958_5145705_-	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family	NA|546aa|up_0|CP029173.1_5145738_5147376_-	COG3178, COG3178, Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]	NA|838aa|down_0|CP029173.1_5147645_5150159_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|469aa|down_1|CP029173.1_5150651_5152058_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|543aa|down_2|CP029173.1_5152225_5153854_-	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|204aa|down_3|CP029173.1_5154021_5154633_-	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|266aa|down_4|CP029173.1_5154801_5155599_+	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	NA|144aa|down_5|CP029173.1_5155800_5156232_+	NA	NA|259aa|down_6|CP029173.1_5156820_5157597_+	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|479aa|down_7|CP029173.1_5157490_5158927_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|1046aa|down_8|CP029173.1_5159140_5162278_+	TIGR02786, conserved_hypothetical_protein, double-strand break repair protein AddB, alphaproteobacterial type	NA|1145aa|down_9|CP029173.1_5162274_5165709_+	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type
GCA_003111705.1_ASM311170v1	CP029173	Methylobacterium sp. DM1 chromosome, complete genome	14	5330541-5330635	14	CRISPRCasFinder	no		csa3,DEDDh,cas3,Cas9_archaeal	Orphan	TAGAGCATCGTCCCGAAAGGTGGCCCCCGGCT	32	1	1	5330573-5330603	CP029173.1_4338520-4338490	NA	1	1	Orphan	csa3,DEDDh,cas3,Cas9_archaeal	NA|146aa|up_4|CP029173.1_5323099_5323537_+,NA|87aa|down_4|CP029173.1_5335480_5335741_-,NA|87aa|down_5|CP029173.1_5335893_5336154_-,NA|78aa|down_8|CP029173.1_5337653_5337887_-,NA|73aa|down_9|CP029173.1_5338130_5338349_-	NA|375aa|up_9|CP029173.1_5317041_5318166_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|200aa|up_8|CP029173.1_5318195_5318795_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|909aa|up_7|CP029173.1_5319111_5321838_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|168aa|up_6|CP029173.1_5321965_5322469_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|180aa|up_5|CP029173.1_5322494_5323034_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|146aa|up_4|CP029173.1_5323099_5323537_+	NA	NA|154aa|up_3|CP029173.1_5323540_5324002_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|136aa|up_2|CP029173.1_5324342_5324750_-	cd18161, REC_hyHK_blue-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinase/response regulators similar to Pseudomonas savastanoi blue-light-activated histidine kinase	NA|258aa|up_1|CP029173.1_5325146_5325920_+	COG4544, COG4544, Uncharacterized conserved protein [Function unknown]	NA|468aa|up_0|CP029173.1_5325933_5327337_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|359aa|down_0|CP029173.1_5330720_5331797_-	cd01902, Ntn_CGH, Choloylglycine hydrolase (CGH) is a bile salt-modifying enzyme that hydrolyzes non-peptide carbon-nitrogen bonds in choloylglycine and choloyltaurine, both of which are present in bile	NA|342aa|down_1|CP029173.1_5332362_5333388_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|365aa|down_2|CP029173.1_5333476_5334571_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|219aa|down_3|CP029173.1_5334695_5335352_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|87aa|down_4|CP029173.1_5335480_5335741_-	NA	NA|87aa|down_5|CP029173.1_5335893_5336154_-	NA	NA|224aa|down_6|CP029173.1_5336610_5337282_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|81aa|down_7|CP029173.1_5337405_5337648_-	COG3514, COG3514, Uncharacterized protein conserved in bacteria [Function unknown]	NA|78aa|down_8|CP029173.1_5337653_5337887_-	NA	NA|73aa|down_9|CP029173.1_5338130_5338349_-	NA
