The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	1439578	1447397	2793317		Hokovirus(16.67%)	10	NA	NA
AWE62096.1|1439578_1440634_-	histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AWE61285.1|1440633_1441320_-	response regulator	NA	NA	NA	NA	NA
AWE61723.1|1441294_1441768_-	doxX family protein	NA	NA	NA	NA	NA
AWE62239.1|1442108_1442549_-	electron transfer DM13 family protein	NA	NA	NA	NA	NA
AWE61873.1|1442828_1443233_-	putative membrane protein	NA	NA	NA	NA	NA
AWE61540.1|1443511_1444225_-	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWE60725.1|1444228_1444648_-	queuosine biosynthesis protein QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWE61786.1|1444649_1445318_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
AWE60748.1|1445668_1446262_+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
AWE60694.1|1446245_1447397_+	chorismate binding enzyme family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	1459373	1473649	2793317		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AWE60968.1|1459373_1460432_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
AWE60468.1|1460589_1461138_+	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AWE62658.1|1461825_1462743_-	putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
AWE62977.1|1463012_1464518_-	H+ symporter family protein	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
AWE61549.1|1464858_1465359_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AWE61576.1|1465378_1466245_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA	NA
AWE61456.1|1467046_1467445_+	nrdI protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AWE60883.1|1467407_1469513_+	ribonucleoside-diphosphate reductase, alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWE62822.1|1469630_1470602_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
AWE61112.1|1471003_1471948_+	fecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.6	2.7e-138
AWE60544.1|1471934_1472891_+	fecCD transport family protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AWE61356.1|1472887_1473649_+	ABC transporter family protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	1526094	1545369	2793317	coat,integrase,terminase	Staphylococcus_phage(68.18%)	28	1528756:1528771	1543557:1543572
AWE61258.1|1526094_1528467_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	7.3e-92
AWE62825.1|1528488_1528953_+	ssrA-binding protein	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
1528756:1528771	attL	CGTGAAATCATTAAAT	NA	NA	NA	NA
AWE60524.1|1529515_1529917_-|integrase	phage integrase family protein	integrase	A0A0A8WF08	Clostridium_phage	35.3	8.7e-14
AWE61657.1|1530611_1531415_-	helix-turn-helix family protein	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
AWE60545.1|1531577_1531754_+	hypothetical protein	NA	NA	NA	NA	NA
AWE61119.1|1531789_1532008_+	helix-turn-helix domain protein	NA	NA	NA	NA	NA
AWE62293.1|1532019_1532166_+	putative membrane protein	NA	NA	NA	NA	NA
AWE61330.1|1532158_1532368_+	putative pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
AWE62221.1|1532370_1532688_+	hypothetical protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
AWE62539.1|1532751_1533621_+	primase C terminal 1 family protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.8	8.7e-160
AWE62037.1|1533637_1535095_+	virulence-associated E family protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	6.6e-277
AWE62976.1|1535395_1535758_+	putative interference protein with phage growth	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
AWE60420.1|1535759_1536044_+	putative pathogenicity island protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
AWE62619.1|1536040_1536682_+	putative saPI1 ORF9-like protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.9e-111
AWE61273.1|1536928_1537063_+	hypothetical protein	NA	NA	NA	NA	NA
AWE60795.1|1537390_1537735_+	putative saPI1 ORF8-like protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
AWE62166.1|1537769_1538348_+	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	95.8	7.8e-80
AWE61907.1|1538347_1538524_+	hypothetical protein	NA	A0A1W6JQJ5	Staphylococcus_phage	100.0	7.7e-23
AWE62705.1|1538576_1539104_+|coat	putative spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
AWE62503.1|1539106_1539448_+	putative pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	99.1	3.8e-58
AWE61401.1|1539444_1539813_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	71.3	1.1e-42
AWE62408.1|1539820_1540015_+|terminase	putative terminase small subunit	terminase	A0A2H4JHP6	uncultured_Caudovirales_phage	62.2	3.1e-09
