assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003073835.1_ASM307383v1	CP029115	Escherichia coli strain AR435 chromosome, complete genome	1	660168-660317	1	CRISPRCasFinder	no	RT	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA|474aa|up_7|CP029115.1_651338_652760_+,NA|90aa|up_6|CP029115.1_652812_653082_+,NA|43aa|down_1|CP029115.1_662089_662218_-,NA|186aa|down_7|CP029115.1_668941_669499_+,NA|62aa|down_9|CP029115.1_670203_670389_-	NA|198aa|up_9|CP029115.1_650025_650619_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_8|CP029115.1_650763_651216_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|474aa|up_7|CP029115.1_651338_652760_+	NA	NA|90aa|up_6|CP029115.1_652812_653082_+	NA	NA|335aa|up_5|CP029115.1_653138_654143_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP029115.1_654304_654721_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP029115.1_654766_655270_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|CP029115.1_655462_656650_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP029115.1_656701_659557_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP029115.1_659556_660000_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP029115.1_660353_661865_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|43aa|down_1|CP029115.1_662089_662218_-	NA	NA|336aa|down_2|CP029115.1_662224_663232_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_3|CP029115.1_663231_664314_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_4|CP029115.1_664474_665977_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_5|CP029115.1_666104_667124_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|402aa|down_6|CP029115.1_667625_668831_+	PRK09692, PRK09692, integrase; Provisional	NA|186aa|down_7|CP029115.1_668941_669499_+	NA	NA|77aa|down_8|CP029115.1_669876_670107_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|62aa|down_9|CP029115.1_670203_670389_-	NA
GCA_003073835.1_ASM307383v1	CP029115	Escherichia coli strain AR435 chromosome, complete genome	3	1439634-1439730	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA	NA|454aa|up_9|CP029115.1_1427414_1428776_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|CP029115.1_1428832_1430134_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|CP029115.1_1430155_1431301_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|CP029115.1_1431528_1432314_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|CP029115.1_1432324_1433560_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|CP029115.1_1433581_1434631_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|CP029115.1_1434947_1436615_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|CP029115.1_1436624_1437884_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|CP029115.1_1437894_1438710_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|CP029115.1_1438706_1439600_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|CP029115.1_1439794_1440862_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|CP029115.1_1440858_1441368_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|CP029115.1_1441485_1442208_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|CP029115.1_1442210_1442705_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|CP029115.1_1442878_1444264_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|CP029115.1_1444299_1444821_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|CP029115.1_1444928_1445141_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|CP029115.1_1445142_1446009_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|CP029115.1_1446479_1447022_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|CP029115.1_1447241_1447934_+	PRK15195, PRK15195, molecular chaperone FimC
GCA_003073835.1_ASM307383v1	CP029115	Escherichia coli strain AR435 chromosome, complete genome	4	3227672-3227798	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA|42aa|down_9|CP029115.1_3237206_3237332_+	NA|395aa|up_9|CP029115.1_3206579_3207764_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|CP029115.1_3207837_3208614_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|CP029115.1_3208618_3210268_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|CP029115.1_3210268_3214783_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|CP029115.1_3214806_3215430_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|CP029115.1_3215426_3217115_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|CP029115.1_3217263_3219891_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|CP029115.1_3220037_3220760_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|CP029115.1_3220887_3224640_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|CP029115.1_3225335_3227621_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|CP029115.1_3227854_3228985_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|CP029115.1_3228984_3229239_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|CP029115.1_3229292_3229943_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|69aa|down_3|CP029115.1_3230157_3230364_+	PRK09729, PRK09729, hypothetical protein; Provisional	NA|317aa|down_4|CP029115.1_3230405_3231356_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_5|CP029115.1_3231486_3232845_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_6|CP029115.1_3233117_3234746_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_7|CP029115.1_3234735_3235995_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_8|CP029115.1_3235991_3237182_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|42aa|down_9|CP029115.1_3237206_3237332_+	NA
GCA_003073835.1_ASM307383v1	CP029115	Escherichia coli strain AR435 chromosome, complete genome	5	3723540-3724241	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA|40aa|down_7|CP029115.1_3729912_3730032_-	NA|254aa|up_9|CP029115.1_3715351_3716113_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP029115.1_3716093_3717143_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP029115.1_3717139_3717619_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP029115.1_3717618_3718329_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP029115.1_3718347_3718659_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP029115.1_3718852_3719176_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP029115.1_3719225_3719831_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP029115.1_3719830_3721258_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP029115.1_3721259_3722168_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP029115.1_3722419_3723457_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|54aa|down_0|CP029115.1_3724346_3724508_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|CP029115.1_3724632_3725550_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|CP029115.1_3725565_3726165_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|165aa|down_3|CP029115.1_3726151_3726646_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|CP029115.1_3726828_3727920_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|CP029115.1_3727932_3728415_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|461aa|down_6|CP029115.1_3728407_3729790_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	NA|40aa|down_7|CP029115.1_3729912_3730032_-	NA	cas3|889aa|down_8|CP029115.1_3730330_3732997_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_9|CP029115.1_3733355_3734090_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_003073835.1_ASM307383v1	CP029115	Escherichia coli strain AR435 chromosome, complete genome	6	3749790-3750124	6,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	Unclear	TCGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	30,28,28	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Unclear	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	NA,NA|47aa|down_1|CP029115.1_3751273_3751414_+	NA|424aa|up_9|CP029115.1_3738434_3739706_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|CP029115.1_3739696_3739957_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|CP029115.1_3739973_3740549_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|CP029115.1_3740696_3741557_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|CP029115.1_3741553_3742333_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|CP029115.1_3742310_3743648_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|CP029115.1_3743741_3745196_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP029115.1_3745265_3746051_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP029115.1_3746369_3747647_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP029115.1_3747673_3749152_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP029115.1_3750463_3751135_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|CP029115.1_3751273_3751414_+	NA	NA|291aa|down_2|CP029115.1_3751427_3752300_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|CP029115.1_3752359_3753658_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|CP029115.1_3753745_3755383_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|CP029115.1_3755610_3756402_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|CP029115.1_3756472_3756808_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|CP029115.1_3756807_3757056_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|CP029115.1_3757133_3759368_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|CP029115.1_3759415_3760717_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
