The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	273722	285518	4240954		Synechococcus_phage(37.5%)	9	NA	NA
AWH75944.1|273722_274235_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.6	7.8e-84
AWH75945.1|274684_275161_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AWH75946.1|275166_275865_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AWH75947.1|275876_277244_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AWH75948.1|277237_278314_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AWH75949.1|278307_278901_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	5.6e-25
AWH75950.1|278893_280426_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AWH75951.1|280436_281687_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AWH75952.1|281711_285518_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.4	1.0e-31
>prophage 2
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	397205	415683	4240954	integrase	Streptococcus_phage(100.0%)	22	393707:393724	415695:415712
393707:393724	attL	AATTTACTACTTATTTAC	NA	NA	NA	NA
AWH76058.1|397205_397532_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.1e-25
AWH76059.1|397547_397931_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	8.9e-32
AWH76060.1|398032_398797_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AWH76061.1|398895_400290_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	65.7	4.8e-176
AWH76062.1|400467_401673_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AWH76063.1|401715_401937_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AWH76064.1|402053_402551_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AWH76065.1|402525_403032_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AWH76066.1|403015_405463_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AWH76067.1|405465_407643_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
AWH76068.1|407639_408641_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AWH76069.1|408637_409573_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
AWH76070.1|409845_409932_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AWH76071.1|409947_411867_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
AWH76072.1|411967_412153_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AWH76073.1|412212_412566_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AWH79359.1|412770_412842_+	hypothetical protein	NA	NA	NA	NA	NA
AWH76074.1|413070_413493_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AWH76075.1|413489_413720_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AWH76076.1|413945_414197_-	hypothetical protein	NA	NA	NA	NA	NA
AWH76077.1|414180_414384_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AWH76078.1|414465_415683_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
415695:415712	attR	AATTTACTACTTATTTAC	NA	NA	NA	NA
>prophage 3
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	491032	497981	4240954		Streptococcus_phage(33.33%)	10	NA	NA
AWH79363.1|491032_491863_+	replication initiator protein A	NA	Q708R2	Streptococcus_phage	38.2	9.0e-05
AWH76142.1|491859_492702_+	ATP-binding protein	NA	H7BWC4	unidentified_phage	48.1	8.7e-64
AWH76143.1|492716_492905_+	hypothetical protein	NA	NA	NA	NA	NA
AWH76144.1|493016_494636_+	DUF4368 domain-containing protein	NA	C7F8K5	Bacillus_phage	28.1	4.0e-25
AWH76145.1|494897_495122_+	XRE family transcriptional regulator	NA	A0A2K5B263	Erysipelothrix_phage	38.2	2.8e-09
AWH76146.1|495153_495678_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79364.1|495778_495910_+	hypothetical protein	NA	NA	NA	NA	NA
AWH76147.1|495924_496719_+	hypothetical protein	NA	NA	NA	NA	NA
AWH76148.1|496733_497126_+	hypothetical protein	NA	M1PLC5	Streptococcus_phage	45.5	5.2e-19
AWH76149.1|497159_497981_-	transcriptional regulator	NA	A0A2R2ZGW9	Clostridioides_phage	39.8	1.2e-06
>prophage 4
