The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	273724	285520	4295210		Synechococcus_phage(37.5%)	9	NA	NA
AWH79755.1|273724_274237_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.6	7.8e-84
AWH79756.1|274686_275163_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
AWH79757.1|275168_275867_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
AWH79758.1|275878_277246_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
AWH79759.1|277239_278316_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
AWH79760.1|278309_278903_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	5.6e-25
AWH79761.1|278895_280428_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
AWH79762.1|280438_281689_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
AWH79763.1|281713_285520_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.4	1.0e-31
>prophage 2
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	397193	415671	4295210	integrase	Streptococcus_phage(100.0%)	22	393695:393712	415683:415700
393695:393712	attL	AATTTACTACTTATTTAC	NA	NA	NA	NA
AWH79869.1|397193_397520_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.1e-25
AWH79870.1|397535_397919_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	8.9e-32
AWH79871.1|398020_398785_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AWH79872.1|398883_400278_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	65.7	4.8e-176
AWH79873.1|400455_401661_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
AWH79874.1|401703_401925_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
AWH79875.1|402041_402539_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
AWH79876.1|402513_403020_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
AWH79877.1|403003_405451_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
AWH79878.1|405453_407631_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
AWH79879.1|407627_408629_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
AWH79880.1|408625_409561_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
AWH79881.1|409833_409920_+	tetracycline resistance protein	NA	NA	NA	NA	NA
AWH79882.1|409935_411855_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
AWH79883.1|411955_412141_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
AWH79884.1|412200_412554_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
AWH83257.1|412758_412830_+	hypothetical protein	NA	NA	NA	NA	NA
AWH79885.1|413058_413481_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
AWH79886.1|413477_413708_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
AWH79887.1|413933_414185_-	hypothetical protein	NA	NA	NA	NA	NA
AWH79888.1|414168_414372_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
AWH79889.1|414453_415671_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
415683:415700	attR	AATTTACTACTTATTTAC	NA	NA	NA	NA
>prophage 3
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	1465061	1527927	4295210	portal,plate,tRNA,tail,protease	Clostridium_phage(46.15%)	61	NA	NA
AWH80761.1|1465061_1465796_+|protease	Clp protease	protease	NA	NA	NA	NA
AWH80762.1|1465918_1468333_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
AWH80763.1|1468335_1469394_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
AWH80764.1|1469387_1470722_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AWH80765.1|1470708_1471251_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AWH80766.1|1471538_1472585_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
AWH83291.1|1472760_1474302_+	ribonuclease Y	NA	NA	NA	NA	NA
AWH80767.1|1474936_1476718_+	DNA helicase	NA	NA	NA	NA	NA
AWH80768.1|1476799_1477330_-	signal peptidase I	NA	NA	NA	NA	NA
AWH80769.1|1477369_1478194_-	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
AWH80770.1|1478450_1479359_+	recombinase	NA	NA	NA	NA	NA
AWH80771.1|1479502_1480948_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
AWH80772.1|1481258_1481711_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AWH80773.1|1482114_1483692_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA	NA
AWH80774.1|1483839_1484592_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AWH80775.1|1484730_1486092_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
AWH80776.1|1486182_1487379_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AWH80777.1|1487763_1488714_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
AWH80778.1|1488866_1489619_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	44.8	3.2e-57
AWH80779.1|1489710_1490487_-	exonuclease	NA	NA	NA	NA	NA
AWH80780.1|1490801_1492700_+	glutamine synthetase	NA	NA	NA	NA	NA
AWH83292.1|1492827_1493949_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
AWH80781.1|1494147_1494480_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AWH80782.1|1494466_1495525_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
AWH80783.1|1495517_1496588_+	hypothetical protein	NA	NA	NA	NA	NA
AWH80784.1|1496689_1497226_+	lipoprotein	NA	NA	NA	NA	NA
AWH80785.1|1497341_1498049_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.5	9.6e-56
AWH80786.1|1498050_1498767_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
AWH80787.1|1498768_1499527_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
AWH80788.1|1499661_1501050_+	sensor histidine kinase	NA	NA	NA	NA	NA
AWH80789.1|1501125_1501947_-	pyridoxamine kinase	NA	NA	NA	NA	NA
AWH80790.1|1502197_1503352_+	amidase domain-containing protein	NA	NA	NA	NA	NA
AWH80791.1|1503534_1503735_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
AWH80792.1|1504155_1504584_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AWH80793.1|1504726_1505482_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AWH80794.1|1505602_1506019_-	hypothetical protein	NA	NA	NA	NA	NA
AWH80795.1|1506182_1506689_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
AWH80796.1|1506770_1507091_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
AWH80797.1|1507259_1507457_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWH80798.1|1507561_1508002_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
AWH80799.1|1508250_1508694_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
AWH80800.1|1508698_1509763_+|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	53.1	1.2e-97
AWH80801.1|1509776_1510205_+|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
AWH80802.1|1510318_1510765_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.8e-12
AWH80803.1|1510791_1510959_+	hypothetical protein	NA	NA	NA	NA	NA
AWH80804.1|1510958_1513358_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	45.6	6.4e-19
AWH80805.1|1513357_1513780_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
AWH80806.1|1514061_1515594_+	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	79.7	1.8e-237
AWH80807.1|1515609_1515936_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	2.3e-52
AWH80808.1|1515935_1516364_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
AWH80809.1|1516356_1517409_+|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	69.8	5.7e-137
AWH80810.1|1517405_1518104_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
