The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028514	Carboxydocella thermautotrophica strain 41 chromosome, complete genome	2690058	144075	156952	2690058		Synechococcus_phage(22.22%)	9	NA	NA
AVX29769.1|144075_147849_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.2	2.1e-32
AVX29770.1|148269_149640_+	putative MFS transporter, AGZA family, xanthine/uracil permease	NA	A0A0R6PHV4	Moraxella_phage	33.9	8.3e-56
AVX29771.1|149666_150191_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	1.3e-25
AVX29772.1|150307_151600_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.4	2.3e-23
AVX29773.1|151625_152333_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3HI61	Synechococcus_phage	42.8	1.9e-40
AVX29774.1|152351_153761_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	37.0	3.8e-64
AVX29775.1|153757_154786_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.6	1.4e-68
AVX29776.1|154787_155414_+	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	42.5	1.4e-29
AVX29777.1|155413_156952_+	IMP cyclohydrolase phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	Q58MG4	Prochlorococcus_phage	53.7	1.7e-81
>prophage 2
CP028514	Carboxydocella thermautotrophica strain 41 chromosome, complete genome	2690058	331720	339515	2690058		Pseudomonas_phage(16.67%)	10	NA	NA
AVX29949.1|331720_332788_+	bacterial peptide chain release factor 1 (bRF-1)	NA	W8EDB3	Pseudomonas_phage	45.2	7.8e-09
AVX29950.1|332799_333669_+	[protein release factor]-glutamine N5-methyltransferase	NA	NA	NA	NA	NA
AVX29951.1|333673_334702_+	translation factor SUA5	NA	A0A291ATS8	Pandoravirus	43.1	5.3e-55
AVX29952.1|334703_335156_+	protein-tyrosine phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	33.6	1.2e-06
AVX29953.1|335180_335630_+	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
AVX29954.1|335655_336903_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.8	6.6e-100
AVX29955.1|336924_337554_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AVX29956.1|337566_338025_+	dCMP deaminase	NA	A0A1D8ESY8	Mycobacterium_phage	48.0	4.8e-24
AVX29957.1|338021_338351_+	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA	NA	NA	NA	NA
AVX29958.1|338411_339515_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing)	NA	A0A1V0SAG5	Catovirus	29.3	7.5e-23
>prophage 3
CP028514	Carboxydocella thermautotrophica strain 41 chromosome, complete genome	2690058	1154473	1165601	2690058		Staphylococcus_phage(42.86%)	10	NA	NA
AVX30748.1|1154473_1156348_+	serine/threonine protein kinase	NA	W5S4J6	Pithovirus	33.2	1.7e-19
AVX30749.1|1156358_1157225_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AVX30750.1|1157227_1157881_+	ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA	NA
AVX30751.1|1157882_1158908_+	Acetoin utilization deacetylase AcuC	NA	A0A2K9L473	Tupanvirus	38.6	2.4e-39
AVX30752.1|1159165_1160329_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase	NA	A0A1V0SE20	Indivirus	34.8	1.0e-46
AVX30753.1|1160331_1160988_+	riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	41.7	5.4e-37
AVX30754.1|1161000_1162212_+	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.9	1.0e-105
AVX30755.1|1162236_1162710_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	59.3	5.8e-41
AVX30756.1|1162855_1164355_+	hypothetical protein	NA	NA	NA	NA	NA
AVX30757.1|1164428_1165601_+	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6)	NA	B6DZZ7	Stx2-converting_phage	31.9	5.0e-33
>prophage 4
CP028514	Carboxydocella thermautotrophica strain 41 chromosome, complete genome	2690058	1361432	1370377	2690058	protease	Halovirus(14.29%)	10	NA	NA
AVX30964.1|1361432_1362167_+	Organic radical activating enzyme	NA	R4TAH8	Halovirus	29.9	4.1e-09
AVX30965.1|1362180_1362741_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	57.1	1.4e-49
AVX30966.1|1362762_1362942_+	Protein of unknown function (DUF4264)	NA	NA	NA	NA	NA
AVX30967.1|1362956_1364234_+	putative tyrosine transporter P-protein	NA	NA	NA	NA	NA
AVX30968.1|1364245_1365013_+	5'-nucleotidase /3'-nucleotidase /exopolyphosphatase	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	40.4	6.7e-47
AVX30969.1|1365124_1365586_+	hypothetical protein	NA	NA	NA	NA	NA
AVX30970.1|1365609_1367091_+|protease	ATP-dependent metalloprotease FtsH	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	41.5	1.7e-75
AVX30971.1|1367162_1367669_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	41.5	1.1e-21
AVX30972.1|1367672_1369277_+	ATP-dependent RNA helicase DeaD	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	39.8	1.7e-68
AVX30973.1|1369351_1370377_+	recombination protein RecA	NA	A0A0S2MVG1	Bacillus_phage	66.9	1.0e-122
>prophage 5
CP028514	Carboxydocella thermautotrophica strain 41 chromosome, complete genome	2690058	2193001	2240846	2690058	tail,integrase,transposase,terminase,capsid,tRNA,portal	Clostridium_phage(17.65%)	58	2191348:2191361	2197085:2197098
2191348:2191361	attL	TCCAGCAGCCGGGC	NA	NA	NA	NA
AVX31757.1|2193001_2194429_-|transposase	Putative transposase DNA-binding domain-containing protein	transposase	F9VHY8	Thermus_phage	27.4	4.2e-18
AVX31758.1|2194382_2195042_-|integrase	putative site-specific integrase-resolvase	integrase	Q331V0	Clostridium_botulinum_C_phage	45.0	1.1e-45