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	1505910	1568776	4240954	tail,portal,tRNA,protease,plate	Clostridium_phage(46.15%)	61	NA	NA
AWH76995.1|1505910_1506645_+|protease	Clp protease	protease	NA	NA	NA	NA
AWH76996.1|1506767_1509182_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AWH76997.1|1509184_1510243_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AWH76998.1|1510236_1511571_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AWH76999.1|1511557_1512100_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AWH77000.1|1512387_1513434_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AWH79399.1|1513609_1515151_+	ribonuclease Y	NA	NA	NA	NA	NA
AWH77001.1|1515785_1517567_+	DNA helicase	NA	NA	NA	NA	NA
AWH77002.1|1517648_1518179_-	signal peptidase I	NA	NA	NA	NA	NA
AWH77003.1|1518218_1519043_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AWH77004.1|1519299_1520208_+	recombinase	NA	NA	NA	NA	NA
AWH77005.1|1520351_1521797_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AWH77006.1|1522107_1522560_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AWH77007.1|1522963_1524541_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AWH77008.1|1524688_1525441_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AWH77009.1|1525579_1526941_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AWH77010.1|1527031_1528228_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AWH77011.1|1528612_1529563_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AWH77012.1|1529715_1530468_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	44.8	3.2e-57
AWH77013.1|1530559_1531336_-	exonuclease	NA	NA	NA	NA	NA
AWH77014.1|1531650_1533549_+	glutamine synthetase	NA	NA	NA	NA	NA
AWH79400.1|1533676_1534798_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AWH77015.1|1534996_1535329_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AWH77016.1|1535315_1536374_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AWH77017.1|1536366_1537437_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77018.1|1537538_1538075_+	lipoprotein	NA	NA	NA	NA	NA
AWH77019.1|1538190_1538898_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.5	9.6e-56
AWH77020.1|1538899_1539616_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AWH77021.1|1539617_1540376_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AWH77022.1|1540510_1541899_+	sensor histidine kinase	NA	NA	NA	NA	NA
AWH77023.1|1541974_1542796_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AWH77024.1|1543046_1544201_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AWH77025.1|1544383_1544584_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AWH77026.1|1545004_1545433_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AWH77027.1|1545575_1546331_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AWH77028.1|1546451_1546868_-	hypothetical protein	NA	NA	NA	NA	NA
AWH77029.1|1547031_1547538_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AWH77030.1|1547619_1547940_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AWH77031.1|1548108_1548306_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWH77032.1|1548410_1548851_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AWH77033.1|1549099_1549543_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
AWH77034.1|1549547_1550612_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	53.1	1.2e-97
AWH77035.1|1550625_1551054_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AWH77036.1|1551167_1551614_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.8e-12
AWH77037.1|1551640_1551808_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77038.1|1551807_1554207_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	45.6	6.4e-19
AWH77039.1|1554206_1554629_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AWH77040.1|1554910_1556443_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	79.7	1.8e-237