AWE62225.1|1540118_1541159_+	hypothetical protein	NA	NA	NA	NA	NA
AWE62695.1|1541271_1541460_+	hypothetical protein	NA	NA	NA	NA	NA
AWE62436.1|1541452_1542121_+	restriction endonuclease family protein	NA	A0A0A7S0U2	Clostridium_phage	33.7	4.5e-15
AWE62910.1|1542341_1542896_-	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
AWE61311.1|1543679_1544480_+	enterotoxin type C-2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
1543557:1543572	attR	CGTGAAATCATTAAAT	NA	NA	NA	NA
AWE60783.1|1544646_1545369_-	enterotoxin type E	NA	A0A097PAT7	Streptococcus_pyogenes_phage	29.3	1.6e-18
>prophage 4
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	1580129	1623057	2793317	portal,tail,terminase,capsid,head,integrase,holin	Staphylococcus_phage(64.52%)	62	1572128:1572143	1629945:1629960
1572128:1572143	attL	AAAGAATTACCAAAAG	NA	NA	NA	NA
AWE62767.1|1580129_1581179_-|integrase	phage integrase family protein	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
AWE61529.1|1581428_1582334_-	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
AWE62231.1|1582551_1583277_-	short C-terminal domain protein	NA	A0A0F6N4L7	Staphylococcus_phage	98.8	8.4e-124
AWE61477.1|1583324_1583999_-	helix-turn-helix domain protein	NA	A0A1W6JPS3	Staphylococcus_phage	92.0	2.3e-115
AWE62678.1|1584189_1584429_+	helix-turn-helix family protein	NA	A0A2H4J3I3	uncultured_Caudovirales_phage	88.5	1.2e-31
AWE61532.1|1584444_1584648_+	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
AWE62669.1|1584644_1584779_-	hypothetical protein	NA	A0A0E3T9H2	Staphylococcus_phage	100.0	5.5e-13
AWE61473.1|1584836_1585628_+	BRO family, N-terminal domain protein	NA	Q8SDX0	Staphylococcus_phage	99.6	2.5e-145
AWE62219.1|1585628_1585853_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
AWE62857.1|1585981_1586647_-	hypothetical protein	NA	Q9G033	Staphylococcus_virus	99.5	1.1e-117
AWE62898.1|1586718_1586940_+	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	98.6	1.9e-31
AWE61118.1|1587182_1587500_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
AWE62314.1|1587576_1587765_+	hypothetical protein	NA	Q4ZAD8	Staphylococcus_virus	93.5	1.1e-27
AWE61933.1|1587777_1588314_+	bacteriophage Mu Gam like family protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
AWE61138.1|1588314_1589094_+	bacterial dnaA family protein	NA	Q8SDW5	Staphylococcus_phage	100.0	2.5e-142
AWE62530.1|1589123_1589678_+	putative single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
AWE60588.1|1589690_1590356_+	hypothetical protein	NA	Q9G025	Staphylococcus_virus	99.5	1.4e-125
AWE61999.1|1590355_1591120_+	AP2 domain protein	NA	A0A2I6PDA5	Staphylococcus_phage	99.2	3.5e-144
AWE62612.1|1591112_1591856_+	conserved phage family protein	NA	A0A2I6PDA9	Staphylococcus_phage	99.6	2.5e-115
AWE60499.1|1591867_1592647_+	AAA domain family protein	NA	Q9G022	Staphylococcus_virus	99.6	7.1e-145
AWE61961.1|1592640_1592802_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
AWE62394.1|1592814_1593024_+	hypothetical protein	NA	A0A0N9BAW8	Staphylococcus_phage	93.2	5.3e-31
AWE62540.1|1593033_1593438_+	hypothetical protein	NA	Q4ZBD8	Staphylococcus_virus	97.8	1.5e-66
AWE61615.1|1593442_1593628_+	hypothetical protein	NA	A0A2I6PDN7	Staphylococcus_phage	96.7	1.0e-25
AWE61386.1|1593628_1593988_+	PVL ORF-50-like family protein	NA	B7T0B4	Staphylococcus_virus	67.2	5.6e-36
AWE62198.1|1593991_1594234_+	phage family protein	NA	M1T302	Staphylococcus_phage	98.8	8.6e-41
AWE60759.1|1594247_1594496_+	hypothetical protein	NA	C8CH04	Staphylococcus_phage	97.6	5.9e-37
AWE61602.1|1594488_1595025_+	dUTPase family protein	NA	Q9MBR0	Staphylococcus_prophage	99.4	4.6e-95
AWE62765.1|1595061_1595250_+	hypothetical protein	NA	A0A2I6PEH2	Staphylococcus_phage	96.7	4.3e-24
AWE61880.1|1595224_1595425_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
AWE61981.1|1595427_1595601_+	transcriptional activator RinB family protein	NA	Q4ZBK0	Staphylococcus_phage	96.5	1.4e-21
AWE60807.1|1595601_1595748_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	97.9	2.9e-15
AWE61522.1|1595762_1596182_+	phage transcriptional regulator, RinA family protein	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
AWE61679.1|1596368_1596809_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
AWE62810.1|1596795_1598073_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
AWE60887.1|1598083_1599619_+|portal	phage portal protein, SPP1 family	portal	Q4ZDV9	Staphylococcus_virus	99.8	2.9e-291
AWE60973.1|1599625_1600621_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	E0Y3K7	Staphylococcus_virus	99.7	1.3e-183