AWH80811.1|1518104_1519091_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	46.8	7.6e-59
AWH80812.1|1519112_1524344_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	31.3	3.4e-81
AWH80813.1|1524360_1524714_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
AWH80814.1|1524976_1525237_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
AWH80815.1|1525460_1525916_-	hypothetical protein	NA	NA	NA	NA	NA
AWH80816.1|1526143_1526563_-	transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
AWH80817.1|1526861_1527071_+	XRE family transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
AWH80818.1|1527090_1527312_+	hypothetical protein	NA	NA	NA	NA	NA
AWH80819.1|1527528_1527927_-	transcriptional regulator	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 4
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	1609338	1619067	4295210		Pandoravirus(37.5%)	11	NA	NA
AWH80887.1|1609338_1609923_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.7	1.7e-58
AWH80888.1|1609915_1611274_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
AWH80889.1|1611263_1612007_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
AWH80890.1|1612040_1612742_+	hypothetical protein	NA	NA	NA	NA	NA
AWH80891.1|1612767_1613340_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
AWH80892.1|1613393_1614197_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	1.3e-24
AWH83296.1|1614207_1614573_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AWH80893.1|1614565_1615072_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	36.6	2.5e-13
AWH80894.1|1615052_1615838_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	28.3	1.0e-13
AWH80895.1|1616092_1617883_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
AWH80896.1|1617894_1619067_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.7e-37
>prophage 5
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	1744707	1800305	4295210	capsid,holin,integrase,head,terminase,portal,tail	Clostridium_phage(83.02%)	63	1746548:1746575	1801654:1801681
AWH81004.1|1744707_1746402_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.2	6.5e-50
1746548:1746575	attL	TAGAATAATATTACAACTTAAGTAAATA	NA	NA	NA	NA
AWH81005.1|1746759_1747890_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.5	5.0e-216
AWH81006.1|1748129_1748636_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
AWH81007.1|1748898_1750488_-	hypothetical protein	NA	A0A1S5SA14	Streptococcus_phage	27.9	4.0e-33
AWH81008.1|1750511_1751057_-	XRE family transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	53.3	2.6e-45
AWH81009.1|1751237_1751453_+	XRE family transcriptional regulator	NA	A0A0A8WIG0	Clostridium_phage	77.5	3.8e-24
AWH81010.1|1751483_1752257_+	Rha family transcriptional regulator	NA	A0A0A8WIJ5	Clostridium_phage	39.6	4.6e-35
AWH81011.1|1752376_1753207_+	phage antirepressor protein	NA	A0A0A8WIE3	Clostridium_phage	62.8	4.4e-84
AWH81012.1|1753253_1753463_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81013.1|1753472_1753847_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
AWH81014.1|1753922_1754120_+	XRE family transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	4.9e-26
AWH81015.1|1754150_1754543_+	DNA-binding protein	NA	A0A0A8WHS2	Clostridium_phage	94.6	6.7e-59
AWH81016.1|1754743_1755181_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81017.1|1755192_1756359_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.1e-117
AWH81018.1|1756373_1756709_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81019.1|1756761_1757334_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AWH81020.1|1757356_1757929_+	DUF2815 domain-containing protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
AWH81021.1|1757928_1759887_+	DNA polymerase I	NA	A0A0A7RTL3	Clostridium_phage	69.4	5.4e-266
AWH81022.1|1759898_1762316_+	hypothetical protein	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
AWH81023.1|1762597_1762924_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
AWH81024.1|1762872_1764243_+	ATP-dependent helicase	NA	A0A1S7FYY5	Listeria_phage	60.3	8.4e-157
AWH81025.1|1764396_1764876_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.6	3.3e-36
AWH81026.1|1765360_1765597_+	hypothetical protein	NA	A0A0A8WJQ8	Clostridium_phage	96.2	3.3e-37
AWH81027.1|1765899_1766874_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81028.1|1766929_1767130_-	hypothetical protein	NA	NA	NA	NA	NA
AWH81029.1|1767110_1767404_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81030.1|1767474_1768167_+	hypothetical protein	NA	A0A0A8WFS6	Clostridium_phage	98.3	1.7e-121
AWH83301.1|1768156_1769398_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.0	2.1e-244
AWH81031.1|1769403_1770843_+|portal	phage portal protein	portal	A0A0A8WFC0	Clostridium_phage	99.8	5.3e-279
AWH81032.1|1770832_1772326_+|head	phage head morphogenesis protein	head	X5JAI9	Clostridium_phage	96.8	1.1e-284
AWH83302.1|1772303_1772534_+	hypothetical protein	NA	X5JAV8	Clostridium_phage	100.0	1.8e-35
AWH81033.1|1772843_1773407_+	scaffolding protein	NA	X5JAB4	Clostridium_phage	89.3	3.0e-84
AWH81034.1|1773418_1774318_+|capsid	capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	100.0	2.8e-169
AWH81035.1|1774317_1774551_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	96.1	3.2e-32
AWH81036.1|1774560_1774962_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
AWH81037.1|1774955_1775303_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
AWH81038.1|1775302_1775728_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	97.9	3.2e-75
AWH81039.1|1775720_1776158_+	hypothetical protein	NA	X5JAB5	Clostridium_phage	92.4	2.8e-74
AWH81040.1|1776150_1776327_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	91.4	5.5e-21
AWH81041.1|1776327_1777638_+|tail	phage tail protein	tail	X5JAJ1	Clostridium_phage	94.0	7.3e-235
AWH81042.1|1777654_1778125_+	hypothetical protein	NA	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
AWH81043.1|1778196_1778637_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
AWH81044.1|1778636_1778831_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81045.1|1778977_1779139_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
AWH81046.1|1780286_1781039_+	SHOCT domain-containing protein	NA	A0A090DCP8	Clostridium_phage	51.6	6.2e-61
AWH81047.1|1781342_1781516_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
AWH83303.1|1782071_1782467_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	88.4	9.4e-61
AWH81048.1|1783104_1783683_+	zinc ribbon domain-containing protein	NA	A0A0A8WFW4	Clostridium_phage	90.3	3.8e-87
AWH81049.1|1783758_1786125_+	hypothetical protein	NA	A0A0A8WJT6	Clostridium_phage	71.3	1.3e-282
AWH81050.1|1786140_1786842_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WFE5	Clostridium_phage	93.5	8.4e-121
AWH81051.1|1786834_1788799_+	cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	86.1	6.1e-310
AWH81052.1|1788812_1789073_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	96.5	2.5e-38
AWH81053.1|1789077_1789497_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	98.6	3.9e-73