AWH77041.1|1556458_1556785_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	2.3e-52
AWH77042.1|1556784_1557213_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AWH77043.1|1557205_1558258_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	69.8	5.7e-137
AWH77044.1|1558254_1558953_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AWH77045.1|1558953_1559940_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	46.8	7.6e-59
AWH77046.1|1559961_1565193_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	31.3	3.4e-81
AWH77047.1|1565209_1565563_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
AWH77048.1|1565825_1566086_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AWH77049.1|1566309_1566765_-	hypothetical protein	NA	NA	NA	NA	NA
AWH77050.1|1566992_1567412_-	transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AWH77051.1|1567710_1567920_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AWH77052.1|1567939_1568161_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77053.1|1568377_1568776_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 5
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	1650185	1659914	4240954		Pandoravirus(37.5%)	11	NA	NA
AWH77120.1|1650185_1650770_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.7	1.7e-58
AWH77121.1|1650762_1652121_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AWH77122.1|1652110_1652854_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AWH77123.1|1652887_1653589_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77124.1|1653614_1654187_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AWH77125.1|1654240_1655044_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	1.3e-24
AWH79404.1|1655054_1655420_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AWH77126.1|1655412_1655919_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	36.6	2.5e-13
AWH77127.1|1655899_1656685_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	28.3	1.0e-13
AWH77128.1|1656939_1658730_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AWH77129.1|1658741_1659914_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.7e-37
>prophage 6
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	1785555	1841153	4240954	portal,tail,integrase,capsid,holin,terminase,head	Clostridium_phage(83.02%)	63	1787396:1787423	1842502:1842529
AWH77236.1|1785555_1787250_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.2	6.5e-50
1787396:1787423	attL	TAGAATAATATTACAACTTAAGTAAATA	NA	NA	NA	NA
AWH77237.1|1787607_1788738_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.5	5.0e-216
AWH77238.1|1788977_1789484_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AWH77239.1|1789746_1791336_-	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	27.9	4.0e-33
AWH77240.1|1791359_1791905_-	XRE family transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	53.3	2.6e-45
AWH77241.1|1792085_1792301_+	XRE family transcriptional regulator	NA	A0A0A8WIG0	Clostridium_phage	77.5	3.8e-24
AWH77242.1|1792331_1793105_+	Rha family transcriptional regulator	NA	A0A0A8WIJ5	Clostridium_phage	39.6	4.6e-35
AWH77243.1|1793224_1794055_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	62.8	4.4e-84
AWH77244.1|1794101_1794311_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77245.1|1794320_1794695_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AWH77246.1|1794770_1794968_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	4.9e-26
AWH77247.1|1794998_1795391_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	94.6	6.7e-59
AWH77248.1|1795591_1796029_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77249.1|1796040_1797207_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.1e-117
