The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	0	2892	1680898		Synechococcus_phage(50.0%)	3	NA	NA
AVV96159.1|999_1605_+	lipopolysaccharide biosynthesis protein	NA	A0A1D8KNF8	Synechococcus_phage	26.0	8.3e-08
AVV96160.1|1553_2318_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
AVV96161.1|2370_2892_+	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	47.0	1.1e-37
>prophage 2
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	22505	30429	1680898	tRNA	Vibrio_phage(25.0%)	7	NA	NA
AVV96178.1|22505_23192_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A1B0Z0B4	Vibrio_phage	51.1	8.1e-60
AVV96179.1|23254_24463_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	30.9	2.6e-45
AVV96180.1|24628_25486_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
AVV96181.1|26305_27625_+|tRNA	glutamate--tRNA ligase	tRNA	A0A1V0SI74	Klosneuvirus	22.8	2.4e-12
AVV96182.1|27621_27915_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96183.1|27928_29611_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AVV96184.1|29607_30429_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	47.0	9.4e-63
>prophage 3
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	37088	42052	1680898		Mamastrovirus(100.0%)	3	NA	NA
AVV96191.1|37088_38171_+	aminofutalosine synthase MqnE	NA	A9ZMK9	Mamastrovirus	31.4	5.8e-12
AVV96192.1|38253_40989_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AVV97603.1|40900_42052_+	dehypoxanthine futalosine cyclase	NA	A9ZMK9	Mamastrovirus	42.3	1.3e-22
>prophage 4
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	46989	49246	1680898		Salmonella_phage(33.33%)	3	NA	NA
AVV96197.1|46989_47421_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	44.0	6.1e-29
AVV96198.1|47429_48152_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	37.4	2.1e-26
AVV96199.1|48148_49246_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	38.1	5.8e-60
>prophage 5
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	63262	72890	1680898	integrase	Clostridioides_phage(25.0%)	11	51628:51644	73359:73375
51628:51644	attL	AAAAAAGCGCTCTGCCT	NA	NA	NA	NA
AVV96206.1|63262_64330_+|integrase	integrase	integrase	A0A2R2ZHE2	Clostridioides_phage	28.6	3.5e-09
AVV96207.1|64392_64899_-	cysteine methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	53.2	3.3e-26
AVV96208.1|64902_65670_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96209.1|65783_66731_-	oxidoreductase	NA	NA	NA	NA	NA
AVV96210.1|66792_69159_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	38.4	5.5e-140
AVV96211.1|69324_69819_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96212.1|69858_70254_-	pantothenate kinase	NA	NA	NA	NA	NA
AVV96213.1|70546_71029_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96214.1|71052_71202_-	pantothenate kinase	NA	NA	NA	NA	NA
AVV96215.1|71208_71388_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96216.1|71588_72890_-	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	32.5	1.2e-27
73359:73375	attR	AAAAAAGCGCTCTGCCT	NA	NA	NA	NA
>prophage 6
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	91441	93928	1680898		Bacillus_phage(100.0%)	1	NA	NA
AVV96229.1|91441_93928_+	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	31.9	3.3e-103
>prophage 7
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	97144	99952	1680898		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
AVV97605.1|97144_99952_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	50.8	3.0e-262
>prophage 8
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	108496	111390	1680898	tRNA	Staphylococcus_phage(50.0%)	3	NA	NA
AVV96241.1|108496_109219_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.9	4.1e-22
AVV96242.1|109231_109633_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AVV96243.1|109629_111390_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	40.2	1.0e-42
>prophage 9
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	135833	143431	1680898	tRNA	Hokovirus(33.33%)	8	NA	NA