AWE62979.1|1600693_1600864_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	98.2	1.3e-22
AWE60561.1|1600998_1601610_+	hypothetical protein	NA	A0EWS9	Staphylococcus_virus	99.5	9.2e-39
AWE62161.1|1601623_1602598_+|capsid	phage major capsid protein, HK97 family	capsid	A0EWT0	Staphylococcus_virus	100.0	1.3e-183
AWE61371.1|1602619_1602907_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
AWE62597.1|1602915_1603248_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
AWE62753.1|1603546_1603894_+	hypothetical protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
AWE62599.1|1603905_1604289_+	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	98.4	1.0e-67
AWE62022.1|1604307_1604889_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
AWE61226.1|1604950_1605316_+	phage family protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
AWE62307.1|1605345_1605690_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AWE61024.1|1605706_1609171_+	putative membrane protein	NA	Q4ZDL9	Staphylococcus_virus	99.9	8.6e-267
AWE61901.1|1609183_1610131_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
AWE60401.1|1610139_1612041_+|tail	prophage endopeptidase tail family protein	tail	Q4ZDD8	Staphylococcus_virus	100.0	0.0e+00
AWE62871.1|1612055_1613966_+	putative minor structural protein	NA	A1KX41	Staphylococcus_virus	99.2	0.0e+00
AWE62653.1|1613965_1615789_+	hypothetical protein	NA	B1H3M3	Staphylococcus_phage	100.0	0.0e+00
AWE61985.1|1615788_1616166_+	hypothetical protein	NA	W5R9M2	Staphylococcus_phage	98.4	5.8e-60
AWE60936.1|1616166_1616349_+	hypothetical protein	NA	A0A2H4PQV2	Staphylococcus_phage	100.0	1.9e-29
AWE60684.1|1616389_1616689_+	hypothetical protein	NA	A0EWU6	Staphylococcus_virus	91.9	1.9e-42
AWE60638.1|1616825_1618724_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	E0Y3M7	Staphylococcus_virus	99.5	0.0e+00
AWE62354.1|1618736_1619975_+	collagen triple helix repeat family protein	NA	E0Y3M8	Staphylococcus_virus	99.3	3.8e-209
AWE62299.1|1619979_1620375_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
AWE60856.1|1620430_1620868_+|holin	holin, phage phi LC3 family	holin	B2ZZ05	Staphylococcus_phage	97.9	2.6e-72
AWE62848.1|1620848_1622294_+	CHAP domain protein	NA	Q4ZB16	Staphylococcus_virus	99.0	1.7e-293
AWE61008.1|1622560_1622689_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	1.1e-15
AWE61438.1|1622871_1623057_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
1629945:1629960	attR	AAAGAATTACCAAAAG	NA	NA	NA	NA
>prophage 5
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	1775735	1784208	2793317		Synechococcus_phage(33.33%)	9	NA	NA
AWE62000.1|1775735_1776218_+	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
AWE62840.1|1776204_1777329_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWE61141.1|1777332_1778037_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
AWE60699.1|1778036_1778300_+	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA	NA
AWE61291.1|1778349_1778973_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AWE60528.1|1778965_1781155_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AWE61248.1|1781133_1782618_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AWE61973.1|1782610_1783639_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
AWE60816.1|1783641_1784208_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 6
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	2039442	2054894	2793317	head,portal,integrase,terminase	Staphylococcus_phage(52.63%)	23	2033265:2033282	2057730:2057747
2033265:2033282	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
AWE62664.1|2039442_2040150_-|integrase	phage integrase, N-terminal SAM-like domain protein	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
AWE62046.1|2040202_2040898_-	host cell surface-exposed lipofamily protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	51.5	2.1e-07
AWE62432.1|2040909_2041293_-	hypothetical protein	NA	NA	NA	NA	NA
AWE60822.1|2041439_2041805_-	helix-turn-helix domain protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
AWE61332.1|2042226_2042508_+	hypothetical protein	NA	NA	NA	NA	NA
AWE61963.1|2042678_2042840_+	hypothetical protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AWE62332.1|2042926_2043244_+	hypothetical protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AWE62165.1|2043504_2044041_+	glycosyl hydrolases 17 family protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
AWE62929.1|2044041_2044821_+	bacterial dnaA family protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
