The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1208570	1216389	2786146		Hokovirus(16.67%)	10	NA	NA
AWE56554.1|1208570_1209626_-	histidine protein kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
AWE56820.1|1209625_1210312_-	response regulator	NA	NA	NA	NA	NA
AWE57454.1|1210286_1210760_-	doxX family protein	NA	NA	NA	NA	NA
AWE56324.1|1211100_1211541_-	electron transfer DM13 family protein	NA	NA	NA	NA	NA
AWE57287.1|1211820_1212405_-	putative membrane protein	NA	NA	NA	NA	NA
AWE57025.1|1212503_1213217_-	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AWE56725.1|1213220_1213640_-	queuosine biosynthesis protein QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AWE55383.1|1213641_1214310_-	queuosine biosynthesis protein QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
AWE55510.1|1214660_1215254_+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
AWE55950.1|1215237_1216389_+	chorismate binding enzyme family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1228365	1242641	2786146		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
AWE57060.1|1228365_1229424_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
AWE56881.1|1229581_1230130_+	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AWE57350.1|1230817_1231735_-	putative lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
AWE55951.1|1232004_1233510_-	H+ symporter family protein	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
AWE56094.1|1233850_1234351_-	7-cyano-7-deazaguanine reductase	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AWE56758.1|1234370_1235237_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA	NA
AWE57208.1|1236038_1236437_+	nrdI protein	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AWE55288.1|1236399_1238505_+	ribonucleoside-diphosphate reductase, alpha subunit	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AWE55370.1|1238622_1239594_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
AWE57012.1|1239968_1240940_+	fecCD transport family protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
AWE57103.1|1240926_1241883_+	fecCD transport family protein	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AWE56677.1|1241879_1242641_+	ABC transporter family protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1484903	1493376	2786146		Synechococcus_phage(33.33%)	9	NA	NA
AWE55590.1|1484903_1485386_+	phosphoribosylaminoimidazole carboxylase, catalytic subunit	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
AWE55372.1|1485372_1486497_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AWE56822.1|1486500_1487205_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
AWE56113.1|1487204_1487468_+	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA	NA
AWE56527.1|1487469_1488141_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
AWE55317.1|1488133_1490323_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
AWE57253.1|1490301_1491786_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	6.5e-46
AWE57079.1|1491778_1492807_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
AWE55975.1|1492809_1493376_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 4
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1544963	1589525	2786146	capsid,holin,terminase,portal,tail,head	Staphylococcus_phage(75.0%)	64	NA	NA
AWE55745.1|1544963_1545446_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
AWE55127.1|1545507_1546647_-	HIGH Nucleotidyl Transferase family protein	NA	NA	NA	NA	NA
AWE57107.1|1546773_1547331_+	hypothetical protein	NA	NA	NA	NA	NA
AWE55475.1|1547410_1547584_+	ribosomal protein L32	NA	NA	NA	NA	NA
AWE57441.1|1547700_1549086_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
AWE56954.1|1549292_1549973_-	pemK-like family protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
AWE55857.1|1550008_1550728_-	helix-turn-helix domain protein	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
AWE57217.1|1550869_1551088_+	helix-turn-helix family protein	NA	A0A2H4PQQ0	Staphylococcus_phage	100.0	1.7e-35
AWE56502.1|1551103_1551892_+	BRO family, N-terminal domain protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
AWE55830.1|1551908_1552103_+	hypothetical protein	NA	E9LT75	Staphylococcus_phage	98.4	7.9e-29
AWE56986.1|1552155_1552332_+	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	100.0	9.7e-26
AWE57510.1|1552306_1552537_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
AWE56735.1|1552586_1552724_+	hypothetical protein	NA	S4SX85	Staphylococcus_phage	100.0	3.2e-16
AWE56418.1|1552972_1553233_+	hypothetical protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
AWE55780.1|1553245_1553782_+	bacteriophage Mu Gam like family protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
AWE55501.1|1553782_1554433_+	ERF superfamily protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
AWE55388.1|1554429_1554873_+	single-stranded DNA-binding family protein	NA	A0A2I6PD99	Staphylococcus_phage	100.0	1.8e-76
AWE55398.1|1554884_1555559_+	hypothetical protein	NA	A1KX69	Staphylococcus_virus	100.0	3.9e-131
AWE55456.1|1555697_1555979_-	pTS system, fructose subfamily, IIA component domain protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
AWE56303.1|1556044_1556815_+	conserved phage family protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