AWH77250.1|1797221_1797557_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77251.1|1797609_1798182_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AWH77252.1|1798204_1798777_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AWH77253.1|1798776_1800735_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.4	5.4e-266
AWH77254.1|1800746_1803164_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AWH77255.1|1803445_1803772_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AWH77256.1|1803720_1805091_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.3	8.4e-157
AWH77257.1|1805244_1805724_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.6	3.3e-36
AWH77258.1|1806208_1806445_+	hypothetical protein	NA	A0A0A8WJQ8	Clostridium_phage	96.2	3.3e-37
AWH77259.1|1806747_1807722_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77260.1|1807777_1807978_-	hypothetical protein	NA	NA	NA	NA	NA
AWH77261.1|1807958_1808252_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77262.1|1808322_1809015_+	hypothetical protein	NA	A0A0A8WFS6	Clostridium_phage	98.3	1.7e-121
AWH79410.1|1809004_1810246_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.0	2.1e-244
AWH77263.1|1810251_1811691_+|portal	phage portal protein	portal	A0A0A8WFC0	Clostridium_phage	99.8	5.3e-279
AWH77264.1|1811680_1813174_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	96.8	1.1e-284
AWH79411.1|1813151_1813382_+	hypothetical protein	NA	X5JAV8	Clostridium_phage	100.0	1.8e-35
AWH77265.1|1813691_1814255_+	scaffolding protein	NA	X5JAB4	Clostridium_phage	89.3	3.0e-84
AWH77266.1|1814266_1815166_+|capsid	capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	100.0	2.8e-169
AWH77267.1|1815165_1815399_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	96.1	3.2e-32
AWH77268.1|1815408_1815810_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AWH77269.1|1815803_1816151_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AWH77270.1|1816150_1816576_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	97.9	3.2e-75
AWH77271.1|1816568_1817006_+	hypothetical protein	NA	X5JAB5	Clostridium_phage	92.4	2.8e-74
AWH77272.1|1816998_1817175_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	91.4	5.5e-21
AWH77273.1|1817175_1818486_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	94.0	7.3e-235
AWH77274.1|1818502_1818973_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AWH77275.1|1819044_1819485_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AWH77276.1|1819484_1819679_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77277.1|1819825_1819987_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AWH77278.1|1821134_1821887_+	SHOCT domain-containing protein	NA	A0A090DCP8	Clostridium_phage	51.6	6.2e-61
AWH77279.1|1822190_1822364_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AWH79412.1|1822919_1823315_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	88.4	9.4e-61
AWH77280.1|1823952_1824531_+	zinc ribbon domain-containing protein	NA	A0A0A8WFW4	Clostridium_phage	90.3	3.8e-87
AWH77281.1|1824606_1826973_+	hypothetical protein	NA	A0A0A8WJT6	Clostridium_phage	71.3	1.3e-282
AWH77282.1|1826988_1827690_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WFE5	Clostridium_phage	93.5	8.4e-121
AWH77283.1|1827682_1829647_+	cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	86.1	6.1e-310
AWH77284.1|1829660_1829921_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	96.5	2.5e-38
AWH77285.1|1829925_1830345_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	98.6	3.9e-73
AWH77286.1|1830345_1831392_+|tail	phage tail protein	tail	X5JAB8	Clostridium_phage	94.2	2.6e-182
AWH77287.1|1831384_1832002_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AWH77288.1|1832013_1833006_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	94.1	1.5e-160
AWH77289.1|1834755_1835103_+	hypothetical protein	NA	A3QSB8	Clostridium_virus	100.0	5.5e-57
AWH77290.1|1835315_1835882_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	78.7	1.2e-37