AVV96264.1|135833_136790_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	34.8	1.3e-47
AVV97606.1|136862_138008_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
AVV96265.1|138030_138765_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96266.1|138785_139241_-	GTPase	NA	NA	NA	NA	NA
AVV96267.1|139377_140361_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	24.8	7.2e-09
AVV96268.1|140311_141571_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96269.1|141581_142763_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
AVV96270.1|142759_143431_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.9	5.4e-24
>prophage 10
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	148684	150323	1680898	tRNA	Pandoravirus(50.0%)	3	NA	NA
AVV97607.1|148684_149317_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	A0A291ATS8	Pandoravirus	29.8	9.0e-05
AVV96276.1|149318_149441_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96277.1|149444_150323_+	carbon-nitrogen hydrolase	NA	M1HCD5	Acanthocystis_turfacea_Chlorella_virus	39.0	8.5e-46
>prophage 11
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	155900	156782	1680898		uncultured_phage(100.0%)	1	NA	NA
AVV96283.1|155900_156782_+	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	47.6	2.1e-07
>prophage 12
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	163986	169962	1680898	tRNA	Bacillus_phage(33.33%)	4	NA	NA
AVV96291.1|163986_165294_-	N-acetylmuramoyl-L-alanine amidase	NA	M4ZRP4	Bacillus_phage	49.5	5.8e-14
AVV96292.1|165300_166392_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AVV96293.1|166402_167611_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	27.6	2.1e-26
AVV96294.1|167634_169962_-	penta-phosphate guanosine-3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	38.3	4.0e-10
>prophage 13
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	185321	191290	1680898	protease	Organic_Lake_phycodnavirus(25.0%)	5	NA	NA
AVV96306.1|185321_186524_-	restriction endonuclease subunit S	NA	F2Y1N5	Organic_Lake_phycodnavirus	26.5	7.2e-11
AVV96307.1|186559_188620_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.3	3.1e-107
AVV96308.1|188644_190165_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AVV96309.1|190167_190695_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.0	1.1e-16
AVV96310.1|190699_191290_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	56.1	1.7e-53
>prophage 14
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	196303	199959	1680898		Staphylococcus_phage(66.67%)	4	NA	NA
AVV96318.1|196303_196882_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.0	2.9e-42
AVV96319.1|196971_197811_-	DUF3943 domain-containing protein	NA	NA	NA	NA	NA
AVV96320.1|197899_198934_-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	52.9	6.1e-51
AVV96321.1|199104_199959_-	lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B)	NA	A0A1S5NQ44	Burkholderia_phage	31.5	1.9e-10
>prophage 15
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	211804	212446	1680898		Bacillus_virus(100.0%)	1	NA	NA
AVV96335.1|211804_212446_+	osmoprotection ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.6	1.6e-33
>prophage 16
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	216584	221911	1680898		Staphylococcus_phage(25.0%)	6	NA	NA
AVV96341.1|216584_216905_+	thiol reductase thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	45.9	1.2e-21
AVV96342.1|216910_217846_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	41.2	4.4e-56
AVV96343.1|218053_218875_+	lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B)	NA	A0A1S5NQ44	Burkholderia_phage	26.7	2.1e-09
AVV96344.1|219093_219342_-	RNA-binding protein	NA	NA	NA	NA	NA
AVV96345.1|219663_220344_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AVV96346.1|220465_221911_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	42.5	6.9e-101
>prophage 17
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	227290	227575	1680898		Shigella_phage(100.0%)	1	NA	NA
AVV96352.1|227290_227575_+	HU family DNA-binding protein	NA	C8XUL7	Shigella_phage	40.2	2.5e-07