AWE56958.1|1556824_1557604_+	istB-like ATP binding family protein	NA	A0A1X9H042	Staphylococcus_phage	98.8	1.6e-144
AWE55664.1|1557768_1557990_+	hypothetical protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
AWE57433.1|1557999_1558404_+	endodeoxyribonuclease RusA family protein	NA	A0A075M042	Staphylococcus_phage	97.0	1.0e-70
AWE56625.1|1558416_1558785_+	PVL ORF-50-like family protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AWE56984.1|1558788_1559031_+	phage family protein	NA	Q4ZBT7	Staphylococcus_virus	92.5	4.4e-37
AWE55033.1|1559045_1559447_+	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	80.6	5.6e-53
AWE56993.1|1559446_1559722_+	hypothetical protein	NA	Q4ZCN9	Staphylococcus_virus	94.5	3.0e-42
AWE55680.1|1559714_1559951_+	hypothetical protein	NA	A1KX83	Staphylococcus_virus	94.9	4.9e-33
AWE56640.1|1559955_1560126_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	92.9	6.9e-21
AWE57241.1|1560118_1560649_+	dUTPase family protein	NA	B2ZYX2	Staphylococcus_phage	99.4	1.2e-95
AWE56945.1|1560685_1560892_+	hypothetical protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AWE55051.1|1560888_1561275_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AWE56004.1|1561271_1561445_+	transcriptional activator RinB family protein	NA	A0A0E3TAH3	Staphylococcus_phage	98.2	4.9e-22
AWE56963.1|1561445_1561592_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
AWE57132.1|1561615_1562038_+	phage transcriptional regulator, RinA family protein	NA	S4V7K2	Staphylococcus_phage	99.3	6.1e-74
AWE57465.1|1562224_1562665_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
AWE57264.1|1562651_1563929_+|terminase	phage terminase, large subunit, PBSX family	terminase	A0EWS5	Staphylococcus_virus	98.8	8.1e-247
AWE56829.1|1563939_1565475_+|portal	phage portal protein, SPP1 family	portal	A1KX25	Staphylococcus_virus	98.8	2.7e-289
AWE56771.1|1565481_1566477_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	E0Y3K7	Staphylococcus_virus	97.3	1.3e-180
AWE57309.1|1566558_1566732_+	hypothetical protein	NA	NA	NA	NA	NA
AWE55260.1|1566863_1567478_+	hypothetical protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
AWE56980.1|1567491_1568466_+|capsid	phage major capsid protein, HK97 family	capsid	I1W645	Staphylococcus_phage	98.5	7.7e-181
AWE55185.1|1568487_1568775_+	hypothetical protein	NA	E9LT47	Staphylococcus_phage	98.9	6.8e-45
AWE56617.1|1568783_1569116_+|head,tail	phage gp6-like head-tail connector family protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
AWE56506.1|1569414_1569762_+	hypothetical protein	NA	I1W643	Staphylococcus_phage	100.0	5.3e-60
AWE54998.1|1569773_1570157_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	100.0	2.6e-68
AWE56271.1|1570175_1570757_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
AWE57189.1|1570818_1571184_+	phage family protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
AWE56318.1|1571213_1571558_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
AWE55513.1|1571574_1575039_+	putative membrane protein	NA	Q4ZDU6	Staphylococcus_virus	91.9	3.9e-251
AWE55831.1|1575051_1575999_+|tail	phage tail family protein	tail	A0EWU0	Staphylococcus_virus	100.0	3.6e-183
AWE56343.1|1576007_1577909_+|tail	prophage endopeptidase tail family protein	tail	Q8SDT5	Staphylococcus_phage	99.8	0.0e+00
AWE57035.1|1577923_1579834_+	putative minor structural protein	NA	A0A0F6N4K2	Staphylococcus_phage	99.2	0.0e+00
AWE57411.1|1579833_1581657_+	hypothetical protein	NA	A0A0F6N3G2	Staphylococcus_phage	99.7	0.0e+00
AWE55355.1|1581656_1582034_+	hypothetical protein	NA	W5R9M2	Staphylococcus_phage	98.4	5.8e-60
AWE55016.1|1582034_1582217_+	hypothetical protein	NA	A0A2H4PQV2	Staphylococcus_phage	100.0	1.9e-29
AWE56051.1|1582257_1582557_+	hypothetical protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AWE56481.1|1582693_1584592_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	B2ZZ02	Staphylococcus_phage	98.6	0.0e+00
AWE55131.1|1584604_1585777_+	collagen triple helix repeat family protein	NA	A0A2I6PCW8	Staphylococcus_phage	99.2	4.1e-197
AWE55431.1|1585782_1586178_+	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	98.5	5.1e-67
AWE55186.1|1586233_1586671_+|holin	holin, phage phi LC3 family	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
AWE55220.1|1586651_1588097_+	CHAP domain protein	NA	A0A2H4PQR3	Staphylococcus_phage	100.0	8.2e-296
AWE55984.1|1588485_1589073_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
AWE55555.1|1589069_1589525_+	putative gp62	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
>prophage 5
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1790761	1805219	2786146	head,terminase,integrase,portal	Staphylococcus_phage(52.63%)	24	1784584:1784601	1808055:1808072
1784584:1784601	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
AWE57488.1|1790761_1791469_-|integrase	phage integrase, N-terminal SAM-like domain protein	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
AWE55570.1|1791521_1792217_-	host cell surface-exposed lipofamily protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.4e-06
AWE57157.1|1792228_1792612_-	hypothetical protein	NA	NA	NA	NA	NA
AWE56893.1|1792758_1793124_-	helix-turn-helix domain protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