AWH81054.1|1789497_1790544_+|tail	phage tail protein	tail	X5JAB8	Clostridium_phage	94.2	2.6e-182
AWH81055.1|1790536_1791154_+	DUF2313 domain-containing protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
AWH81056.1|1791165_1792158_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	94.1	1.5e-160
AWH81057.1|1793907_1794255_+	hypothetical protein	NA	A3QSB8	Clostridium_virus	100.0	5.5e-57
AWH81058.1|1794467_1795034_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	78.7	1.2e-37
AWH81059.1|1795064_1795355_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	100.0	6.3e-46
AWH81060.1|1795358_1795616_+|holin	holin	holin	A0A0A8WF70	Clostridium_phage	95.3	6.6e-39
AWH81061.1|1796817_1797630_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0K2SUC5	Clostridium_phage	94.4	1.3e-149
AWH81062.1|1797786_1800078_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
AWH81063.1|1800119_1800305_-	PemI	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
1801654:1801681	attR	TAGAATAATATTACAACTTAAGTAAATA	NA	NA	NA	NA
>prophage 6
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	2556288	2570429	4295210	holin,integrase	Clostridium_phage(71.43%)	18	2562606:2562622	2577323:2577339
AWH81729.1|2556288_2557035_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WHU0	Clostridium_phage	67.5	3.9e-84
AWH81730.1|2557034_2557292_-|holin	holin	holin	A0A0A8WF70	Clostridium_phage	83.5	7.5e-35
AWH81731.1|2557311_2557542_-	hypothetical protein	NA	A0A0A8WEZ7	Clostridium_phage	97.4	4.8e-33
AWH81732.1|2557599_2559147_-	hypothetical protein	NA	B6SBV0	Clostridium_virus	75.7	7.2e-181
AWH81733.1|2559281_2559464_-	hypothetical protein	NA	J9QDY8	Clostridium_phage	90.0	1.2e-23
AWH81734.1|2559769_2561263_-	hypothetical protein	NA	J9QE87	Clostridium_phage	55.2	6.0e-108
AWH81735.1|2561278_2561626_-	hypothetical protein	NA	J9QED3	Clostridium_phage	68.5	1.9e-20
AWH83320.1|2561613_2562897_-	DUF2313 domain-containing protein	NA	A0A0A8WFK0	Clostridium_phage	81.3	5.7e-131
2562606:2562622	attL	CAGCAGTTTCAAGACCA	NA	NA	NA	NA
AWH81736.1|2563272_2563707_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81737.1|2563794_2565354_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	52.0	1.9e-72
AWH81738.1|2565558_2565999_+	hypothetical protein	NA	A0A0A8WIE1	Clostridium_phage	69.8	1.9e-54
AWH81739.1|2566040_2566700_+|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	55.0	3.7e-62
AWH81740.1|2567667_2568045_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJU1	Clostridium_phage	91.2	3.6e-54
AWH81741.1|2568604_2568793_-	hypothetical protein	NA	NA	NA	NA	NA
AWH81742.1|2568953_2569304_+	DUF3796 domain-containing protein	NA	NA	NA	NA	NA
AWH81743.1|2569305_2569506_+	transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	3.7e-05
AWH81744.1|2569828_2570005_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81745.1|2570228_2570429_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	71.4	2.0e-19
2577323:2577339	attR	TGGTCTTGAAACTGCTG	NA	NA	NA	NA
>prophage 7
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	2808767	2817357	4295210	holin	Clostridium_phage(66.67%)	11	NA	NA
AWH81952.1|2808767_2809151_-	transcriptional regulator	NA	A0A090DCS9	Clostridium_phage	89.8	4.1e-61
AWH81953.1|2809530_2809707_+	hypothetical protein	NA	NA	NA	NA	NA
AWH81954.1|2809932_2810133_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
AWH81955.1|2810563_2811901_+	ATP-binding protein	NA	X5JAC0	Clostridium_phage	59.9	1.3e-138
AWH81956.1|2811943_2812525_+	accessory regulator	NA	X5JB40	Clostridium_phage	49.2	1.0e-42
AWH81957.1|2812542_2812704_+	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
AWH81958.1|2812725_2813523_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WE15	Clostridium_phage	90.7	1.1e-140
AWH81959.1|2813519_2813780_-|holin	holin	holin	A3QSC5	Clostridium_virus	77.6	7.9e-32
AWH81960.1|2814649_2814808_-	hypothetical protein	NA	J9QED5	Clostridium_phage	63.5	1.6e-08
AWH81961.1|2815165_2816536_-	cell wall-binding protein Cwp29	NA	A0A2R2ZGK6	Clostridioides_phage	43.9	1.6e-70
AWH81962.1|2816934_2817357_+	hypothetical protein	NA	X5JB41	Clostridium_phage	69.8	4.4e-48
>prophage 8
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	3017468	3077283	4295210	transposase,holin,integrase,head,portal,plate,tail	Clostridium_phage(96.59%)	93	3015757:3015774	3083374:3083391
3015757:3015774	attL	TAATTTTTCTAAATCTTT	NA	NA	NA	NA
AWH82132.1|3017468_3017996_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.0	4.2e-08
AWH82133.1|3018224_3019301_+	aminotransferase	NA	NA	NA	NA	NA
AWH82134.1|3019387_3020596_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
AWH82135.1|3020946_3021330_-	transcriptional regulator	NA	A0A090DCS9	Clostridium_phage	100.0	3.5e-68
AWH82136.1|3021856_3022000_-	hypothetical protein	NA	A0A0A8WJ06	Clostridium_phage	100.0	3.9e-17
AWH82137.1|3022261_3022450_+	hypothetical protein	NA	X5JA01	Clostridium_phage	100.0	1.8e-30
AWH82138.1|3022698_3023403_-	hypothetical protein	NA	Q24LF8	Clostridium_phage	97.0	9.8e-69
AWH82139.1|3023404_3023836_-	hypothetical protein	NA	Q24LG0	Clostridium_phage	100.0	1.9e-75
AWH82140.1|3023853_3024450_-	hypothetical protein	NA	Q24LG1	Clostridium_phage	99.5	1.8e-95
AWH82141.1|3024962_3025259_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	98.0	1.8e-48
AWH82142.1|3025275_3026091_-	N-acetylmuramoyl-L-alanine amidase	NA	Q24LG3	Clostridium_phage	99.6	2.3e-154
AWH82143.1|3026090_3026348_-|holin	holin	holin	Q24LG4	Clostridium_phage	100.0	1.1e-41
AWH82144.1|3026367_3026598_-	hypothetical protein	NA	Q24LG5	Clostridium_phage	100.0	9.7e-34
AWH82145.1|3026633_3026816_-	hypothetical protein	NA	Q24LG6	Clostridium_phage	100.0	7.7e-26
AWH82146.1|3026815_3028087_-	hypothetical protein	NA	A0A0K2SU84	Clostridium_phage	61.6	5.6e-131
AWH82147.1|3028104_3028884_-|tail	phage tail protein	tail	A0A0A8WES5	Clostridium_phage	98.8	1.2e-123
AWH82148.1|3028900_3029509_-	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	100.0	4.0e-111
AWH82149.1|3029508_3030561_-|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	100.0	2.3e-194
AWH82150.1|3030553_3030982_-	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	100.0	1.0e-76
AWH82151.1|3030981_3031308_-	DUF2577 domain-containing protein	NA	A0A0A8WIB5	Clostridium_phage	100.0	8.3e-55
AWH82152.1|3031323_3032844_-	cell wall hydrolase	NA	A0A090DCQ7	Clostridium_phage	100.0	1.4e-293
AWH82153.1|3033102_3033345_-	hypothetical protein	NA	A0A090D811	Clostridium_phage	100.0	7.0e-43
AWH83333.1|3033365_3033563_-	hypothetical protein	NA	A0A090D836	Clostridium_phage	100.0	9.8e-35
AWH82154.1|3033652_3034288_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A090DBR9	Clostridium_phage	99.5	2.9e-120
AWH82155.1|3034305_3034497_-	hypothetical protein	NA	A0A090EUD7	Clostridium_phage	100.0	2.5e-27
AWH82156.1|3034630_3034780_-	hypothetical protein	NA	J9QED5	Clostridium_phage	62.5	2.2e-07
AWH83334.1|3035241_3035808_-	SHOCT domain-containing protein	NA	A0A090DCP8	Clostridium_phage	100.0	7.9e-77
AWH82157.1|3036064_3038899_-|tail	phage tail tape measure protein	tail	A0A090D808	Clostridium_phage	95.4	2.4e-238
AWH82158.1|3039075_3039546_-	hypothetical protein	NA	A0A090EUD0	Clostridium_phage	100.0	9.7e-81