AWE61221.1|2044847_2045396_+	putative single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.7e-92
AWE62942.1|2045409_2046324_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	51.3	1.1e-48
AWE61331.1|2046324_2046615_+	phage family protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
AWE61613.1|2046629_2046788_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
AWE61826.1|2046793_2047105_+	hypothetical protein	NA	NA	NA	NA	NA
AWE62164.1|2047097_2047628_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
AWE62151.1|2047873_2048338_+	putative small GTP-binding domain protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
AWE61013.1|2048422_2048572_+	putative membrane protein	NA	NA	NA	NA	NA
AWE62715.1|2048614_2049103_+	sigma-70, region 4 family protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
AWE60957.1|2049254_2049683_+	homeo-like domain protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AWE61245.1|2049669_2050944_+|terminase	phage terminase, large subunit, PBSX family	terminase	Q4ZE37	Staphylococcus_virus	76.4	4.2e-195
AWE60992.1|2050956_2052384_+|portal	phage portal protein, SPP1 family	portal	Q4ZE36	Staphylococcus_virus	71.9	3.6e-195
AWE61262.1|2052393_2053926_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	Q4ZE35	Staphylococcus_virus	61.9	3.9e-110
AWE60951.1|2054240_2054894_+|head	phage head morphogenesis protein, SPP1 gp7 family	head	A0A1J0MFV1	Staphylococcus_phage	46.5	4.2e-13
2057730:2057747	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 7
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	2328163	2336475	2793317		Staphylococcus_phage(16.67%)	7	NA	NA
AWE62645.1|2328163_2328931_-	AAA domain protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	7.8e-19
AWE62731.1|2329074_2329965_-	putative endonuclease 4	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AWE61997.1|2329974_2331321_-	DEAD/DEAH box helicase family protein	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
AWE62082.1|2331434_2332535_-	NIF3 family protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
AWE61701.1|2332537_2333215_-	hypothetical protein	NA	NA	NA	NA	NA
AWE62045.1|2333345_2334452_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AWE61733.1|2334675_2336475_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 8
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	2538218	2588394	2793317	tRNA,transposase,protease	Staphylococcus_phage(86.49%)	47	NA	NA
AWE61527.1|2538218_2544767_-	sasC/Mrp/FmtB intercellular aggregation domain protein	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
AWE60496.1|2545091_2545403_-	rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
AWE61566.1|2545424_2547839_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
AWE60582.1|2548130_2549312_-	sugar (and other) transporter family protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
AWE62940.1|2549421_2550375_+	radical SAM superfamily protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AWE61239.1|2550371_2550935_+	methyltransferase domain protein	NA	A0A2H4PQV0	Staphylococcus_phage	97.9	1.2e-101
AWE61260.1|2551051_2551453_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AWE61350.1|2552023_2552851_-	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AWE60685.1|2553084_2554086_+	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AWE61567.1|2554207_2554672_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AWE60421.1|2554684_2555866_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
AWE60809.1|2555876_2556509_-	riboflavin synthase, alpha subunit	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
AWE60700.1|2556515_2557559_-	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
AWE62473.1|2558040_2559543_-	L-lysine 6-monooxygenase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AWE62383.1|2560499_2561792_+	arsenite/antimonite efflux pump membrane family protein	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
AWE62984.1|2561878_2562733_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWE62856.1|2563007_2563232_-	hypothetical protein	NA	NA	NA	NA	NA
AWE60577.1|2563430_2563901_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	84.5	6.5e-69
AWE62425.1|2564337_2564457_+	hypothetical protein	NA	NA	NA	NA	NA
AWE61846.1|2564443_2564887_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
AWE62250.1|2565183_2565819_+|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWE62185.1|2565985_2566606_+|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWE61382.1|2567400_2568114_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AWE62137.1|2568525_2568675_+	putative membrane protein	NA	NA	NA	NA	NA