AWH77291.1|1835912_1836203_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	100.0	6.3e-46
AWH77292.1|1836206_1836464_+|holin	holin	holin	A0A0A8WF70	Clostridium_phage	95.3	6.6e-39
AWH77293.1|1837665_1838478_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0K2SUC5	Clostridium_phage	94.4	1.3e-149
AWH77294.1|1838634_1840926_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AWH77295.1|1840967_1841153_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
1842502:1842529	attR	TAGAATAATATTACAACTTAAGTAAATA	NA	NA	NA	NA
>prophage 7
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	2625175	2639316	4240954	integrase,holin	Clostridium_phage(71.43%)	18	2631493:2631509	2646210:2646226
AWH77987.1|2625175_2625922_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WHU0	Clostridium_phage	67.5	3.9e-84
AWH77988.1|2625921_2626179_-|holin	holin	holin	A0A0A8WF70	Clostridium_phage	83.5	7.5e-35
AWH77989.1|2626198_2626429_-	hypothetical protein	NA	A0A0A8WEZ7	Clostridium_phage	97.4	4.8e-33
AWH77990.1|2626486_2628034_-	hypothetical protein	NA	B6SBV0	Clostridium_virus	75.7	7.2e-181
AWH77991.1|2628168_2628351_-	hypothetical protein	NA	J9QDY8	Clostridium_phage	90.0	1.2e-23
AWH77992.1|2628656_2630150_-	hypothetical protein	NA	J9QE87	Clostridium_phage	55.2	6.0e-108
AWH77993.1|2630165_2630513_-	hypothetical protein	NA	J9QED3	Clostridium_phage	68.5	1.9e-20
AWH79430.1|2630500_2631784_-	DUF2313 domain-containing protein	NA	A0A0A8WFK0	Clostridium_phage	81.3	5.7e-131
2631493:2631509	attL	CAGCAGTTTCAAGACCA	NA	NA	NA	NA
AWH77994.1|2632159_2632594_+	hypothetical protein	NA	NA	NA	NA	NA
AWH77995.1|2632681_2634241_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	52.0	1.9e-72
AWH77996.1|2634445_2634886_+	hypothetical protein	NA	A0A0A8WIE1	Clostridium_phage	69.8	1.9e-54
AWH77997.1|2634927_2635587_+|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	55.0	3.7e-62
AWH77998.1|2636554_2636932_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJU1	Clostridium_phage	91.2	3.6e-54
AWH77999.1|2637491_2637680_-	hypothetical protein	NA	NA	NA	NA	NA
AWH78000.1|2637840_2638191_+	DUF3796 domain-containing protein	NA	NA	NA	NA	NA
AWH78001.1|2638192_2638393_+	transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	3.7e-05
AWH78002.1|2638715_2638892_+	hypothetical protein	NA	NA	NA	NA	NA
AWH78003.1|2639115_2639316_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	71.4	2.0e-19
2646210:2646226	attR	TGGTCTTGAAACTGCTG	NA	NA	NA	NA
>prophage 8
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	2877650	2886240	4240954	holin	Clostridium_phage(66.67%)	11	NA	NA
AWH78211.1|2877650_2878034_-	transcriptional regulator	NA	A0A090DCS9	Clostridium_phage	89.8	4.1e-61
AWH78212.1|2878413_2878590_+	hypothetical protein	NA	NA	NA	NA	NA
AWH78213.1|2878815_2879016_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
AWH78214.1|2879446_2880784_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	59.9	1.3e-138
AWH78215.1|2880826_2881408_+	accessory regulator	NA	X5JB40	Clostridium_phage	49.2	1.0e-42
AWH78216.1|2881425_2881587_+	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
AWH78217.1|2881608_2882406_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WE15	Clostridium_phage	90.7	1.1e-140
AWH78218.1|2882402_2882663_-|holin	holin	holin	A3QSC5	Clostridium_virus	77.6	7.9e-32
AWH78219.1|2883532_2883691_-	hypothetical protein	NA	J9QED5	Clostridium_phage	63.5	1.6e-08
AWH78220.1|2884048_2885419_-	cell wall-binding protein Cwp29	NA	A0A2R2ZGK6	Clostridioides_phage	43.9	1.6e-70
AWH78221.1|2885817_2886240_+	hypothetical protein	NA	X5JB41	Clostridium_phage	69.8	4.4e-48
>prophage 9
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	3190739	3199692	4240954		Catovirus(50.0%)	8	NA	NA
AWH78469.1|3190739_3192653_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AWH78470.1|3192736_3193828_-	glycosyltransferase family 4 protein	NA	A0A1V0SL50	Klosneuvirus	26.2	2.3e-16