AWH82159.1|3039577_3040009_-	hypothetical protein	NA	A0A090DCP2	Clostridium_phage	99.3	1.6e-74
AWH82160.1|3040023_3041094_-|tail	phage tail sheath protein	tail	A0A090D804	Clostridium_phage	100.0	7.6e-190
AWH82161.1|3041094_3041547_-	hypothetical protein	NA	A0A090D829	Clostridium_phage	100.0	4.6e-80
AWH82162.1|3041557_3041968_-	HK97 gp10 family phage protein	NA	A0A090DBQ6	Clostridium_phage	100.0	1.5e-72
AWH82163.1|3041968_3042319_-	hypothetical protein	NA	A0A090EUC2	Clostridium_phage	100.0	9.8e-62
AWH82164.1|3042320_3042671_-	hypothetical protein	NA	A0A090DCN6	Clostridium_phage	100.0	1.8e-55
AWH82165.1|3042699_3042921_-	transcription termination factor Rho	NA	A0A090D801	Clostridium_phage	100.0	1.3e-30
AWH82166.1|3042933_3043872_-	hypothetical protein	NA	A0A090D825	Clostridium_phage	100.0	3.8e-177
AWH82167.1|3043895_3044492_-	hypothetical protein	NA	A0A090DBQ0	Clostridium_phage	100.0	4.2e-81
AWH82168.1|3044612_3044843_-	hypothetical protein	NA	A0A090EUB5	Clostridium_phage	100.0	7.2e-37
AWH82169.1|3044884_3045079_-	hypothetical protein	NA	A0A090DCN1	Clostridium_phage	100.0	7.9e-21
AWH82170.1|3045797_3046838_-|head	phage head morphogenesis protein	head	A0A090D822	Clostridium_phage	100.0	1.3e-194
AWH82171.1|3046850_3048206_-|portal	phage portal protein	portal	A0A090DBP3	Clostridium_phage	100.0	5.8e-259
AWH82172.1|3048220_3050617_-	hypothetical protein	NA	A0A090EUA8	Clostridium_phage	98.2	0.0e+00
AWH82173.1|3050606_3051059_-|transposase	transposase	transposase	A0A090DCM3	Clostridium_phage	100.0	1.9e-81
AWH83335.1|3051124_3051424_-	hypothetical protein	NA	A0A090DC14	Clostridium_phage	100.0	2.9e-46
AWH82174.1|3051731_3052676_-	DUF4868 domain-containing protein	NA	Q24LC1	Clostridium_phage	100.0	1.9e-176
AWH82175.1|3052781_3053099_+	hypothetical protein	NA	A0A090DD01	Clostridium_phage	100.0	4.4e-53
AWH82176.1|3053078_3053267_-	hypothetical protein	NA	A0A0A8WIH0	Clostridium_phage	100.0	3.2e-27
AWH82177.1|3053343_3053955_-	N-acetyltransferase	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
AWH82178.1|3053954_3054149_-	hypothetical protein	NA	A0A090DC11	Clostridium_phage	100.0	5.7e-27
AWH82179.1|3054875_3055364_-	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	100.0	6.1e-86
AWH82180.1|3055457_3056183_-	phage antirepressor Ant	NA	A0A090DCZ8	Clostridium_phage	99.6	1.3e-129
AWH82181.1|3056197_3056605_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0A8WIA1	Clostridium_phage	85.9	3.3e-61
AWH82182.1|3056618_3057425_-	SAM-dependent methyltransferase	NA	Q24LC8	Clostridium_phage	99.6	2.9e-157
AWH82183.1|3057421_3057535_-	hypothetical protein	NA	A0A0A8WF38	Clostridium_phage	91.9	2.3e-12
AWH82184.1|3057553_3057802_-	hypothetical protein	NA	Q24LC9	Clostridium_phage	100.0	1.4e-41
AWH82185.1|3057806_3057992_-	hypothetical protein	NA	Q24LD0	Clostridium_phage	100.0	5.4e-27
AWH82186.1|3058070_3058538_-	hypothetical protein	NA	Q24LD1	Clostridium_phage	100.0	4.8e-72
AWH82187.1|3058540_3058912_-	hypothetical protein	NA	Q24LD2	Clostridium_phage	100.0	9.1e-66
AWH82188.1|3058904_3059078_-	hypothetical protein	NA	Q24LD3	Clostridium_phage	100.0	1.3e-27
AWH82189.1|3059074_3059800_-	reductase	NA	Q24LD4	Clostridium_phage	99.1	2.4e-131
AWH82190.1|3059808_3060804_-	nucleoid-associated protein	NA	A0A090D855	Clostridium_phage	81.7	2.9e-151
AWH82191.1|3060800_3061022_-	hypothetical protein	NA	A0A0A8WJQ5	Clostridium_phage	98.6	1.2e-33
AWH82192.1|3061039_3061735_-	hypothetical protein	NA	NA	NA	NA	NA
AWH82193.1|3061875_3062892_-	DNA (cytosine-5-)-methyltransferase	NA	A0A0A8WFL3	Clostridium_phage	99.7	2.9e-199
AWH82194.1|3062999_3063335_-	hypothetical protein	NA	Q24LD9	Clostridium_phage	100.0	3.5e-56
AWH82195.1|3063334_3063508_-	DUF3797 domain-containing protein	NA	Q24LE0	Clostridium_phage	100.0	1.9e-29
AWH82196.1|3063504_3063663_-	hypothetical protein	NA	X5JB46	Clostridium_phage	100.0	3.9e-18
AWH83336.1|3063637_3063784_-	hypothetical protein	NA	X5JAX0	Clostridium_phage	100.0	4.7e-18
AWH82197.1|3063767_3064148_-	hypothetical protein	NA	X5JAK1	Clostridium_phage	100.0	5.7e-63
AWH83337.1|3064151_3064502_-	hypothetical protein	NA	X5JA06	Clostridium_phage	99.1	3.1e-63
AWH82198.1|3064513_3064777_-	hypothetical protein	NA	Q24LE3	Clostridium_phage	98.9	4.5e-43
AWH82199.1|3064850_3065105_-	hypothetical protein	NA	Q24LE4	Clostridium_phage	100.0	5.5e-46
AWH82200.1|3065179_3065587_-	single-stranded DNA-binding protein	NA	A0A0A8WIK6	Clostridium_phage	100.0	7.6e-74
AWH82201.1|3065603_3065777_-	resolvase	NA	A0A090EUJ6	Clostridium_phage	100.0	5.8e-23
AWH82202.1|3065836_3066718_-	DnaD domain protein	NA	Q24LE6	Clostridium_phage	99.7	5.2e-160
AWH82203.1|3066727_3067336_-	recombinase	NA	Q24LE7	Clostridium_phage	100.0	3.0e-106
AWH82204.1|3067345_3067855_-	hypothetical protein	NA	A0A0A8WJQ2	Clostridium_phage	100.0	2.7e-84
AWH82205.1|3067937_3068183_-	hypothetical protein	NA	X5JAW8	Clostridium_phage	81.5	1.7e-28
AWH82206.1|3068172_3068355_-	hypothetical protein	NA	NA	NA	NA	NA
AWH82207.1|3068487_3068817_-	DNA-binding protein	NA	A0A090D837	Clostridium_phage	84.4	1.6e-42
AWH82208.1|3068833_3069031_-	XRE family transcriptional regulator	NA	A0A090D859	Clostridium_phage	96.9	4.7e-29
AWH82209.1|3069083_3069284_+	hypothetical protein	NA	A0A090DBW4	Clostridium_phage	98.5	2.4e-28
AWH82210.1|3069746_3070499_-	phage antirepressor Ant	NA	A0A090D834	Clostridium_phage	63.6	2.1e-61
AWH82211.1|3070491_3070671_-	hypothetical protein	NA	A0A0A8WJW4	Clostridium_phage	56.4	2.9e-09
AWH82212.1|3070806_3070986_+	Arc family DNA-binding protein	NA	A0A0A8WG21	Clostridium_phage	76.4	5.1e-14
AWH82213.1|3071172_3071961_-	phage regulatory protein	NA	B6SBX3	Clostridium_virus	87.0	2.8e-120
AWH82214.1|3072614_3072824_-	transcriptional regulator	NA	A0A090DCT3	Clostridium_phage	100.0	6.3e-32
AWH82215.1|3073000_3073396_+	XRE family transcriptional regulator	NA	A0A090D830	Clostridium_phage	100.0	6.7e-67
AWH82216.1|3074043_3074445_+	HicB family protein	NA	A0A090DBV2	Clostridium_phage	100.0	7.0e-72
AWH82217.1|3074503_3075622_+|integrase	site-specific integrase	integrase	A0A090EUH1	Clostridium_phage	100.0	2.3e-205
AWH82218.1|3075788_3076178_-	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AWH82219.1|3076281_3077283_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	42.3	1.8e-60
3083374:3083391	attR	AAAGATTTAGAAAAATTA	NA	NA	NA	NA
>prophage 9
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	3176911	3185864	4295210		Catovirus(50.0%)	8	NA	NA
AWH82294.1|3176911_3178825_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
AWH82295.1|3178908_3180000_-	glycosyltransferase family 4 protein	NA	A0A1V0SL50	Klosneuvirus	26.2	2.3e-16
AWH83338.1|3180005_3181301_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.4	4.9e-90
AWH82296.1|3181326_3182079_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
AWH82297.1|3182126_3183035_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AWH82298.1|3183056_3183806_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
AWH82299.1|3183834_3185025_-	glycerophosphotransferase	NA	NA	NA	NA	NA
AWH82300.1|3185024_3185864_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 10
