assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003073555.1_ASM307355v1	CP029038	Salmonella enterica strain CFSAN045763 chromosome, complete genome	2	1000743-1002053	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	2	2	1000894-1000925|1001931-1001962	CP029038.1_1455346-1455315|CP029038.1_532920-532889	I-E:I-E:I-E	21,21,21	21	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA|57aa|down_2|CP029038.1_1005077_1005248_+,NA|64aa|down_5|CP029038.1_1009040_1009232_-	NA|179aa|up_9|CP029038.1_989291_989828_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP029038.1_989824_990295_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP029038.1_990309_990816_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP029038.1_990835_991609_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP029038.1_991621_994321_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP029038.1_994400_994988_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP029038.1_995592_996393_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP029038.1_996620_998258_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP029038.1_998340_999639_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP029038.1_999774_1000446_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP029038.1_1003899_1004697_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP029038.1_1004786_1005149_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP029038.1_1005077_1005248_+	NA	NA|600aa|down_3|CP029038.1_1005572_1007372_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP029038.1_1007371_1009084_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|64aa|down_5|CP029038.1_1009040_1009232_-	NA	NA|245aa|down_6|CP029038.1_1009158_1009893_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_7|CP029038.1_1009980_1010934_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_8|CP029038.1_1011317_1014017_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_9|CP029038.1_1014374_1015910_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_003073555.1_ASM307355v1	CP029038	Salmonella enterica strain CFSAN045763 chromosome, complete genome	3	1002127-1003802	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	26,27,27	27	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA|57aa|down_2|CP029038.1_1005077_1005248_+,NA|64aa|down_5|CP029038.1_1009040_1009232_-	NA|179aa|up_9|CP029038.1_989291_989828_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP029038.1_989824_990295_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP029038.1_990309_990816_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP029038.1_990835_991609_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP029038.1_991621_994321_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP029038.1_994400_994988_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP029038.1_995592_996393_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP029038.1_996620_998258_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP029038.1_998340_999639_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP029038.1_999774_1000446_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP029038.1_1003899_1004697_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP029038.1_1004786_1005149_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP029038.1_1005077_1005248_+	NA	NA|600aa|down_3|CP029038.1_1005572_1007372_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP029038.1_1007371_1009084_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|64aa|down_5|CP029038.1_1009040_1009232_-	NA	NA|245aa|down_6|CP029038.1_1009158_1009893_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_7|CP029038.1_1009980_1010934_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_8|CP029038.1_1011317_1014017_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_9|CP029038.1_1014374_1015910_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_003073555.1_ASM307355v1	CP029038	Salmonella enterica strain CFSAN045763 chromosome, complete genome	4	1020347-1022755	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	39,39,39	39	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|245aa|up_9|CP029038.1_1009158_1009893_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP029038.1_1009980_1010934_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|CP029038.1_1011317_1014017_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|CP029038.1_1014374_1015910_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|CP029038.1_1015926_1016529_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|CP029038.1_1016545_1017610_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|CP029038.1_1017619_1018345_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|CP029038.1_1018344_1019049_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|CP029038.1_1019048_1019966_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP029038.1_1019968_1020262_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP029038.1_1022769_1023816_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP029038.1_1024066_1024975_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP029038.1_1024984_1026424_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP029038.1_1026410_1027016_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP029038.1_1027033_1027390_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP029038.1_1027580_1027892_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP029038.1_1027910_1028621_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP029038.1_1028620_1029100_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP029038.1_1029096_1030146_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP029038.1_1030126_1030888_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