AVX31759.1|2195104_2195332_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31760.1|2195470_2198695_+	Superfamily II DNA or RNA helicase, SNF2 family	NA	A0A2L0WU59	Oxyplax_ochracea_nucleopolyhedrovirus	28.1	5.2e-40
2197085:2197098	attR	GCCCGGCTGCTGGA	NA	NA	NA	NA
AVX31761.1|2198752_2199547_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AVX31762.1|2199587_2200148_-	putative nucleic acid-binding protein, contains PIN domain	NA	NA	NA	NA	NA
AVX31763.1|2200137_2200872_-	Zn-dependent peptidase ImmA, M78 family	NA	NA	NA	NA	NA
AVX31764.1|2200874_2201222_-	Transcriptional regulator, contains XRE-family HTH domain	NA	NA	NA	NA	NA
AVX31765.1|2201485_2202058_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31766.1|2202281_2203526_-|transposase	IS4 transposase	transposase	NA	NA	NA	NA
AVX31767.1|2203866_2204070_-	Protein of unknown function, DUF488	NA	NA	NA	NA	NA
AVX31768.1|2204666_2205152_-|tRNA	tRNA(adenine34) deaminase	tRNA	NA	NA	NA	NA
AVX31769.1|2205565_2206771_-	MFS transporter, YNFM family, putative membrane transport protein	NA	NA	NA	NA	NA
AVX31770.1|2206837_2208109_-|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.4	6.5e-95
AVX31771.1|2208256_2208901_-	alpha-ribazole phosphatase/probable phosphoglycerate mutase	NA	NA	NA	NA	NA
AVX31772.1|2208930_2210508_-	D-3-phosphoglycerate dehydrogenase	NA	A0A1M7XU89	Cedratvirus	35.5	1.0e-49
AVX31773.1|2210554_2211700_-	L-aspartate aminotransferase apoenzyme /phosphoserine aminotransferase apoenzyme	NA	NA	NA	NA	NA
AVX31774.1|2212376_2212946_-	pyridoxal phosphate synthase yaaE subunit	NA	NA	NA	NA	NA
AVX31775.1|2212947_2213829_-	pyridoxal phosphate synthase yaaD subunit	NA	NA	NA	NA	NA
AVX31776.1|2213977_2214520_-	Cytochrome c7	NA	NA	NA	NA	NA
AVX31777.1|2214535_2214649_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31778.1|2214612_2215380_-	Cytochrome b subunit of formate dehydrogenase	NA	NA	NA	NA	NA
AVX31779.1|2215391_2216282_-	Doubled CXXCH motif	NA	NA	NA	NA	NA
AVX31780.1|2216309_2216501_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31781.1|2216514_2216709_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31782.1|2216796_2216988_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31783.1|2217087_2217411_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31784.1|2218995_2219418_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31785.1|2219442_2219976_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31786.1|2220120_2220423_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31787.1|2220423_2222007_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31788.1|2222020_2222446_-	hypothetical protein	NA	A0A159B6I9	Gordonia_phage	57.8	4.4e-32
AVX31789.1|2222429_2222693_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31790.1|2222696_2223347_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A7RTQ5	Clostridium_phage	36.1	4.4e-15
AVX31791.1|2223348_2223591_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31792.1|2223649_2224552_-	hypothetical protein	NA	A0A1L2K2Q1	Aeribacillus_phage	31.7	1.5e-05
AVX31793.1|2224559_2224751_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31794.1|2224755_2225904_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31795.1|2225905_2227798_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31796.1|2227797_2228154_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31797.1|2228158_2230840_-	tape measure domain-containing protein	NA	M1HMP3	Bacillus_virus	39.8	9.3e-27
AVX31798.1|2230841_2230988_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31799.1|2231055_2231412_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31800.1|2231434_2231839_-|tail	Phage tail tube protein	tail	A0A1B0XTL5	Freshwater_phage	55.6	9.4e-32
AVX31801.1|2231853_2232573_-	hypothetical protein	NA	A0A1B0XTM3	Freshwater_phage	39.9	3.6e-34
AVX31802.1|2232572_2232734_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31803.1|2232730_2233123_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31804.1|2233135_2233489_-|tail	Bacteriophage HK97-gp10, putative tail-component	tail	A0A1J0MCP5	Streptomyces_phage	30.7	6.5e-05
AVX31805.1|2233499_2233796_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31806.1|2233789_2234257_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31807.1|2234272_2234404_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31808.1|2234450_2235404_-|capsid	phage major capsid protein, HK97 family	capsid	D2J006	Enterococcus_phage	59.4	2.7e-98
AVX31809.1|2235425_2236010_-	protein of unknown function (DUF4355)	NA	NA	NA	NA	NA
AVX31810.1|2236108_2236285_-	hypothetical protein	NA	NA	NA	NA	NA
AVX31811.1|2236290_2237712_-	Phage Mu protein F like protein	NA	B5LPR2	Bacillus_virus	21.0	7.7e-12
AVX31812.1|2237711_2239151_-|portal	Phage portal protein, SPP1 Gp6-like	portal	A0A0N7GFE4	Paenibacillus_phage	35.3	9.1e-45
AVX31813.1|2239150_2240410_-|terminase	phage terminase, large subunit, PBSX family	terminase	B6CXD2	Clostridium_phage	50.7	4.6e-117
AVX31814.1|2240399_2240846_-|terminase	phage terminase small subunit	terminase	A0A0A8WDX8	Clostridium_phage	60.9	2.6e-35