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	3627293	3663851	4295210	capsid,holin,integrase,head,terminase,portal,plate,tail,protease	Clostridium_phage(79.49%)	47	3652169:3652186	3672979:3672996
AWH82633.1|3627293_3629321_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	24.0	2.6e-21
AWH82634.1|3629782_3630262_+	hypothetical protein	NA	NA	NA	NA	NA
AWH82635.1|3630290_3631103_-	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	93.3	4.2e-148
AWH82636.1|3631102_3631360_-|holin	holin	holin	A0A0K2SUI8	Clostridium_phage	91.8	2.0e-40
AWH82637.1|3631379_3631610_-	hypothetical protein	NA	A0A0A8WJR7	Clostridium_phage	97.4	2.8e-33
AWH82638.1|3631680_3632214_-	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	83.8	1.7e-28
AWH82639.1|3632247_3632430_-	hypothetical protein	NA	J9QE73	Clostridium_phage	95.0	7.2e-24
AWH82640.1|3632429_3632723_-	hypothetical protein	NA	J9QE35	Clostridium_phage	91.8	2.7e-44
AWH82641.1|3632736_3634434_-	hypothetical protein	NA	A0A090EUF1	Clostridium_phage	59.9	1.7e-135
AWH82642.1|3634450_3635452_-|tail	phage tail protein	tail	A0A1V0DZY8	Clostridioides_phage	80.5	6.4e-114
AWH82643.1|3635453_3636071_-	DUF2313 domain-containing protein	NA	J9QD29	Clostridium_phage	87.8	6.5e-101
AWH82644.1|3636067_3637123_-|plate	baseplate protein J	plate	A0A0A8WFP3	Clostridium_phage	94.3	1.9e-185
AWH82645.1|3637115_3637544_-	DUF2634 domain-containing protein	NA	J9QE34	Clostridium_phage	93.7	2.0e-72
AWH82646.1|3637543_3637870_-	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	90.7	1.2e-48
AWH82647.1|3637885_3639403_-	cell wall hydrolase	NA	A0A0K2SUC1	Clostridium_phage	88.6	1.3e-254
AWH82648.1|3639642_3640278_-	LysM peptidoglycan-binding domain-containing protein	NA	J9QDY6	Clostridium_phage	97.6	1.6e-118
AWH82649.1|3640277_3642032_-	hypothetical protein	NA	A0A0K2SUF9	Clostridium_phage	92.3	2.4e-225
AWH82650.1|3642215_3642599_-|portal	phage portal protein	portal	J9QED1	Clostridium_phage	100.0	6.8e-56
AWH82651.1|3642647_3643097_-|terminase	terminase	terminase	A0A0A8WF55	Clostridium_phage	93.3	1.4e-76
AWH82652.1|3643109_3644177_-|tail	phage tail sheath protein	tail	J9QDY5	Clostridium_phage	95.8	4.6e-187
AWH82653.1|3644191_3644608_-	hypothetical protein	NA	A0A0K2SUF6	Clostridium_phage	94.9	1.1e-64
AWH82654.1|3644619_3645033_-	hypothetical protein	NA	A0A0K2SUA7	Clostridium_phage	94.2	2.2e-68
AWH82655.1|3645025_3645364_-|head,tail	head-tail adaptor protein	head,tail	A0A0A8WI51	Clostridium_phage	98.2	9.8e-59
AWH82656.1|3645365_3645653_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0A8WF50	Clostridium_phage	95.8	3.2e-42
AWH82657.1|3645662_3646931_-|capsid	phage major capsid protein	capsid	A0A0K2SUH4	Clostridium_phage	97.9	2.8e-231
AWH82658.1|3646923_3647661_-|protease	Clp protease ClpP	protease	A0A0A8WFM9	Clostridium_phage	88.6	1.5e-123
AWH82659.1|3647666_3648821_-|portal	phage portal protein	portal	J9QE83	Clostridium_phage	93.5	2.4e-205
AWH82660.1|3648836_3650486_-|terminase	terminase large subunit	terminase	A0A0A8WI49	Clostridium_phage	94.9	0.0e+00
AWH82661.1|3650482_3650872_-	hypothetical protein	NA	A0A090C9N7	Clostridium_phage	100.0	3.2e-61
AWH82662.1|3650969_3651263_-	HNH endonuclease	NA	J9QDZ3	Clostridium_phage	91.8	5.2e-48
AWH82663.1|3651255_3651549_-	hypothetical protein	NA	J9QE40	Clostridium_phage	48.9	8.3e-14
AWH82664.1|3651745_3652345_-|integrase	integrase	integrase	A0A0A8WF93	Clostridium_phage	89.8	6.8e-79
3652169:3652186	attL	TCTTTTTAAAGCTTCTTT	NA	NA	NA	NA
AWH82665.1|3652631_3653459_-	hypothetical protein	NA	NA	NA	NA	NA
AWH82666.1|3653830_3654343_-	transcriptional regulator	NA	A0A1V0E028	Clostridioides_phage	45.2	3.6e-28
AWH82667.1|3654528_3654822_-	hypothetical protein	NA	NA	NA	NA	NA
AWH82668.1|3654835_3655093_-	hypothetical protein	NA	NA	NA	NA	NA
AWH82669.1|3655082_3655712_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA	NA
AWH82670.1|3655726_3657061_-	helicase	NA	A0A222ZRG2	Mycobacterium_phage	28.2	7.2e-28
AWH82671.1|3657075_3657840_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	29.4	8.0e-24
AWH82672.1|3657863_3658094_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AWH82673.1|3658105_3658543_-	XRE family transcriptional regulator	NA	A0A1L2BY71	Clostridium_phage	38.2	1.3e-15
AWH82674.1|3658570_3658789_-	transcriptional regulator	NA	NA	NA	NA	NA
AWH82675.1|3658953_3659301_+	XRE family transcriptional regulator	NA	A0A090D830	Clostridium_phage	34.8	1.0e-10
AWH82676.1|3659347_3660508_-	endonuclease	NA	A0A1S5SAB0	Streptococcus_phage	54.1	3.2e-64
AWH82677.1|3661261_3661483_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AWH82678.1|3661530_3662709_+|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	31.0	2.6e-37
AWH82679.1|3663359_3663851_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	54.5	3.7e-38
3672979:3672996	attR	TCTTTTTAAAGCTTCTTT	NA	NA	NA	NA
>prophage 11
CP029154	Clostridioides difficile strain CD161 chromosome, complete genome	4295210	3869599	3891058	4295210		Streptococcus_phage(91.67%)	32	NA	NA
AWH82851.1|3869599_3869926_+	DUF961 domain-containing protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
AWH82852.1|3869941_3870325_+	DUF961 domain-containing protein	NA	A0A1S5SF96	Streptococcus_phage	57.6	5.2e-32
AWH82853.1|3870492_3870900_+	XRE family transcriptional regulator	NA	A0A0A7AQV8	Bacillus_phage	42.3	1.2e-05
AWH82854.1|3870915_3871242_+	hypothetical protein	NA	NA	NA	NA	NA
AWH82855.1|3871342_3872737_+	ATP-binding protein	NA	A0A1S5SFB5	Streptococcus_phage	66.2	1.9e-177
AWH82856.1|3872920_3874117_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.5	7.3e-149
AWH82857.1|3874119_3874224_+	hypothetical protein	NA	NA	NA	NA	NA
AWH82858.1|3874264_3874486_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
AWH82859.1|3874689_3875466_+	XRE family transcriptional regulator	NA	W6LMS6	Streptococcus_phage	46.6	4.9e-05
AWH82860.1|3875550_3875847_+	conjugal transfer protein	NA	NA	NA	NA	NA
AWH82861.1|3875765_3876269_+	antirestriction protein	NA	NA	NA	NA	NA
AWH82862.1|3876286_3876790_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.4	3.4e-55
AWH82863.1|3876907_3877306_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
AWH82864.1|3877283_3879734_+	ATP/GTP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
AWH82865.1|3879733_3881929_+	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	68.6	4.4e-176
AWH82866.1|3881925_3882933_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	69.9	3.0e-135
AWH82867.1|3882948_3883860_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.8	1.2e-82
AWH82868.1|3883980_3884358_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AWH82869.1|3884358_3885222_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.3e-18
AWH82870.1|3885218_3885863_+	ABC-2 transporter permease	NA	NA	NA	NA	NA
AWH82871.1|3885875_3886067_+	nucleic acid-binding protein	NA	NA	NA	NA	NA
AWH82872.1|3886271_3886460_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	57.9	8.2e-15
AWH82873.1|3886567_3886927_-	XRE family transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	45.0	2.3e-21