AWE55547.1|1793546_1793828_+	hypothetical protein	NA	NA	NA	NA	NA
AWE57503.1|1793998_1794160_+	hypothetical protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
AWE56315.1|1794246_1794564_+	hypothetical protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
AWE56792.1|1794553_1794820_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
AWE55734.1|1794824_1795361_+	glycosyl hydrolases 17 family protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
AWE55938.1|1795361_1796141_+	bacterial dnaA family protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
AWE56280.1|1796167_1796716_+	putative single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.7e-92
AWE57538.1|1796729_1797668_+	dnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
AWE55239.1|1797668_1797959_+	phage family protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
AWE55995.1|1797973_1798132_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
AWE55771.1|1798137_1798314_+	hypothetical protein	NA	NA	NA	NA	NA
AWE55113.1|1798310_1798448_+	hypothetical protein	NA	NA	NA	NA	NA
AWE55913.1|1798440_1798971_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
AWE56763.1|1799216_1799681_+	putative small GTP-binding domain protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
AWE56180.1|1799765_1799915_+	putative membrane protein	NA	NA	NA	NA	NA
AWE56672.1|1799957_1800446_+	sigma-70, region 4 family protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
AWE57574.1|1800597_1801026_+	homeo-like domain protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
AWE56741.1|1801012_1802287_+|terminase	phage terminase, large subunit, PBSX family	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.2e-194
AWE55056.1|1802299_1803748_+|portal	phage portal protein, SPP1 family	portal	Q4ZE36	Staphylococcus_virus	69.2	4.1e-194
AWE57313.1|1803737_1805219_+|head	phage head morphogenesis, SPP1 gp7 family domain protein	head	Q4ZE35	Staphylococcus_virus	61.9	3.7e-110
1808055:1808072	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 6
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2076962	2085274	2786146		Staphylococcus_phage(16.67%)	7	NA	NA
AWE56825.1|2076962_2077748_-	AAA domain protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
AWE57207.1|2077873_2078764_-	putative endonuclease 4	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AWE57051.1|2078773_2080120_-	DEAD/DEAH box helicase family protein	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AWE57126.1|2080233_2081334_-	NIF3 family protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
AWE55219.1|2081336_2082014_-	hypothetical protein	NA	NA	NA	NA	NA
AWE56834.1|2082144_2083251_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AWE56585.1|2083474_2085274_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	6.6e-53
>prophage 7
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2154588	2163632	2786146	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AWE56836.1|2154588_2155107_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
AWE57151.1|2155128_2157402_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
AWE56564.1|2157605_2159885_-	protein-export membrane protein SecD	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AWE56091.1|2160159_2160420_-	preprotein translocase, YajC subunit	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AWE55663.1|2160438_2161578_-|tRNA	queuine tRNA-ribosyltransferase	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AWE57515.1|2161600_2162626_-|tRNA	tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AWE55358.1|2162627_2163632_-	holliday junction DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2288727	2336849	2786146	transposase,protease,tRNA	Staphylococcus_phage(86.84%)	49	NA	NA
AWE56098.1|2288727_2293518_-	sasC/Mrp/FmtB intercellular aggregation domain protein	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	1.7e-292
AWE56703.1|2293842_2294154_-	rhodanese-like domain protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
AWE55809.1|2294175_2296590_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
AWE56501.1|2296881_2298063_-	sugar (and other) transporter family protein	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
AWE55252.1|2298172_2299126_+	radical SAM superfamily protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	1.4e-78
AWE55537.1|2299122_2299686_+	methyltransferase domain protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
AWE55417.1|2299802_2300204_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA	NA
AWE56707.1|2300774_2301602_-	alpha/beta hydrolase fold family protein	NA	NA	NA	NA	NA
AWE57522.1|2301604_2301721_-	hypothetical protein	NA	NA	NA	NA	NA
AWE56606.1|2301835_2302837_+	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AWE55091.1|2302958_2303423_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AWE55065.1|2303435_2304617_-	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.8e-225
AWE57056.1|2304627_2305260_-	riboflavin synthase, alpha subunit	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
AWE56367.1|2305266_2306310_-	riboflavin biosynthesis protein RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