>prophage 18
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	231289	232291	1680898		Catovirus(100.0%)	1	NA	NA
AVV96356.1|231289_232291_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	A0A1V0SAI8	Catovirus	36.7	1.8e-44
>prophage 19
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	236662	249552	1680898		Tupanvirus(28.57%)	10	NA	NA
AVV96362.1|236662_239662_-	DEAD/DEAH box helicase	NA	A0A220A398	Liberibacter_phage	24.0	1.4e-31
AVV96363.1|239663_240251_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
AVV96364.1|240260_241832_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.1	2.1e-103
AVV96365.1|241795_241993_-	type I restriction endonuclease	NA	NA	NA	NA	NA
AVV96366.1|242010_242697_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AVV96367.1|243653_245255_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	27.4	3.0e-49
AVV97609.1|245502_246486_+	GMP reductase	NA	G3MBI2	Bacillus_virus	76.6	1.1e-142
AVV96368.1|246606_247185_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	31.7	6.5e-18
AVV96369.1|247177_248563_-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	NA	A0A0K0KVL9	Prochlorococcus_phage	44.9	8.5e-24
AVV96370.1|248559_249552_-	ADP-glyceromanno-heptose 6-epimerase	NA	A0A2K9L4U8	Tupanvirus	30.3	8.2e-21
>prophage 20
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	253806	254244	1680898		Bacteriophage(100.0%)	1	NA	NA
AVV96376.1|253806_254244_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	48.1	4.3e-30
>prophage 21
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	261894	263412	1680898		Tupanvirus(100.0%)	1	NA	NA
AVV96387.1|261894_263412_-	catalase	NA	A0A2K9L0T1	Tupanvirus	47.8	2.8e-105
>prophage 22
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	272949	274347	1680898	tRNA	Catovirus(100.0%)	1	NA	NA
AVV96394.1|272949_274347_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	35.1	4.5e-49
>prophage 23
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	278515	279283	1680898		Indivirus(100.0%)	1	NA	NA
AVV96396.1|278515_279283_-	iron chelating transport ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.5	2.9e-13
>prophage 24
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	296771	300548	1680898		Phaeocystis_globosa_virus(33.33%)	3	NA	NA
AVV96412.1|296771_297356_+	restriction endonuclease	NA	R4THR6	Phaeocystis_globosa_virus	34.9	5.0e-26
AVV97611.1|297377_298517_+	SAM-dependent methyltransferase	NA	A0A1V0SF64	Hokovirus	31.7	9.1e-48
AVV96413.1|298520_300548_+	ATP-dependent DNA helicase	NA	A7KV33	Bacillus_phage	27.9	1.1e-56
>prophage 25
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	327234	331516	1680898		Vibrio_phage(33.33%)	6	NA	NA
AVV96425.1|327234_327777_+	GTP cyclohydrolase I FolE	NA	A0A088F7Y4	Vibrio_phage	45.6	1.8e-38
AVV96426.1|327792_328704_+	geranyl transferase	NA	NA	NA	NA	NA
AVV96427.1|328700_329504_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	26.8	1.4e-18
AVV96428.1|329500_330160_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96429.1|330161_330764_+	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA	NA	NA	NA	NA
AVV96430.1|330760_331516_+	7-carboxy-7-deazaguanine synthase QueE	NA	I7II84	Campylobacter_virus	37.2	2.3e-39
>prophage 26
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	336608	338369	1680898	transposase	Helicobacter_phage(100.0%)	2	NA	NA
AVV96434.1|336608_337004_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	97.7	3.4e-71
AVV96435.1|337040_338369_+|transposase	transposase	transposase	A0A1S5RHD5	Helicobacter_phage	84.3	2.3e-172
>prophage 27
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	342122	343256	1680898		Yellowstone_lake_mimivirus(100.0%)	1	NA	NA
AVV96437.1|342122_343256_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	28.8	6.5e-30
>prophage 28
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	352839	356148	1680898		Pseudomonas_phage(50.0%)	5	NA	NA
AVV96446.1|352839_353496_+	damage-inducible protein CinA	NA	B5TK85	Pseudomonas_phage	36.8	7.3e-18