AWE61745.1|2568930_2569296_+	crcB-like family protein	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
AWE62155.1|2569292_2569646_+	crcB-like family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
AWE62774.1|2569895_2570729_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
AWE61172.1|2570940_2571849_-	nuclease-related domain protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
AWE62798.1|2571973_2573167_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AWE61597.1|2573538_2575131_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AWE61159.1|2575510_2576281_-	alpha/beta hydrolase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.8e-140
AWE62235.1|2576261_2576741_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AWE61605.1|2576800_2577058_+	putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
AWE61443.1|2577054_2578056_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
AWE62613.1|2578060_2579539_-	O-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
AWE61573.1|2579697_2580180_-	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.9e-79
AWE61020.1|2580491_2581106_+	excalibur calcium-binding domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.1	4.6e-22
AWE62102.1|2581186_2582182_+	hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
AWE60884.1|2582257_2582884_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
AWE61926.1|2582924_2583266_+	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
AWE61274.1|2583294_2583471_+	hypothetical protein	NA	NA	NA	NA	NA
AWE61989.1|2583467_2584274_-	DDE domain protein	NA	A0A2I7SC85	Paenibacillus_phage	54.5	1.1e-76
AWE62120.1|2584315_2584552_-|transposase	transposase family protein	transposase	A0A0C5AJ30	Paenibacillus_phage	66.7	2.4e-19
AWE62481.1|2584988_2585165_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	91.4	4.1e-24
AWE62742.1|2585474_2586128_-	hypothetical protein	NA	NA	NA	NA	NA
AWE62880.1|2586137_2587844_-	description family protein	NA	NA	NA	NA	NA
AWE62936.1|2588157_2588394_+|transposase	transposase family protein	transposase	A0A0C5AJ30	Paenibacillus_phage	66.7	2.4e-19
>prophage 9
CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2793317	2718374	2764163	2793317	portal,tail,protease,capsid,head,integrase,holin	Staphylococcus_phage(98.51%)	67	2737798:2737815	2762144:2762161
AWE62382.1|2718374_2718572_+	phospholipase C domain protein	NA	A0A1P8L6A7	Staphylococcus_phage	93.8	8.3e-26
AWE62446.1|2718943_2719123_+	putative membrane protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AWE60648.1|2719202_2719358_-	hypothetical protein	NA	A0A1P8L6A1	Staphylococcus_phage	100.0	1.4e-20
AWE60404.1|2719502_2719694_+	putative membrane protein	NA	M9NS66	Staphylococcus_phage	100.0	1.7e-23
AWE62730.1|2719746_2720097_-	complement inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AWE62245.1|2720780_2721230_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AWE60633.1|2721324_2721621_-	bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AWE61502.1|2722309_2722801_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AWE62980.1|2722991_2723747_-	CHAP domain protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AWE62145.1|2723758_2723992_-|holin	holin, phage phi LC3 family	holin	D2JLG4	Staphylococcus_phage	100.0	1.2e-36
AWE61338.1|2724224_2724359_-	putative membrane protein	NA	D2JLG3	Staphylococcus_phage	100.0	9.3e-13
AWE60766.1|2724550_2724847_-	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AWE62190.1|2724904_2725192_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AWE61577.1|2725238_2725391_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AWE62994.1|2725380_2729166_-	phage minor structural, N-terminal region domain protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
AWE62726.1|2729181_2730666_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
AWE61763.1|2730662_2735192_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
AWE60665.1|2735248_2735386_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AWE60751.1|2735436_2735787_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AWE60747.1|2735836_2735977_-	bacterial Ig-like domain family protein	NA	A0A2I6PDK6	Staphylococcus_phage	100.0	2.5e-16
AWE62821.1|2736102_2736747_-|tail	phage major tail, phi13 family protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
AWE61592.1|2736747_2737155_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AWE60769.1|2737151_2737556_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