AWH79442.1|3193833_3195129_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.4	4.9e-90
AWH78471.1|3195154_3195907_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AWH78472.1|3195954_3196863_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AWH78473.1|3196884_3197634_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AWH78474.1|3197662_3198853_-	glycerophosphotransferase	NA	NA	NA	NA	NA
AWH78475.1|3198852_3199692_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 10
CP029152	Clostridioides difficile strain CDT4 chromosome, complete genome	4240954	3641066	3677624	4240954	tail,portal,integrase,capsid,protease,holin,plate,terminase,head	Clostridium_phage(79.49%)	47	3665942:3665959	3686745:3686762
AWH78808.1|3641066_3643094_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	24.0	2.6e-21
AWH78809.1|3643555_3644035_+	hypothetical protein	NA	NA	NA	NA	NA
AWH78810.1|3644063_3644876_-	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	93.3	4.2e-148
AWH78811.1|3644875_3645133_-|holin	holin	holin	A0A0K2SUI8	Clostridium_phage	91.8	2.0e-40
AWH78812.1|3645152_3645383_-	hypothetical protein	NA	A0A0A8WJR7	Clostridium_phage	97.4	2.8e-33
AWH78813.1|3645453_3645987_-	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	83.8	1.7e-28
AWH78814.1|3646020_3646203_-	hypothetical protein	NA	J9QE73	Clostridium_phage	95.0	7.2e-24
AWH78815.1|3646202_3646496_-	hypothetical protein	NA	J9QE35	Clostridium_phage	91.8	2.7e-44
AWH78816.1|3646509_3648207_-	hypothetical protein	NA	A0A090EUF1	Clostridium_phage	59.9	1.7e-135
AWH78817.1|3648223_3649225_-|tail	phage tail protein	tail	A0A1V0DZY8	Clostridioides_phage	80.5	6.4e-114
AWH78818.1|3649226_3649844_-	DUF2313 domain-containing protein	NA	J9QD29	Clostridium_phage	87.8	6.5e-101
AWH78819.1|3649840_3650896_-|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	94.3	1.9e-185
AWH78820.1|3650888_3651317_-	DUF2634 domain-containing protein	NA	J9QE34	Clostridium_phage	93.7	2.0e-72
AWH78821.1|3651316_3651643_-	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	90.7	1.2e-48
AWH78822.1|3651658_3653176_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	88.6	1.3e-254
AWH78823.1|3653415_3654051_-	LysM peptidoglycan-binding domain-containing protein	NA	J9QDY6	Clostridium_phage	97.6	1.6e-118
AWH78824.1|3654050_3655805_-	hypothetical protein	NA	A0A0K2SUF9	Clostridium_phage	92.3	2.4e-225
AWH78825.1|3655988_3656372_-|portal	phage portal protein	portal	J9QED1	Clostridium_phage	100.0	6.8e-56
AWH78826.1|3656420_3656870_-|terminase	terminase	terminase	A0A0A8WF55	Clostridium_phage	93.3	1.4e-76
AWH78827.1|3656882_3657950_-|tail	phage tail sheath protein	tail	J9QDY5	Clostridium_phage	95.8	4.6e-187
AWH78828.1|3657964_3658381_-	hypothetical protein	NA	A0A0K2SUF6	Clostridium_phage	94.9	1.1e-64
AWH78829.1|3658392_3658806_-	hypothetical protein	NA	A0A0K2SUA7	Clostridium_phage	94.2	2.2e-68
AWH78830.1|3658798_3659137_-|head,tail	head-tail adaptor protein	head,tail	A0A0A8WI51	Clostridium_phage	98.2	9.8e-59
AWH78831.1|3659138_3659426_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0A8WF50	Clostridium_phage	95.8	3.2e-42
AWH78832.1|3659435_3660704_-|capsid	phage major capsid protein	capsid	A0A0K2SUH4	Clostridium_phage	97.9	2.8e-231
AWH78833.1|3660696_3661434_-|protease	Clp protease ClpP	protease	A0A0A8WFM9	Clostridium_phage	88.6	1.5e-123
AWH78834.1|3661439_3662594_-|portal	phage portal protein	portal	J9QE83	Clostridium_phage	93.5	2.4e-205
AWH78835.1|3662609_3664259_-|terminase	terminase large subunit	terminase	A0A0A8WI49	Clostridium_phage	94.9	0.0e+00
AWH78836.1|3664255_3664645_-	hypothetical protein	NA	A0A090C9N7	Clostridium_phage	100.0	3.2e-61
AWH78837.1|3664742_3665036_-	HNH endonuclease	NA	J9QDZ3	Clostridium_phage	91.8	5.2e-48
AWH78838.1|3665028_3665322_-	hypothetical protein	NA	J9QE40	Clostridium_phage	48.9	8.3e-14