AVV96447.1|353498_354065_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96448.1|354340_354559_-	nitroreductase	NA	NA	NA	NA	NA
AVV96449.1|354555_355410_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AVV97616.1|355419_356148_-	RNA pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	30.1	2.7e-05
>prophage 29
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	366898	369961	1680898		Leptospira_phage(100.0%)	1	NA	NA
AVV96458.1|366898_369961_-	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	26.1	3.9e-85
>prophage 30
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	374532	375591	1680898		Pseudoalteromonas_phage(100.0%)	1	NA	NA
AVV96461.1|374532_375591_+	hypothetical protein	NA	A0A2D1GN01	Pseudoalteromonas_phage	30.8	5.3e-10
>prophage 31
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	394170	395424	1680898		Lactobacillus_phage(100.0%)	1	NA	NA
AVV96478.1|394170_395424_+	DHH family protein	NA	K4I4F4	Lactobacillus_phage	24.7	1.7e-10
>prophage 32
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	404261	407553	1680898	tRNA	Hokovirus(50.0%)	2	NA	NA
AVV96487.1|404261_406214_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	34.2	3.7e-81
AVV96488.1|406383_407553_+	SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	35.4	1.4e-51
>prophage 33
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	411508	419533	1680898	tRNA	Hokovirus(33.33%)	7	NA	NA
AVV96491.1|411508_413035_-	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	31.6	1.8e-19
AVV96492.1|413031_413529_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96493.1|413701_416092_-	biotin sulfoxide reductase	NA	A0A077SK27	Escherichia_phage	27.9	5.2e-61
AVV96494.1|416195_416786_-	DUF3972 domain-containing protein	NA	NA	NA	NA	NA
AVV96495.1|416811_418134_-	cysteine desulfurase	NA	NA	NA	NA	NA
AVV96496.1|418151_418466_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
AVV96497.1|418546_419533_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	33.9	1.6e-32
>prophage 34
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	426329	427904	1680898		Cedratvirus(100.0%)	1	NA	NA
AVV96503.1|426329_427904_+	phosphoglycerate dehydrogenase	NA	A0A2R8FCS0	Cedratvirus	32.3	1.2e-37
>prophage 35
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	431218	437530	1680898		Bacillus_thuringiensis_phage(75.0%)	6	NA	NA
AVV96507.1|431218_432154_+	fused signal transduction protein/response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	3.8e-36
AVV96508.1|432211_434626_+	hybrid sensor histidine kinase/response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	24.2	1.3e-11
AVV96509.1|434622_435120_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AVV96510.1|435377_435878_-	thiol peroxidase	NA	NA	NA	NA	NA
AVV96511.1|436102_436744_+	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	33.7	1.0e-27
AVV96512.1|436798_437530_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	S5VMD2	Pseudomonas_phage	30.4	6.9e-17
>prophage 36
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	445044	446307	1680898		Moumouvirus(100.0%)	1	NA	NA
AVV96521.1|445044_446307_-	fucosyltransferase	NA	A0A2P1EMF9	Moumouvirus	26.7	8.0e-13
>prophage 37
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	454408	454975	1680898		Pseudomonas_phage(100.0%)	1	NA	NA
AVV96528.1|454408_454975_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	61.8	1.1e-57
>prophage 38
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	458443	468142	1680898	tRNA,transposase	Helicobacter_phage(28.57%)	10	NA	NA
AVV96532.1|458443_459727_-|transposase	transposase	transposase	A0A1S5REX3	Helicobacter_phage	86.4	1.9e-203
AVV96533.1|459796_460225_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
AVV96534.1|460302_460989_+	type II restriction endonuclease	NA	A0A076FMQ7	Aureococcus_anophage	38.9	7.4e-29
AVV97620.1|461631_462225_+	Laminin subunit alpha-2 precursor	NA	NA	NA	NA	NA
AVV96535.1|462221_463349_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2K9L0G1	Tupanvirus	29.7	2.5e-26