AWE60391.1|2737552_2737915_-|head,tail	phage head-tail joining family protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2737798:2737815	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AWE61147.1|2737898_2738183_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AWE60764.1|2738172_2738457_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AWE61614.1|2738476_2739622_-|capsid	phage major capsid protein, HK97 family	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AWE61951.1|2739645_2740383_-|protease	clp protease family protein	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AWE60903.1|2740366_2741554_-|portal	phage portal protein, HK97 family	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AWE61652.1|2741569_2743231_-	phage Terminase family protein	NA	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
AWE62016.1|2743227_2743572_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AWE62101.1|2743702_2744002_-	HNH endonuclease family protein	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AWE61470.1|2744233_2744650_-	phage transcriptional regulator, RinA family protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AWE60488.1|2744677_2744878_-	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
AWE62754.1|2744877_2745027_-	transcriptional activator RinB family protein	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AWE61793.1|2745023_2745410_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AWE62297.1|2745406_2745613_-	hypothetical protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AWE61558.1|2745609_2745846_-	putative membrane protein	NA	A0A2H4PQJ7	Staphylococcus_phage	100.0	5.8e-34
AWE60515.1|2745891_2746428_-	dUTPase family protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
AWE61687.1|2746420_2746591_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
AWE62968.1|2746577_2746832_-	hypothetical protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
AWE61688.1|2746846_2747089_-	phage family protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
AWE62850.1|2747092_2747461_-	PVL ORF-50-like family protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AWE61705.1|2747473_2747878_-	endodeoxyribonuclease RusA family protein	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
AWE61122.1|2747886_2748105_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AWE61599.1|2748111_2749005_-	dnaD domain protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
AWE60771.1|2749034_2749505_-	single-stranded DNA-binding family protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
AWE62877.1|2749505_2749991_-	beta-lactamase superfamily domain protein	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.4e-87
AWE62623.1|2750203_2751124_-	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AWE62737.1|2751125_2753069_-	AAA domain protein	NA	S4V9K6	Staphylococcus_phage	99.8	0.0e+00
AWE60671.1|2753349_2753610_-	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AWE62172.1|2753614_2753917_-	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AWE60393.1|2754169_2754493_-	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AWE62981.1|2754547_2754928_+	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
AWE61794.1|2754914_2755112_-	putative phi PVL orf 35-like protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
AWE62515.1|2755127_2755880_-	phage antirepressor KilAC domain protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
AWE62865.1|2755930_2756260_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
AWE61996.1|2756460_2756742_-	helix-turn-helix domain protein	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
AWE61106.1|2756874_2757588_+	helix-turn-helix family protein	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AWE61211.1|2757603_2758536_+	exonuclease family protein	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AWE60537.1|2758541_2758883_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
AWE61732.1|2759086_2759269_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
AWE61135.1|2759368_2759833_+	putative lipoprotein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
AWE61206.1|2759891_2760929_+|integrase	integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	2.6e-179
AWE61328.1|2760985_2761810_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AWE60900.1|2762066_2763086_-	leucotoxin LukDv	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
2762144:2762161	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AWE61874.1|2763107_2764163_-	hypothetical protein	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