AWE56745.1|2306791_2308294_-	L-lysine 6-monooxygenase family protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AWE55644.1|2309250_2310543_+	arsenite/antimonite efflux pump membrane family protein	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
AWE55189.1|2310629_2311484_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AWE55926.1|2311758_2311983_-	hypothetical protein	NA	NA	NA	NA	NA
AWE56284.1|2312181_2312652_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
AWE55055.1|2312968_2313208_+	comK family protein	NA	NA	NA	NA	NA
AWE55144.1|2313194_2313638_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
AWE56798.1|2313934_2314141_+	putative membrane protein	NA	NA	NA	NA	NA
AWE55862.1|2314150_2314570_+|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWE55468.1|2314736_2315357_+|protease	CAAX protease self-immunity family protein	protease	NA	NA	NA	NA
AWE55216.1|2315856_2316570_-	transaldolase	NA	M1PR54	Cyanophage	35.3	1.2e-18
AWE55339.1|2316828_2317131_+	putative membrane protein	NA	NA	NA	NA	NA
AWE57239.1|2317386_2317752_+	crcB-like family protein	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
AWE57259.1|2317748_2318102_+	crcB-like family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
AWE55642.1|2318351_2319185_-	aldo/keto reductase family protein	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
AWE55777.1|2319396_2320305_-	nuclease-related domain protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
AWE55837.1|2320429_2321623_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
AWE56479.1|2321994_2323587_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
AWE57361.1|2323966_2324737_-	alpha/beta hydrolase family protein	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.8e-140
AWE55965.1|2324717_2325197_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	3.0e-85
AWE55614.1|2325256_2325514_+	putative membrane protein insertion efficiency factor	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
AWE55172.1|2325510_2326512_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
AWE56432.1|2326516_2327995_-	O-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
AWE55420.1|2328153_2328636_-	hypothetical protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.9e-79
AWE55762.1|2328947_2329562_+	excalibur calcium-binding domain protein	NA	A0A2H4PQM8	Staphylococcus_phage	68.1	4.6e-22
AWE55855.1|2329642_2330638_+	hypothetical protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
AWE57288.1|2330713_2331340_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
AWE55724.1|2331380_2331722_+	hypothetical protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
AWE56831.1|2331923_2332403_-	DDE domain protein	NA	A0A2I7SC85	Paenibacillus_phage	62.3	2.8e-51
AWE56780.1|2332429_2332729_-	HTH-like domain protein	NA	A0A2H4PQV6	Staphylococcus_phage	89.7	1.7e-25
AWE55379.1|2332770_2333052_-|transposase	transposase family protein	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
AWE56917.1|2333443_2333620_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	91.4	4.1e-24
AWE55155.1|2333929_2334583_-	hypothetical protein	NA	NA	NA	NA	NA
AWE55218.1|2334592_2336299_-	description family protein	NA	NA	NA	NA	NA
AWE56539.1|2336567_2336849_+|transposase	transposase family protein	transposase	A0A0C5AJ30	Paenibacillus_phage	64.5	6.5e-24
>prophage 9
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2466824	2512614	2786146	holin,capsid,integrase,portal,tail,protease,head	Staphylococcus_phage(98.51%)	67	2486248:2486265	2510595:2510612
AWE55735.1|2466824_2467022_+	phospholipase C domain protein	NA	A0A1P8L6A7	Staphylococcus_phage	93.8	8.3e-26
AWE55335.1|2467393_2467573_+	putative membrane protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
AWE57100.1|2467652_2467808_-	hypothetical protein	NA	A0A1P8L6A1	Staphylococcus_phage	100.0	1.4e-20
AWE56719.1|2467952_2468144_+	putative membrane protein	NA	M9NS66	Staphylococcus_phage	100.0	1.7e-23
AWE56139.1|2468196_2468547_-	complement inhibitor	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
AWE57052.1|2469230_2469680_+	chemotaxis inhibitory protein	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
AWE55330.1|2469774_2470071_-	bacterial SH3 domain protein	NA	A0A1P8L6B4	Staphylococcus_phage	100.0	1.3e-51
AWE55987.1|2470759_2471251_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
AWE56696.1|2471441_2472197_-	CHAP domain protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
AWE55384.1|2472208_2472463_-|holin	holin, phage phi LC3 family	holin	D2JLG4	Staphylococcus_phage	98.8	3.4e-40
AWE56211.1|2472674_2472809_-	putative membrane protein	NA	D2JLG3	Staphylococcus_phage	100.0	9.3e-13
AWE55265.1|2473000_2473297_-	hypothetical protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
AWE55683.1|2473354_2473642_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
AWE55480.1|2473688_2473841_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
AWE55249.1|2473830_2477616_-	phage minor structural, N-terminal region domain protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
AWE57274.1|2477631_2479116_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
AWE55099.1|2479112_2483642_-|tail	phage tail tape measure protein, TP901 family, core region	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
AWE56769.1|2483698_2483836_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