AVV96536.1|463672_464698_+	ribonucleoside-diphosphate reductase subunit beta	NA	A2PYN0	Cyanophage	34.3	9.3e-52
AVV96537.1|464707_465337_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	38.8	2.3e-21
AVV96538.1|465347_466385_+	LptF/LptG family permease	NA	NA	NA	NA	NA
AVV96539.1|466385_467114_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AVV96540.1|467107_468142_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	35.8	4.0e-42
>prophage 39
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	474643	478829	1680898		Synechococcus_phage(50.0%)	4	NA	NA
AVV96546.1|474643_475921_+	glucose-6-phosphate dehydrogenase	NA	E3SKF6	Synechococcus_phage	35.6	1.1e-54
AVV96547.1|475931_476615_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
AVV96548.1|476601_477612_+	glucokinase	NA	NA	NA	NA	NA
AVV96549.1|477782_478829_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	42.8	1.3e-69
>prophage 40
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	487030	495298	1680898		Helicobacter_phage(66.67%)	6	NA	NA
AVV96558.1|487030_488353_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	34.2	1.3e-21
AVV96559.1|488417_489251_+	outer membrane protein	NA	NA	NA	NA	NA
AVV97621.1|489261_491238_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
AVV96560.1|491308_491926_-	hypothetical protein	NA	A0A1S5RH87	Helicobacter_phage	80.3	8.3e-72
AVV96561.1|491922_492117_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97622.1|492076_495298_-	hypothetical protein	NA	A0A1S5RG98	Helicobacter_phage	79.3	0.0e+00
>prophage 41
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	502299	506807	1680898		Streptococcus_phage(33.33%)	4	NA	NA
AVV96566.1|502299_503346_-	DNA (cytosine-5-)-methyltransferase	NA	M1PSQ0	Streptococcus_phage	36.8	3.2e-55
AVV96567.1|503436_504060_-	restriction endonuclease	NA	NA	NA	NA	NA
AVV96568.1|504062_504992_-	restriction endonuclease	NA	Q5GQR9	Synechococcus_phage	45.6	5.8e-69
AVV96569.1|505007_506807_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	28.4	6.9e-26
>prophage 42
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	510528	512835	1680898	tRNA	Escherichia_phage(50.0%)	2	NA	NA
AVV96571.1|510528_511920_+|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	28.2	3.7e-11
AVV96572.1|512037_512835_-	molybdenum ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	3.5e-22
>prophage 43
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	533140	534475	1680898		Powai_lake_megavirus(100.0%)	1	NA	NA
AVV96587.1|533140_534475_+	peptidase M16	NA	A0A167R9K4	Powai_lake_megavirus	26.0	1.1e-28
>prophage 44
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	539030	547644	1680898	protease	uncultured_Mediterranean_phage(25.0%)	8	NA	NA
AVV96593.1|539030_540461_+|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.4	4.1e-29
AVV96594.1|540482_541703_+	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AVV96595.1|541724_542621_+	response regulator	NA	NA	NA	NA	NA
AVV96596.1|542876_543713_+	5'-3' exonuclease	NA	A0A218MKA5	uncultured_virus	27.6	2.4e-05
AVV96597.1|543806_545057_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96598.1|545224_546091_+	DnaJ family protein	NA	M1PC06	Moumouvirus	55.1	1.9e-13
AVV96599.1|546100_546472_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AVV96600.1|546468_547644_+	recombinase RarA	NA	G3MBE0	Bacillus_virus	35.6	2.0e-58
>prophage 45
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	552325	553210	1680898		Clostridioides_phage(100.0%)	1	NA	NA
AVV96608.1|552325_553210_-	ATP-binding protein	NA	A0A1V0DZZ0	Clostridioides_phage	27.7	7.4e-05
>prophage 46
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	564631	570329	1680898		Staphylococcus_phage(50.0%)	4	NA	NA
AVV96620.1|564631_566620_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	37.4	6.8e-83
AVV96621.1|566726_567167_-	ribosome maturation factor	NA	NA	NA	NA	NA
AVV96622.1|567159_567495_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