AWH78839.1|3665518_3666118_-|integrase	integrase	integrase	A0A0A8WF93	Clostridium_phage	89.8	6.8e-79
3665942:3665959	attL	TCTTTTTAAAGCTTCTTT	NA	NA	NA	NA
AWH78840.1|3666404_3667232_-	hypothetical protein	NA	NA	NA	NA	NA
AWH78841.1|3667603_3668116_-	transcriptional regulator	NA	A0A1V0E028	Clostridioides_phage	45.2	3.6e-28
AWH78842.1|3668301_3668595_-	hypothetical protein	NA	NA	NA	NA	NA
AWH78843.1|3668608_3668866_-	hypothetical protein	NA	NA	NA	NA	NA
AWH78844.1|3668855_3669485_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AWH78845.1|3669499_3670834_-	helicase	NA	A0A222ZRG2	Mycobacterium_phage	28.2	7.2e-28
AWH78846.1|3670848_3671613_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	29.4	8.0e-24
AWH78847.1|3671636_3671867_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AWH78848.1|3671878_3672316_-	XRE family transcriptional regulator	NA	A0A1L2BY71	Clostridium_phage	38.2	1.3e-15
AWH78849.1|3672343_3672562_-	transcriptional regulator	NA	NA	NA	NA	NA
AWH78850.1|3672726_3673074_+	XRE family transcriptional regulator	NA	A0A090D830	Clostridium_phage	34.8	1.0e-10
AWH78851.1|3673120_3674281_-	endonuclease	NA	A0A1S5SAB0	Streptococcus_phage	54.1	3.2e-64
AWH78852.1|3675034_3675256_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWH78853.1|3675303_3676482_+|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	31.0	2.6e-37
AWH78854.1|3677132_3677624_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	54.5	3.7e-38
3686745:3686762	attR	TCTTTTTAAAGCTTCTTT	NA	NA	NA	NA
>prophage 1
CP029153	Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence	48594	409	11901	48594		Clostridium_phage(61.54%)	20	NA	NA
AWH79476.1|409_946_-	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	39.6	7.6e-29
AWH79477.1|945_1272_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79478.1|1461_2046_-	sigma-70 family RNA polymerase sigma factor	NA	S5MNV1	Brevibacillus_phage	28.9	1.8e-07
AWH79479.1|2023_2401_-	single-stranded DNA-binding protein	NA	E2ELN0	Clostridium_phage	57.0	1.1e-37
AWH79480.1|2397_2580_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79481.1|2636_3341_-	hypothetical protein	NA	A0A0A7RUC6	Clostridium_phage	57.1	2.2e-68
AWH79482.1|3392_3779_-	hypothetical protein	NA	A0A0A7RUF3	Clostridium_phage	47.0	5.6e-18
AWH79483.1|4149_5478_-	DNA helicase	NA	A0A2H4J8K1	uncultured_Caudovirales_phage	26.8	9.3e-20
AWH79484.1|5499_5817_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79485.1|5954_6143_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79486.1|6135_6396_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79487.1|6558_6771_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79488.1|6789_7008_-	hypothetical protein	NA	A0A090D836	Clostridium_phage	46.9	1.7e-08
AWH79489.1|7034_7220_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79490.1|7247_7967_-	helix-turn-helix domain-containing protein	NA	A0A1V0E018	Clostridioides_phage	57.8	7.0e-30
AWH79491.1|7995_8202_-	hypothetical protein	NA	E2ELM0	Clostridium_phage	49.3	2.7e-11
AWH79492.1|8535_8910_+	XRE family transcriptional regulator	NA	A0A1V0E015	Clostridioides_phage	76.6	2.1e-46
AWH79493.1|9543_9912_+	XRE family transcriptional regulator	NA	E2ELL8	Clostridium_phage	82.6	8.5e-48
AWH79494.1|10679_11063_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	45.7	5.6e-26
AWH79495.1|11211_11901_-	HTH domain-containing protein	NA	E2ELL5	Clostridium_phage	41.7	1.7e-41
>prophage 2
CP029153	Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence	48594	15201	47876	48594	head,holin,plate,portal,tail	Clostridioides_phage(60.53%)	44	NA	NA
AWH79499.1|15201_15354_+	hypothetical protein	NA	J9QED5	Clostridium_phage	53.2	1.6e-05
AWH79541.1|15734_16049_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79500.1|16083_16542_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79501.1|16790_16994_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79502.1|17013_17919_+	ATPase	NA	Q0SPH6	Clostridium_phage	28.6	5.2e-22