AWH82874.1|3887113_3887329_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	98.6	1.4e-31
AWH82875.1|3887345_3887618_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
AWH82876.1|3887619_3887778_+	zeta-toxin	NA	NA	NA	NA	NA
AWH82877.1|3888295_3889033_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
AWH82878.1|3889037_3889169_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	90.7	8.2e-14
AWH83360.1|3889178_3889463_+	topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	93.0	2.3e-40
AWH82879.1|3889565_3890462_+	chromosome partitioning protein ParA	NA	A0A1X9I765	Streptococcus_phage	99.6	5.1e-155
AWH82880.1|3890553_3890769_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
AWH82881.1|3890785_3891058_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
>prophage 1
CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	130529	92	72534	130529	integrase	Clostridium_phage(53.57%)	96	1340:1361	58639:58660
AWH83377.1|92_695_-	hypothetical protein	NA	A0A0A8WF28	Clostridium_phage	94.0	2.3e-106
AWH83521.1|1239_1500_-	DUF5052 domain-containing protein	NA	A0A2R2ZGR4	Clostridioides_phage	56.7	5.8e-19
1340:1361	attL	TCTTTATCTGAATATTTTTTTA	NA	NA	NA	NA
AWH83378.1|1599_2052_-	hypothetical protein	NA	A0A2R2ZGR6	Clostridioides_phage	99.2	2.2e-74
AWH83379.1|2063_2414_-	hypothetical protein	NA	A0A2R2ZGT0	Clostridioides_phage	97.4	3.0e-58
AWH83380.1|2440_2623_-	hypothetical protein	NA	A0A2R2ZGR1	Clostridioides_phage	100.0	3.7e-28
AWH83381.1|2615_2825_-	hypothetical protein	NA	A0A2R2ZGQ9	Clostridioides_phage	98.6	1.1e-31
AWH83382.1|3045_3276_-	hypothetical protein	NA	A0A2R2ZGQ8	Clostridioides_phage	100.0	1.1e-37
AWH83383.1|3293_3656_-	hypothetical protein	NA	A0A2R2ZGR5	Clostridioides_phage	100.0	5.8e-65
AWH83384.1|3846_4026_-	hypothetical protein	NA	A0A2R2ZGS3	Clostridioides_phage	100.0	3.4e-26
AWH83385.1|4392_5646_-	RNA-splicing ligase RtcB	NA	A0A2R2ZGS4	Clostridioides_phage	100.0	2.3e-225
AWH83386.1|5698_6058_-	hypothetical protein	NA	A0A2R2ZGS5	Clostridioides_phage	100.0	2.0e-62
AWH83387.1|6077_6545_-	hypothetical protein	NA	A0A2R2ZGU1	Clostridioides_phage	100.0	5.7e-81
AWH83388.1|6736_7087_-	hypothetical protein	NA	A0A2R2ZGR8	Clostridioides_phage	100.0	2.2e-61
AWH83389.1|7659_8106_-	hypothetical protein	NA	A0A2R2ZGS9	Clostridioides_phage	100.0	2.7e-80
AWH83390.1|8303_8684_-	hypothetical protein	NA	A0A2R2ZGS6	Clostridioides_phage	99.2	3.2e-66
AWH83391.1|8719_9187_-	hypothetical protein	NA	A0A2R2ZGT1	Clostridioides_phage	100.0	9.3e-84
AWH83392.1|9215_9326_-	acyltransferase	NA	A0A2R2ZGT2	Clostridioides_phage	100.0	5.8e-13
AWH83393.1|9312_9657_-	hypothetical protein	NA	A0A2R2ZGT3	Clostridioides_phage	100.0	2.9e-58
AWH83394.1|10076_10445_-	hypothetical protein	NA	A0A2R2ZGV1	Clostridioides_phage	100.0	1.0e-61
AWH83395.1|10465_11002_-	hypothetical protein	NA	A0A2R2ZGS8	Clostridioides_phage	100.0	1.6e-103
AWH83396.1|11021_11417_-	hypothetical protein	NA	A0A2R2ZGS7	Clostridioides_phage	100.0	4.5e-63
AWH83397.1|11420_12434_-	hypothetical protein	NA	A0A2R2ZGT9	Clostridioides_phage	97.9	1.0e-196
AWH83398.1|12793_13156_-	hypothetical protein	NA	A0A2R2ZGN2	Clostridioides_phage	73.4	1.1e-39
AWH83399.1|13193_15374_-	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	A0A2R2ZGN9	Clostridioides_phage	95.3	0.0e+00
AWH83400.1|15412_15916_-	hypothetical protein	NA	A0A0A8WI18	Clostridium_phage	98.8	1.8e-85
AWH83401.1|16016_16418_-	DNA ligase	NA	A0A0A8WIS9	Clostridium_phage	99.2	3.4e-66
AWH83402.1|16471_16822_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83403.1|16983_17994_-	nucleotidyltransferase	NA	H7BUW2	unidentified_phage	46.9	8.8e-79
AWH83404.1|18060_19173_-	hypothetical protein	NA	A0A1B1IPS3	uncultured_Mediterranean_phage	27.2	9.2e-13
AWH83522.1|19175_19601_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AWH83523.1|19916_20840_-	hypothetical protein	NA	H7BVI6	unidentified_phage	51.4	7.6e-37
AWH83405.1|20891_21212_-	hypothetical protein	NA	A0A0A8WJJ0	Clostridium_phage	95.3	3.5e-58
AWH83406.1|21271_21661_-	hypothetical protein	NA	A0A0A8WEK3	Clostridium_phage	97.7	1.2e-68
AWH83407.1|21698_22103_-	hypothetical protein	NA	A0A0A8WI20	Clostridium_phage	97.8	7.8e-71
AWH83408.1|22916_23168_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83409.1|23278_23545_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83410.1|23688_24231_-	RNA 2'-phosphotransferase	NA	A0A0A8WJJ2	Clostridium_phage	91.1	2.2e-92
AWH83411.1|24423_24846_-	DUF3850 domain-containing protein	NA	A0A0A8WI22	Clostridium_phage	100.0	2.2e-76
AWH83412.1|24869_25103_-	hypothetical protein	NA	A0A0A8WIT3	Clostridium_phage	98.7	4.5e-39
AWH83413.1|25262_25799_-	hypothetical protein	NA	A0A0A8WJJ4	Clostridium_phage	98.8	3.0e-86
AWH83414.1|25822_26047_-	hypothetical protein	NA	A0A0A8WEL1	Clostridium_phage	97.3	7.2e-34
AWH83415.1|26110_26905_-	hypothetical protein	NA	A0A0A8WI24	Clostridium_phage	85.1	5.6e-129
AWH83416.1|27242_27575_+	XRE family transcriptional regulator	NA	A0A0A8WEL4	Clostridium_phage	36.9	1.0e-12
AWH83417.1|28048_28387_+	XRE family transcriptional regulator	NA	A0A0A8WEL4	Clostridium_phage	100.0	9.2e-57
AWH83418.1|29300_30479_-	hypothetical protein	NA	A0A0A8WF68	Clostridium_phage	96.9	6.0e-212
AWH83419.1|30554_30821_-	helix-turn-helix domain containing protein	NA	A0A0A8WJJ9	Clostridium_phage	86.4	6.4e-37
AWH83420.1|31294_32863_-	hypothetical protein	NA	A0A0A8WI31	Clostridium_phage	100.0	1.5e-295
AWH83421.1|32867_33794_-	hypothetical protein	NA	A0A0A8WIU3	Clostridium_phage	99.4	4.5e-170
AWH83422.1|33925_34498_-|integrase	integrase	integrase	A0A2R2ZHA6	Clostridioides_phage	87.9	2.9e-87
AWH83423.1|34606_34789_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83424.1|34965_35457_-	XRE family transcriptional regulator	NA	A0A0A8WJK5	Clostridium_phage	67.3	7.6e-28
AWH83425.1|35468_36893_-	hypothetical protein	NA	A0A2R2ZHF2	Clostridioides_phage	71.5	7.6e-177
AWH83426.1|36989_37553_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83427.1|37705_38203_-	hypothetical protein	NA	A0A0A8WF85	Clostridium_phage	94.5	2.0e-84
AWH83428.1|38407_38659_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83429.1|38809_39130_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83430.1|39434_40046_-	hypothetical protein	NA	A0A2R2ZHC6	Clostridioides_phage	99.5	4.2e-116
AWH83431.1|40107_40344_-	hypothetical protein	NA	A0A2R2ZHE8	Clostridioides_phage	94.9	1.8e-35
AWH83432.1|40569_40827_-	hypothetical protein	NA	A0A2R2ZGX6	Clostridioides_phage	98.8	2.8e-42
AWH83433.1|40982_41177_-	XRE family transcriptional regulator	NA	A0A0A8WF92	Clostridium_phage	61.9	6.1e-13
AWH83434.1|41274_41586_-	hypothetical protein	NA	A0A2R2ZGW8	Clostridioides_phage	79.8	1.2e-13
AWH83435.1|41876_42080_-	XRE family transcriptional regulator	NA	A0A0A8WF92	Clostridium_phage	67.2	2.6e-14
AWH83436.1|42176_42479_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83437.1|42492_42795_-	hypothetical protein	NA	A0A2R2ZGZ0	Clostridioides_phage	100.0	7.8e-07
AWH83438.1|43372_43684_+	XRE family transcriptional regulator	NA	A0A0A8WIV9	Clostridium_phage	100.0	2.2e-49
AWH83439.1|43897_44089_-	XRE family transcriptional regulator	NA	A0A0A8WF95	Clostridium_phage	100.0	1.2e-26