AVV96623.1|567494_570329_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.8	1.6e-29
>prophage 47
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	577472	580573	1680898		Ostreococcus_lucimarinus_virus(50.0%)	4	NA	NA
AVV96630.1|577472_578285_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	34.5	2.9e-40
AVV96631.1|578285_579296_+	Holliday junction branch migration DNA helicase RuvB	NA	NA	NA	NA	NA
AVV96632.1|579363_579846_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
AVV96633.1|579838_580573_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	35.4	7.9e-29
>prophage 48
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	583814	590268	1680898		Bacillus_thuringiensis_phage(33.33%)	6	NA	NA
AVV96639.1|583814_584189_+	two-component system response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.6	3.5e-09
AVV96640.1|584189_585179_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
AVV96641.1|585187_587086_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	44.1	1.0e-99
AVV96642.1|587088_587343_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96643.1|587332_588046_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AVV96644.1|588042_590268_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.8	1.0e-87
>prophage 49
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	598152	602542	1680898		Aureococcus_anophage(50.0%)	3	NA	NA
AVV96653.1|598152_599808_-	ABC transporter permease	NA	A0A076FI99	Aureococcus_anophage	24.2	3.6e-29
AVV96654.1|599898_601338_-	outer membrane beta-barrel protein HofB	NA	NA	NA	NA	NA
AVV96655.1|601618_602542_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	30.3	2.5e-24
>prophage 50
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	608931	617128	1680898		Mycobacterium_phage(33.33%)	7	NA	NA
AVV96661.1|608931_611478_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	46.0	5.1e-83
AVV96662.1|611398_611635_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96663.1|611737_613018_+	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	25.8	1.6e-29
AVV96664.1|613072_613882_+	flagellar biosynthesis protein FlgG	NA	NA	NA	NA	NA
AVV96665.1|614307_614544_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96666.1|614546_615305_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96667.1|615319_617128_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	27.6	7.2e-23
>prophage 51
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	623458	626634	1680898		Moraxella_phage(100.0%)	2	NA	NA
AVV96673.1|623458_625075_+	CTP synthase (glutamine hydrolyzing)	NA	A0A0R6PHX8	Moraxella_phage	98.7	4.4e-173
AVV96674.1|625083_626634_+	single-stranded-DNA-specific exonuclease RecJ	NA	A0A0R6PDC6	Moraxella_phage	97.8	1.1e-149
>prophage 52
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	640582	641203	1680898		Bacillus_phage(100.0%)	1	NA	NA
AVV96693.1|640582_641203_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	32.9	8.8e-13
>prophage 53
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	651203	654842	1680898		Cyanophage(50.0%)	4	NA	NA
AVV96704.1|651203_652322_+	site-specific DNA-methyltransferase	NA	A0A127KMC1	Cyanophage	59.2	5.0e-83
AVV96705.1|652323_653016_+	restriction endonuclease	NA	NA	NA	NA	NA
AVV96706.1|653069_653951_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
AVV96707.1|653963_654842_-	carbon-nitrogen hydrolase family protein	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	29.6	1.4e-16
>prophage 54
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	659843	661510	1680898		Planktothrix_phage(100.0%)	2	NA	NA
AVV96714.1|659843_660650_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	6.5e-24
AVV96715.1|660646_661510_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.5	2.1e-20
>prophage 55
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	683675	691774	1680898	tRNA	Micromonas_pusilla_virus(33.33%)	6	NA	NA
AVV96729.1|683675_685328_-	cell division protein FstH	NA	M4QMW8	Micromonas_pusilla_virus	39.5	1.4e-60
AVV96730.1|685314_686571_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