AWH79503.1|18001_18517_+	hypothetical protein	NA	A0A0A8WEM4	Clostridium_phage	35.6	7.8e-23
AWH79504.1|18527_18863_-	CopY family transcriptional regulator	NA	A0A0A8WFI6	Clostridium_phage	45.0	3.7e-18
AWH79505.1|19000_20107_-	DNA (cytosine-5-)-methyltransferase	NA	A0A0A8WIK9	Clostridium_phage	62.7	6.2e-126
AWH79506.1|20178_20994_-	cell wall hydrolase	NA	Q24LG3	Clostridium_phage	96.3	1.3e-149
AWH79507.1|20993_21251_-|holin	holin	holin	A0A0K2SUI8	Clostridium_phage	96.5	5.4e-41
AWH79508.1|21254_21545_-	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	100.0	6.3e-46
AWH79509.1|21575_22142_-	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	81.1	8.5e-39
AWH79510.1|22174_22357_-	hypothetical protein	NA	A0A090D845	Clostridium_phage	96.7	1.4e-24
AWH79511.1|22356_22650_-	hypothetical protein	NA	A0A2R2ZGK0	Clostridioides_phage	75.3	6.6e-35
AWH79512.1|24307_25309_-|tail	phage tail protein	tail	A0A090DCR2	Clostridium_phage	86.5	9.8e-139
AWH79513.1|25309_25927_-	DUF2313 domain-containing protein	NA	J9QD29	Clostridium_phage	82.9	3.6e-91
AWH79514.1|25928_26981_-|plate	baseplate protein J	plate	A0A1V0DZY2	Clostridioides_phage	90.3	4.7e-176
AWH79515.1|26973_27408_-	DUF2634 domain-containing protein	NA	A0A1V0DZX2	Clostridioides_phage	90.1	6.5e-71
AWH79516.1|27400_27733_-	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	87.0	3.1e-49
AWH79542.1|27746_29264_-	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	88.0	6.7e-264
AWH79517.1|29503_30139_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1V0DZX0	Clostridioides_phage	86.3	2.5e-108
AWH79518.1|30196_30673_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
AWH79519.1|30719_34112_-|tail	phage tail tape measure protein	tail	A0A1V0DZX3	Clostridioides_phage	57.4	2.6e-175
AWH79520.1|34291_34708_-|portal	phage portal protein	portal	A0A1V0DZX5	Clostridioides_phage	81.2	3.5e-58
AWH79521.1|34723_35164_-|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	77.5	1.3e-63
AWH79522.1|35179_36235_-|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	85.5	5.6e-169
AWH79523.1|36235_36685_-	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	89.3	4.0e-68
AWH79524.1|36693_37050_-	HK97 gp10 family phage protein	NA	A0A1V0DZV8	Clostridioides_phage	92.4	5.7e-57
AWH79525.1|37049_37397_-	hypothetical protein	NA	A0A1V0DZW2	Clostridioides_phage	89.6	1.4e-55
AWH79526.1|37408_37789_-	hypothetical protein	NA	A0A1V0DZU9	Clostridioides_phage	93.7	1.9e-58
AWH79527.1|37772_38045_-	hypothetical protein	NA	A0A1V0DZV5	Clostridioides_phage	75.3	4.2e-28
AWH79528.1|38058_38982_-	hypothetical protein	NA	A0A1V0DZW0	Clostridioides_phage	85.3	9.6e-149
AWH79529.1|39010_39613_-	DUF4355 domain-containing protein	NA	A0A1V0DZW6	Clostridioides_phage	72.9	5.6e-73
AWH79530.1|39638_39965_-	hypothetical protein	NA	A0A1J1J9Q7	Escherichia_phage	30.6	1.2e-05
AWH79531.1|40024_40786_-|head	phage head morphogenesis protein	head	A0A1V0DZW9	Clostridioides_phage	87.0	7.8e-112
AWH79532.1|40763_42041_-|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	87.3	1.7e-215
AWH79533.1|42053_42257_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79534.1|42257_43997_-	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	93.3	0.0e+00
AWH79535.1|44551_45010_-	resolvase	NA	A0A1V0E032	Clostridioides_phage	77.6	3.9e-58
AWH79536.1|45224_45869_-	recombinase	NA	A0A1V0E036	Clostridioides_phage	98.1	1.6e-113
AWH79543.1|45872_46418_-	hypothetical protein	NA	A0A1V0E034	Clostridioides_phage	83.9	2.4e-75
AWH79537.1|46560_47004_-	RNA polymerase subunit sigma	NA	A0A1V0E028	Clostridioides_phage	72.4	9.3e-49
AWH79538.1|47113_47371_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79539.1|47390_47876_-	hypothetical protein	NA	Q24LD1	Clostridium_phage	57.3	3.3e-15