AWH83440.1|44996_45185_+	hypothetical protein	NA	A0A0A8WEP6	Clostridium_phage	100.0	1.1e-27
AWH83441.1|45606_46521_+	hypothetical protein	NA	A0A0A8WI45	Clostridium_phage	99.3	9.2e-168
AWH83442.1|46533_46806_+	hypothetical protein	NA	A0A0A8WIW1	Clostridium_phage	91.1	4.1e-39
AWH83443.1|47078_47942_+	hypothetical protein	NA	A0A0A8WF99	Clostridium_phage	99.0	9.9e-164
AWH83444.1|48119_48368_+	hypothetical protein	NA	A0A0A8WEQ0	Clostridium_phage	98.8	2.8e-39
AWH83445.1|48370_49813_+	hypothetical protein	NA	A0A0A8WI47	Clostridium_phage	99.6	1.7e-264
AWH83446.1|49946_50225_+	hypothetical protein	NA	A0A0A8WIW3	Clostridium_phage	100.0	1.2e-41
AWH83447.1|50315_50933_+	hypothetical protein	NA	A0A0A8WFA1	Clostridium_phage	99.5	1.5e-105
AWH83448.1|51302_51491_+	hypothetical protein	NA	A0A2R2ZGZ1	Clostridioides_phage	79.0	2.9e-20
AWH83449.1|51567_52767_+	hypothetical protein	NA	A0A0A8WJL5	Clostridium_phage	96.7	2.7e-220
AWH83450.1|52897_53797_+	hypothetical protein	NA	A0A0A8WEC3	Clostridium_phage	99.0	6.9e-168
AWH83451.1|53786_55535_+	hypothetical protein	NA	A0A0A8WHX2	Clostridium_phage	99.8	0.0e+00
AWH83452.1|55551_57030_+	hypothetical protein	NA	A0A0A8WIM8	Clostridium_phage	99.6	1.4e-274
AWH83453.1|57032_57224_+	hypothetical protein	NA	A0A0A8WEW4	Clostridium_phage	98.4	9.5e-27
AWH83454.1|57230_58664_+	hypothetical protein	NA	A0A0A8WJD7	Clostridium_phage	97.5	1.7e-264
58639:58660	attR	TAAAAAAATATTCAGATAAAGA	NA	NA	NA	NA
AWH83455.1|58678_59176_+	hypothetical protein	NA	A0A0A8WEC6	Clostridium_phage	100.0	7.1e-90
AWH83456.1|59264_60275_+	hypothetical protein	NA	A0A0A8WHX4	Clostridium_phage	100.0	1.7e-191
AWH83457.1|60327_60960_+	hypothetical protein	NA	A0A0A8WIN0	Clostridium_phage	98.6	8.7e-109
AWH83458.1|60974_61604_+	hypothetical protein	NA	A0A0A8WEW6	Clostridium_phage	98.6	7.1e-111
AWH83459.1|61605_62595_+	hypothetical protein	NA	A0A0A8WJD9	Clostridium_phage	94.8	4.3e-179
AWH83460.1|62609_63104_+	hypothetical protein	NA	A0A2R2ZH01	Clostridioides_phage	100.0	3.3e-79
AWH83461.1|63103_63907_+	hypothetical protein	NA	A0A2R2ZGH2	Clostridioides_phage	93.6	3.3e-137
AWH83462.1|63946_64765_+	hypothetical protein	NA	A0A2R2ZGH3	Clostridioides_phage	82.7	2.3e-122
AWH83463.1|64863_65649_+	hypothetical protein	NA	A0A0A8WEX1	Clostridium_phage	96.6	3.6e-144
AWH83464.1|65664_65955_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83465.1|65984_66434_+	hypothetical protein	NA	A0A2R2ZGI8	Clostridioides_phage	91.3	1.0e-66
AWH83466.1|66434_66875_+	hypothetical protein	NA	A0A0A8WED2	Clostridium_phage	96.6	2.7e-77
AWH83467.1|66965_67340_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
AWH83468.1|67643_68537_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83469.1|69306_72534_+	restriction endonuclease subunit M	NA	A0A2R2ZGH5	Clostridioides_phage	99.7	0.0e+00
>prophage 2
CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	130529	85436	130274	130529	transposase,integrase,protease,tail	Clostridioides_phage(57.14%)	49	99149:99168	116374:116393
AWH83474.1|85436_87365_+|tail	tail fiber domain-containing protein	tail	A0A2R2ZGK4	Clostridioides_phage	100.0	0.0e+00
AWH83475.1|87533_89609_+|tail	phage tail protein	tail	A0A2R2ZGL7	Clostridioides_phage	99.6	9.2e-224
AWH83476.1|89625_94509_+	hypothetical protein	NA	A0A2R2ZGK2	Clostridioides_phage	99.9	0.0e+00
AWH83477.1|94522_94849_+	hypothetical protein	NA	A0A2R2ZGK3	Clostridioides_phage	100.0	8.0e-50
AWH83478.1|94927_95257_+	hypothetical protein	NA	A0A2R2ZGK9	Clostridioides_phage	99.1	9.0e-49
AWH83479.1|95274_96999_+	hypothetical protein	NA	A0A2R2ZGJ5	Clostridioides_phage	79.1	1.9e-219
AWH83480.1|97012_97306_+	hypothetical protein	NA	A0A2R2ZGK0	Clostridioides_phage	100.0	7.5e-47
AWH83481.1|97305_97488_+	hypothetical protein	NA	A0A2R2ZGL0	Clostridioides_phage	100.0	7.7e-26
AWH83482.1|97613_98429_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2R2ZGL3	Clostridioides_phage	100.0	6.1e-155
AWH83483.1|98440_99058_+	cell surface protein	NA	A0A2R2ZGL8	Clostridioides_phage	100.0	3.1e-119
AWH83484.1|99069_99321_+	hypothetical protein	NA	A0A2R2ZGL6	Clostridioides_phage	100.0	6.4e-39
99149:99168	attL	AATCTAATATTAAAAATAAA	NA	NA	NA	NA
AWH83485.1|99321_99633_+	hypothetical protein	NA	A0A2R2ZGM7	Clostridioides_phage	100.0	2.2e-49
AWH83486.1|99667_100603_+|integrase	site-specific integrase	integrase	A0A2R2ZGL2	Clostridioides_phage	100.0	4.8e-180
AWH83487.1|100873_101227_+	XRE family transcriptional regulator	NA	A0A2R2ZGL4	Clostridioides_phage	100.0	1.6e-56
AWH83524.1|101358_101685_+	transcriptional regulator	NA	A0A2R2ZGM0	Clostridioides_phage	100.0	1.9e-51
AWH83488.1|101839_103102_+	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	100.0	2.5e-232
AWH83525.1|103375_103591_+	hypothetical protein	NA	A0A2R2ZGK7	Clostridioides_phage	98.6	4.3e-28
AWH83489.1|103698_103830_-	hypothetical protein	NA	A0A2R2ZGL5	Clostridioides_phage	100.0	6.7e-16
AWH83490.1|104012_105857_-	hypothetical protein	NA	A0A2R2ZGM4	Clostridioides_phage	100.0	0.0e+00
AWH83491.1|105901_107014_-|integrase	site-specific integrase	integrase	A0A2R2ZGM9	Clostridioides_phage	100.0	3.9e-205
AWH83492.1|107464_108307_+	hypothetical protein	NA	A0A2R2ZGM6	Clostridioides_phage	100.0	2.5e-159
AWH83493.1|108309_109620_+|transposase	ISL3 family transposase	transposase	A0A2R2ZGN7	Clostridioides_phage	99.8	1.9e-235
AWH83494.1|109707_110367_-	hypothetical protein	NA	A0A0A8WHZ4	Clostridium_phage	99.5	8.5e-123
AWH83495.1|110375_110906_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA	A0A0A8WIQ1	Clostridium_phage	75.3	9.6e-69
AWH83496.1|110929_111424_-	crossover junction endodeoxyribonuclease RuvC	NA	A0A0A8WF06	Clostridium_phage	98.8	8.9e-85
AWH83497.1|111414_111987_-	guanylate kinase	NA	A0A2R2ZGN1	Clostridioides_phage	97.9	4.0e-105
AWH83498.1|111986_112370_-	hypothetical protein	NA	A0A0A8WEF9	Clostridium_phage	98.4	3.1e-69
AWH83499.1|112402_113233_-	SsmT	NA	A0A0A8WHZ5	Clostridium_phage	99.3	1.5e-161
AWH83500.1|113266_114418_-	site-specific DNA-methyltransferase	NA	A0A0A8WIQ4	Clostridium_phage	99.2	4.3e-223
AWH83501.1|114439_115240_-	hypothetical protein	NA	A0A2R2ZH44	Clostridioides_phage	95.5	8.6e-146
AWH83502.1|115313_115523_-	hypothetical protein	NA	A0A0A8WJG7	Clostridium_phage	98.6	3.1e-31
AWH83503.1|115533_115791_-	hypothetical protein	NA	A0A0A8WEG3	Clostridium_phage	97.6	4.6e-32
AWH83504.1|115774_116029_-	hypothetical protein	NA	A0A0A8WHZ8	Clostridium_phage	100.0	8.5e-39
AWH83505.1|116025_116553_-|protease	spore protease YyaC	protease	A0A0A8WIQ6	Clostridium_phage	94.9	1.8e-83
116374:116393	attR	TTTATTTTTAATATTAGATT	NA	NA	NA	NA
AWH83506.1|116580_117024_-	hypothetical protein	NA	A0A0A8WJG9	Clostridium_phage	98.6	1.2e-80
AWH83507.1|117047_117854_-	hypothetical protein	NA	A0A2R2ZGN0	Clostridioides_phage	93.2	7.1e-140
AWH83508.1|117874_118405_-	hypothetical protein	NA	A0A2R2ZGN3	Clostridioides_phage	98.9	2.9e-97
AWH83509.1|118509_119571_-	hypothetical protein	NA	A0A0A8WIQ8	Clostridium_phage	99.7	1.4e-204
AWH83510.1|119580_121107_-	hypothetical protein	NA	A0A0A8WF16	Clostridium_phage	100.0	9.3e-266
AWH83511.1|121147_121699_-	hypothetical protein	NA	A0A0A8WJH2	Clostridium_phage	100.0	5.3e-102