AWE55959.1|2483886_2484237_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
AWE57312.1|2484286_2484427_-	bacterial Ig-like domain family protein	NA	A0A2I6PDK6	Staphylococcus_phage	100.0	2.5e-16
AWE57030.1|2484552_2485197_-|tail	phage major tail, phi13 family protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
AWE55658.1|2485197_2485605_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
AWE55445.1|2485601_2486006_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
AWE56426.1|2486002_2486365_-|head,tail	phage head-tail joining family protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2486248:2486265	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AWE55108.1|2486348_2486633_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
AWE56195.1|2486622_2486907_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
AWE57019.1|2486926_2488072_-|capsid	phage major capsid protein, HK97 family	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
AWE56857.1|2488095_2488833_-|protease	clp protease family protein	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
AWE55623.1|2488816_2490004_-|portal	phage portal protein, HK97 family	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
AWE55103.1|2490019_2491681_-	phage Terminase family protein	NA	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
AWE56768.1|2491677_2492022_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
AWE57278.1|2492152_2492452_-	HNH endonuclease family protein	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
AWE56166.1|2492683_2493100_-	phage transcriptional regulator, RinA family protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
AWE55921.1|2493127_2493328_-	hypothetical protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
AWE56996.1|2493327_2493477_-	transcriptional activator RinB family protein	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
AWE56451.1|2493473_2493860_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
AWE55080.1|2493856_2494063_-	hypothetical protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
AWE57275.1|2494059_2494305_-	putative membrane protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
AWE56376.1|2494341_2494878_-	dUTPase family protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
AWE56607.1|2494870_2495041_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
AWE55455.1|2495027_2495282_-	hypothetical protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
AWE55525.1|2495296_2495539_-	phage family protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
AWE55737.1|2495542_2495911_-	PVL ORF-50-like family protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
AWE57363.1|2495923_2496328_-	endodeoxyribonuclease RusA family protein	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
AWE55709.1|2496336_2496555_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
AWE57303.1|2496561_2497455_-	dnaD domain protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
AWE56674.1|2497484_2497955_-	single-stranded DNA-binding family protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
AWE55338.1|2497955_2498441_-	beta-lactamase superfamily domain protein	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.4e-87
AWE56872.1|2498653_2499574_-	recombinase, phage RecT family protein	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
AWE55374.1|2499575_2501519_-	hypothetical protein	NA	S4V9K6	Staphylococcus_phage	99.8	0.0e+00
AWE55872.1|2501799_2502060_-	hypothetical protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
AWE55505.1|2502064_2502367_-	hypothetical protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
AWE57431.1|2502461_2502623_-	hypothetical protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
AWE57194.1|2502619_2502943_-	hypothetical protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
AWE55966.1|2502997_2503378_+	hypothetical protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
AWE56998.1|2503364_2503562_-	putative phi PVL orf 35-like protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
AWE57254.1|2503577_2504330_-	phage antirepressor KilAC domain protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
AWE56888.1|2504380_2504710_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
AWE55558.1|2504947_2505193_-	helix-turn-helix domain protein	NA	A0A2I6PF09	Staphylococcus_phage	100.0	6.9e-38
AWE56847.1|2505325_2506039_+	helix-turn-helix family protein	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
AWE56468.1|2506054_2506987_+	exonuclease family protein	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
AWE56460.1|2507537_2507720_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
AWE56334.1|2507819_2508284_+	putative lipoprotein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
AWE57368.1|2508342_2509380_+|integrase	integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	2.0e-179
AWE56104.1|2509436_2510261_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	100.0	6.8e-162
AWE57139.1|2510517_2511537_-	leucotoxin LukDv	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
2510595:2510612	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
AWE55892.1|2511558_2512614_-	hypothetical protein	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