AVV96731.1|686567_688139_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96732.1|688129_689161_-	3-dehydroquinate synthase	NA	A9YVT7	Ostreococcus_tauri_virus	30.6	1.0e-26
AVV96733.1|689165_690608_-	potassium transporter TrkA	NA	NA	NA	NA	NA
AVV96734.1|690658_691774_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	42.3	2.9e-75
>prophage 56
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	705410	716122	1680898	protease	Enterobacteria_phage(40.0%)	9	NA	NA
AVV96749.1|705410_707981_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.8	3.7e-113
AVV96750.1|708053_708812_-	site-specific DNA-methyltransferase	NA	A0A0N9PB81	Sulfolobus_monocaudavirus	52.2	3.8e-66
AVV97631.1|709858_710305_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97630.1|710297_711470_+	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	26.6	6.1e-23
AVV96751.1|711488_712751_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	34.6	2.7e-40
AVV96752.1|712763_713810_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AVV96753.1|713809_714469_-	flagellar protein	NA	NA	NA	NA	NA
AVV96754.1|714461_714890_-	flagellar FliJ family protein	NA	NA	NA	NA	NA
AVV96755.1|714886_716122_-	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	32.7	2.1e-58
>prophage 57
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	722646	728547	1680898		Moumouvirus(33.33%)	6	NA	NA
AVV96759.1|722646_723735_-	hypothetical protein	NA	M1PGF9	Moumouvirus	23.3	4.1e-05
AVV96760.1|723755_725234_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	37.2	4.6e-68
AVV96761.1|725422_726451_+	flagellar biosynthesis protein FlgI	NA	NA	NA	NA	NA
AVV96762.1|726447_726765_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96763.1|726761_727907_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
AVV96764.1|728112_728547_+	DNA starvation/stationary phase protection protein	NA	A0A2K9VDB4	Lactobacillus_phage	30.0	1.8e-09
>prophage 58
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	736969	738142	1680898		Ralstonia_phage(100.0%)	1	NA	NA
AVV96774.1|736969_738142_-	glutathionylspermidine synthase	NA	B2ZXR7	Ralstonia_phage	31.2	5.0e-33
>prophage 59
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	742347	746712	1680898		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
AVV97633.1|742347_743520_-	sulfate permease	NA	A0A2H4J153	uncultured_Caudovirales_phage	43.5	7.6e-74
AVV96779.1|743768_745844_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96780.1|745983_746712_-	hypothetical protein	NA	A0A0R6PEZ3	Moraxella_phage	91.5	4.8e-103
>prophage 60
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	749995	753954	1680898		Cercopithecine_herpesvirus(50.0%)	4	NA	NA
AVV96784.1|749995_750697_-	uracil-DNA glycosylase	NA	A0A2D0TCL0	Cercopithecine_herpesvirus	39.6	2.1e-31
AVV96785.1|750693_751410_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AVV96786.1|751396_752512_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96787.1|752574_753954_-	peptidase S41	NA	A0A0R6PIZ1	Moraxella_phage	25.8	9.4e-23
>prophage 61
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	759491	760295	1680898		Tupanvirus(100.0%)	1	NA	NA
AVV96791.1|759491_760295_-	phosphatidylserine decarboxylase	NA	A0A2K9L169	Tupanvirus	25.2	3.2e-07
>prophage 62
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	763517	770737	1680898		Marinomonas_phage(33.33%)	5	NA	NA
AVV96795.1|763517_764984_-	replicative DNA helicase	NA	I6S783	Marinomonas_phage	35.5	1.4e-61
AVV96796.1|764994_766395_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AVV96797.1|766397_767600_-	sensor histidine kinase	NA	NA	NA	NA	NA
AVV96798.1|767565_768207_-	DNA-binding response regulator	NA	A0A1V0SKI5	Klosneuvirus	27.5	1.7e-06
AVV96799.1|768277_770737_+	site-specific DNA-methyltransferase	NA	A0A2R3ZYF2	Campylobacter_phage	35.3	2.6e-44
>prophage 63
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	775546	782356	1680898	protease	Bacillus_virus(50.0%)	7	NA	NA