AWH83512.1|121759_122317_-	recombination protein	NA	A0A0A8WEG9	Clostridium_phage	100.0	2.0e-96
AWH83513.1|122356_123250_-	hypothetical protein	NA	A0A0A8WI02	Clostridium_phage	100.0	3.7e-137
AWH83514.1|123295_123964_-	hypothetical protein	NA	A0A2R2ZGQ4	Clostridioides_phage	86.5	4.6e-108
AWH83515.1|123975_124536_-	hypothetical protein	NA	A0A2R2ZGQ3	Clostridioides_phage	97.8	2.0e-101
AWH83516.1|124659_124968_-	hypothetical protein	NA	A0A0A8WF25	Clostridium_phage	99.0	1.3e-49
AWH83517.1|124967_125219_-	hypothetical protein	NA	A0A0A8WJH6	Clostridium_phage	95.1	2.0e-24
AWH83518.1|125322_128394_-	PHP domain-containing protein	NA	A0A0A8WEH6	Clostridium_phage	98.7	0.0e+00
AWH83519.1|128422_128668_-	hypothetical protein	NA	A0A0A8WI06	Clostridium_phage	98.8	2.3e-41
AWH83520.1|128708_130274_-	DNA cytosine methyltransferase	NA	A0A0E3DF50	Bacillus_phage	56.9	1.8e-09
>prophage 1
CP029156	Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence	48594	1914	17857	48594		Clostridium_phage(50.0%)	28	NA	NA
AWH83526.1|1914_2373_-	resolvase	NA	A0A1V0E032	Clostridioides_phage	77.6	3.9e-58
AWH83527.1|2587_3232_-	recombinase	NA	A0A1V0E036	Clostridioides_phage	98.1	1.6e-113
AWH83591.1|3235_3781_-	hypothetical protein	NA	A0A1V0E034	Clostridioides_phage	83.9	2.4e-75
AWH83528.1|3923_4367_-	RNA polymerase subunit sigma	NA	A0A1V0E028	Clostridioides_phage	72.4	9.3e-49
AWH83529.1|4476_4734_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83530.1|4753_5239_-	hypothetical protein	NA	Q24LD1	Clostridium_phage	57.3	3.3e-15
AWH83531.1|5262_5523_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83532.1|5547_6354_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83533.1|6365_6902_-	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	39.6	7.6e-29
AWH83534.1|6901_7228_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83535.1|7417_8002_-	sigma-70 family RNA polymerase sigma factor	NA	S5MNV1	Brevibacillus_phage	28.9	1.8e-07
AWH83536.1|7979_8357_-	single-stranded DNA-binding protein	NA	E2ELN0	Clostridium_phage	57.0	1.1e-37
AWH83537.1|8353_8536_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83538.1|8592_9297_-	hypothetical protein	NA	A0A0A7RUC6	Clostridium_phage	57.1	2.2e-68
AWH83539.1|9348_9735_-	hypothetical protein	NA	A0A0A7RUF3	Clostridium_phage	47.0	5.6e-18
AWH83540.1|10105_11434_-	DNA helicase	NA	A0A2H4J8K1	uncultured_Caudovirales_phage	26.8	9.3e-20
AWH83541.1|11455_11773_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83542.1|11910_12099_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83543.1|12091_12352_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83544.1|12514_12727_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83545.1|12745_12964_-	hypothetical protein	NA	A0A090D836	Clostridium_phage	46.9	1.7e-08
AWH83546.1|12990_13176_-	hypothetical protein	NA	NA	NA	NA	NA
AWH83547.1|13203_13923_-	helix-turn-helix domain-containing protein	NA	A0A1V0E018	Clostridioides_phage	57.8	7.0e-30
AWH83548.1|13951_14158_-	hypothetical protein	NA	E2ELM0	Clostridium_phage	49.3	2.7e-11
AWH83549.1|14491_14866_+	XRE family transcriptional regulator	NA	A0A1V0E015	Clostridioides_phage	76.6	2.1e-46
AWH83550.1|15499_15868_+	XRE family transcriptional regulator	NA	E2ELL8	Clostridium_phage	82.6	8.5e-48
AWH83551.1|16635_17019_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	45.7	5.6e-26
AWH83552.1|17167_17857_-	HTH domain-containing protein	NA	E2ELL5	Clostridium_phage	41.7	1.7e-41
>prophage 2
CP029156	Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence	48594	21157	47997	48594	portal,holin,head,plate,tail	Clostridioides_phage(56.25%)	36	NA	NA
AWH83556.1|21157_21310_+	hypothetical protein	NA	J9QED5	Clostridium_phage	53.2	1.6e-05
AWH83592.1|21690_22005_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83557.1|22039_22498_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83558.1|22746_22950_+	hypothetical protein	NA	NA	NA	NA	NA
AWH83559.1|22969_23875_+	ATPase	NA	Q0SPH6	Clostridium_phage	28.6	5.2e-22
AWH83560.1|23957_24473_+	hypothetical protein	NA	A0A0A8WEM4	Clostridium_phage	35.6	7.8e-23
AWH83561.1|24483_24819_-	CopY family transcriptional regulator	NA	A0A0A8WFI6	Clostridium_phage	45.0	3.7e-18
AWH83562.1|24956_26063_-	DNA (cytosine-5-)-methyltransferase	NA	A0A0A8WIK9	Clostridium_phage	62.7	6.2e-126
AWH83563.1|26134_26950_-	cell wall hydrolase	NA	Q24LG3	Clostridium_phage	96.3	1.3e-149
AWH83564.1|26949_27207_-|holin	holin	holin	A0A0K2SUI8	Clostridium_phage	96.5	5.4e-41
AWH83565.1|27210_27501_-	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	100.0	6.3e-46
AWH83566.1|27531_28098_-	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	81.1	8.5e-39
AWH83567.1|28130_28313_-	hypothetical protein	NA	A0A090D845	Clostridium_phage	96.7	1.4e-24
AWH83568.1|28312_28606_-	hypothetical protein	NA	A0A2R2ZGK0	Clostridioides_phage	75.3	6.6e-35
AWH83569.1|30263_31265_-|tail	phage tail protein	tail	A0A090DCR2	Clostridium_phage	86.5	9.8e-139
AWH83570.1|31265_31883_-	DUF2313 domain-containing protein	NA	J9QD29	Clostridium_phage	82.9	3.6e-91
AWH83571.1|31884_32937_-|plate	baseplate protein J	plate	A0A1V0DZY2	Clostridioides_phage	90.3	4.7e-176
AWH83572.1|32929_33364_-	DUF2634 domain-containing protein	NA	A0A1V0DZX2	Clostridioides_phage	90.1	6.5e-71
AWH83573.1|33356_33689_-	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	87.0	3.1e-49
AWH83593.1|33702_35220_-	cell wall hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	88.0	6.7e-264
AWH83574.1|35459_36095_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1V0DZX0	Clostridioides_phage	86.3	2.5e-108
AWH83575.1|36152_36629_-	DUF4352 domain-containing protein	NA	NA	NA	NA	NA
AWH83576.1|36675_40068_-|tail	phage tail tape measure protein	tail	A0A1V0DZX3	Clostridioides_phage	57.4	2.6e-175
AWH83577.1|40247_40664_-|portal	phage portal protein	portal	A0A1V0DZX5	Clostridioides_phage	81.2	3.5e-58
AWH83578.1|40679_41120_-|portal	phage portal protein	portal	A0A1V0DZX1	Clostridioides_phage	77.5	1.3e-63
AWH83579.1|41135_42191_-|tail	phage tail sheath protein	tail	A0A1V0DZX4	Clostridioides_phage	85.5	5.6e-169
AWH83580.1|42191_42641_-	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	89.3	4.0e-68
AWH83581.1|42649_43006_-	HK97 gp10 family phage protein	NA	A0A1V0DZV8	Clostridioides_phage	92.4	5.7e-57
AWH83582.1|43005_43353_-	hypothetical protein	NA	A0A1V0DZW2	Clostridioides_phage	89.6	1.4e-55
AWH83583.1|43364_43745_-	hypothetical protein	NA	A0A1V0DZU9	Clostridioides_phage	93.7	1.9e-58
AWH83584.1|43728_44001_-	hypothetical protein	NA	A0A1V0DZV5	Clostridioides_phage	75.3	4.2e-28
AWH83585.1|44014_44938_-	hypothetical protein	NA	A0A1V0DZW0	Clostridioides_phage	85.3	9.6e-149
AWH83586.1|44966_45569_-	DUF4355 domain-containing protein	NA	A0A1V0DZW6	Clostridioides_phage	72.9	5.6e-73
AWH83587.1|45594_45921_-	hypothetical protein	NA	A0A1J1J9Q7	Escherichia_phage	30.6	1.2e-05
AWH83588.1|45980_46742_-|head	phage head morphogenesis protein	head	A0A1V0DZW9	Clostridioides_phage	87.0	7.8e-112
AWH83589.1|46719_47997_-|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	87.3	1.7e-215
