The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP026736	Bacillus megaterium strain YC4-R4 chromosome, complete genome	5129603	667837	677144	5129603		Bacillus_phage(33.33%)	8	NA	NA
AWD64165.1|667837_669355_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	32.1	8.6e-54
AWD64166.1|669378_670428_-	recombinase RecQ	NA	NA	NA	NA	NA
AWD64167.1|670685_670934_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	54.1	3.6e-18
AWD64168.1|671015_671591_-	ECF transporter S component	NA	NA	NA	NA	NA
AWD64169.1|672188_673763_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	30.2	7.6e-29
AWD64170.1|673794_674484_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A2D0ZM66	Rhodococcus_phage	41.5	7.2e-16
AWD64171.1|674655_676428_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.3	7.5e-25
AWD64172.1|676427_677144_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	42.2	2.2e-47
>prophage 2
CP026736	Bacillus megaterium strain YC4-R4 chromosome, complete genome	5129603	1538290	1548755	5129603		Bacillus_phage(33.33%)	8	NA	NA
AWD68438.1|1538290_1539523_-	PDZ domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	29.4	8.1e-10
AWD65010.1|1539580_1540375_-	MBL fold metallo-hydrolase	NA	A0A2H4J3R0	uncultured_Caudovirales_phage	35.1	5.4e-39
AWD65011.1|1540393_1541173_-	regulator	NA	NA	NA	NA	NA
AWD65012.1|1541159_1542527_-	hypothetical protein	NA	NA	NA	NA	NA
AWD65013.1|1542517_1544425_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	36.5	2.6e-39
AWD65014.1|1544431_1545139_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	42.0	2.4e-46
AWD65015.1|1545916_1547203_-	adenylosuccinate synthase	NA	A0A2P1EKE7	Megavirus	35.9	2.1e-69
AWD65016.1|1547390_1548755_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.1	1.5e-121
>prophage 3
CP026736	Bacillus megaterium strain YC4-R4 chromosome, complete genome	5129603	1819333	1827595	5129603		Synechococcus_phage(50.0%)	8	NA	NA
AWD65249.1|1819333_1820626_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.5	5.9e-19
AWD65250.1|1820700_1821408_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FGF0	Synechococcus_phage	39.3	2.7e-42
AWD65251.1|1821415_1821667_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AWD65252.1|1821663_1822350_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AWD65253.1|1822333_1824565_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	2.7e-157
AWD65254.1|1824540_1825956_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	4.3e-55
AWD65255.1|1825982_1827020_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F0L1	Synechococcus_phage	45.6	1.7e-69
AWD65256.1|1827016_1827595_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.8	9.6e-30
>prophage 4
CP026736	Bacillus megaterium strain YC4-R4 chromosome, complete genome	5129603	3777898	3786112	5129603		Bacillus_virus(83.33%)	7	NA	NA
AWD67039.1|3777898_3778675_+	NUDIX domain-containing protein	NA	G3MA14	Bacillus_virus	41.9	6.6e-34
AWD67040.1|3778747_3779296_+	isochorismatase	NA	G3MA16	Bacillus_virus	44.4	2.6e-32
AWD67041.1|3779319_3780789_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	48.2	2.5e-114
AWD67042.1|3780804_3781485_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	43.3	2.2e-41
AWD67043.1|3781519_3782341_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	64.4	3.9e-93
AWD67044.1|3782522_3782960_+	RNA-binding protein S1	NA	NA	NA	NA	NA
AWD67045.1|3783700_3786112_+	peptidase S8	NA	A0A217EQY2	Bacillus_phage	36.4	1.2e-17
>prophage 1
CP026740	Bacillus megaterium strain YC4-R4 plasmid unnamed4	98205	6871	84121	98205	coat,integrase	Bacillus_phage(15.38%)	56	23653:23681	90659:90687
AWD68739.1|6871_7804_-|integrase	integrase	integrase	NA	NA	NA	NA
AWD68740.1|7982_9371_-	replication initiation protein	NA	A0A1V0E006	Clostridioides_phage	28.3	1.2e-09
AWD68741.1|10363_11257_+	transcriptional regulator	NA	Q2I8D8	Bacillus_phage	29.9	9.7e-21
AWD68742.1|11433_25245_+	hypothetical protein	NA	A0A2I2L613	Orpheovirus	25.0	2.7e-05
23653:23681	attL	GTGGTAAATGCAGATGGAACGTTTAGCTA	NA	NA	NA	NA
AWD68743.1|25397_25925_+	adenylate kinase DNA topology modulator	NA	NA	NA	NA	NA
AWD68744.1|26345_26834_-|coat	spore coat protein X	coat	NA	NA	NA	NA
AWD68745.1|26942_27644_-	peptidase	NA	NA	NA	NA	NA
AWD68746.1|27845_28250_-	DUF4183 domain-containing protein	NA	NA	NA	NA	NA
AWD68747.1|28568_28853_+	DUF4183 domain-containing protein	NA	NA	NA	NA	NA
AWD68748.1|28938_29508_-	collagen-like protein	NA	NA	NA	NA	NA
AWD68749.1|30106_30583_+	hypothetical protein	NA	NA	NA	NA	NA
AWD68750.1|31011_31524_+	exosporium protein D	NA	NA	NA	NA	NA
AWD68751.1|31693_32194_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68752.1|32425_33481_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68753.1|33486_34662_-	carbamoyl-phosphate synthase	NA	NA	NA	NA	NA
AWD68754.1|34665_35970_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AWD68755.1|35966_36623_-	PIG-L domain-containing protein	NA	A0A2D2W2P2	Stenotrophomonas_phage	24.5	5.6e-10
AWD68756.1|37182_37926_+	hypothetical protein	NA	NA	NA	NA	NA
AWD68757.1|38068_38890_-	YncE family protein	NA	NA	NA	NA	NA
AWD68758.1|39186_39402_+|coat	spore coat protein	coat	NA	NA	NA	NA
AWD68759.1|39540_40101_+|coat	spore coat protein X	coat	NA	NA	NA	NA
AWD68760.1|40126_40555_+|coat	spore coat protein	coat	NA	NA	NA	NA
AWD68761.1|40761_41196_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68762.1|41439_42756_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AWD68763.1|42757_42976_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68764.1|42991_43516_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68765.1|43661_44378_-	glycosyl transferase family 2	NA	NA	NA	NA	NA
AWD68766.1|44532_45615_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AWD68767.1|45649_46894_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AWD68768.1|47465_48197_-	glycosyl transferase	NA	NA	NA	NA	NA
AWD68769.1|48473_49364_-	UDP-2-acetamido-2,6-dideoxy-hexulose 4-reductase	NA	A0A222YY99	Synechococcus_phage	26.5	1.4e-19
AWD68770.1|49579_50803_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AWD68771.1|50917_51835_+	UDP-glucose 4-epimerase	NA	A0A0E3I8S3	Synechococcus_phage	32.6	1.1e-38
AWD68772.1|51972_52596_+	peptidase	NA	A0A1V0SAM1	Catovirus	32.1	6.1e-06
AWD68773.1|52905_53094_+	hypothetical protein	NA	NA	NA	NA	NA
AWD68774.1|53298_54123_-	SDR family NAD(P)-dependent oxidoreductase	NA	A0A2P1ELT6	Moumouvirus	35.9	4.6e-33
AWD68775.1|54123_55110_-	UDP-N-acetylglucosamine 4,6-dehydratase	NA	A0A1V0SAI8	Catovirus	33.5	1.3e-45
AWD68776.1|55102_56194_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A2P1ELS7	Moumouvirus	47.5	8.9e-93
AWD68777.1|56597_57293_-	peptidase	NA	NA	NA	NA	NA
AWD68778.1|57433_58114_-	peptidase	NA	NA	NA	NA	NA
AWD68779.1|58326_59574_-	peptidase S8	NA	A0A1B0T6A2	Bacillus_phage	52.9	1.0e-100
AWD68780.1|60685_60874_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68781.1|61082_61325_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68782.1|61397_61679_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68783.1|62173_63514_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	27.3	1.1e-39
AWD68784.1|71965_72577_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.4	1.4e-15
AWD68785.1|72757_72955_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
AWD68786.1|73033_73438_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68787.1|73505_74354_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68788.1|74541_75276_+	hypothetical protein	NA	NA	NA	NA	NA
AWD68789.1|75463_76123_+	peptidase	NA	NA	NA	NA	NA
AWD68790.1|79070_79328_+	hypothetical protein	NA	NA	NA	NA	NA
AWD68802.1|79821_80154_+	hypothetical protein	NA	NA	NA	NA	NA
AWD68791.1|80293_80965_-	hypothetical protein	NA	NA	NA	NA	NA
AWD68792.1|81577_82153_-	DUF3967 domain-containing protein	NA	NA	NA	NA	NA
AWD68793.1|83188_84121_-|integrase	integrase	integrase	NA	NA	NA	NA
90659:90687	attR	GTGGTAAATGCAGATGGAACGTTTAGCTA	NA	NA	NA	NA