AVV96803.1|775546_776893_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	48.1	2.4e-108
AVV96804.1|776894_777707_-	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AVV96805.1|777709_778189_-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	NA	NA	NA	NA	NA
AVV96806.1|778206_778410_+	flavoprotein oxidoreductase	NA	NA	NA	NA	NA
AVV97635.1|778370_778760_-	flagellar biosynthesis protein FliW	NA	NA	NA	NA	NA
AVV96807.1|779174_779837_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AVV96808.1|779878_782356_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	38.1	4.1e-138
>prophage 64
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	798819	799266	1680898		Pneumococcus_phage(100.0%)	1	NA	NA
AVV96818.1|798819_799266_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.5	1.5e-38
>prophage 65
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	806705	809468	1680898	tRNA	Bodo_saltans_virus(100.0%)	1	NA	NA
AVV96828.1|806705_809468_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	27.1	4.9e-71
>prophage 66
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	812908	813898	1680898		Tetraselmis_virus(100.0%)	1	NA	NA
AVV96833.1|812908_813898_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.5	3.5e-32
>prophage 67
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	819537	821300	1680898		Prochlorococcus_phage(50.0%)	2	NA	NA
AVV96838.1|819537_820419_-	formyltetrahydrofolate deformylase	NA	E3SNR5	Prochlorococcus_phage	39.6	8.4e-17
AVV96839.1|820421_821300_-	signal peptide peptidase SppA	NA	B8QTU8	Erwinia_phage	33.7	1.4e-19
>prophage 68
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	827493	831348	1680898		Staphylococcus_phage(66.67%)	9	NA	NA
AVV96845.1|827493_827985_+	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	38.5	7.4e-15
AVV96846.1|828002_828233_+	carbon storage regulator	NA	NA	NA	NA	NA
AVV96847.1|828229_829054_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
AVV96848.1|829031_829490_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	38.1	2.2e-21
AVV96849.1|829492_829945_+	TonB-system energizer ExbB	NA	NA	NA	NA	NA
AVV96850.1|829955_830357_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AVV96851.1|830428_830563_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
AVV96852.1|830522_831008_+	ribonuclease P protein component	NA	NA	NA	NA	NA
AVV96853.1|830994_831348_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	36.6	5.3e-07
>prophage 69
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	838964	841406	1680898		Campylobacter_virus(50.0%)	2	NA	NA
AVV96859.1|838964_839591_-	thymidylate synthase (FAD)	NA	I7JC35	Campylobacter_virus	48.0	1.1e-39
AVV96860.1|839612_841406_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HRE7	Paramecium_bursaria_Chlorella_virus	36.1	1.2e-91
>prophage 70
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	845598	859412	1680898		Cafeteria_roenbergensis_virus(20.0%)	9	NA	NA
AVV96865.1|845598_846351_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	47.5	1.6e-61
AVV96866.1|846347_846983_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96867.1|846986_847334_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96868.1|847415_849287_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
AVV96869.1|849330_850701_+	restriction endonuclease	NA	Q1MVP0	Enterobacteria_phage	34.0	3.5e-54
AVV96870.1|850678_851293_+	restriction endonuclease	NA	NA	NA	NA	NA
AVV96871.1|851295_854205_+	DEAD/DEAH box helicase	NA	Q71TG1	Escherichia_phage	27.9	1.6e-72
AVV96872.1|854407_858169_+	class I SAM-dependent DNA methyltransferase	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	27.1	1.6e-08
AVV96873.1|858974_859412_+	hypothetical protein	NA	A0A2R3ZY92	Campylobacter_phage	35.6	2.1e-13
>prophage 71
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	871142	875251	1680898		Indivirus(50.0%)	3	NA	NA
AVV96883.1|871142_872177_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	NA	A0A1V0SE20	Indivirus	27.9	1.3e-16
AVV96884.1|872158_872875_+	methyltransferase	NA	NA	NA	NA	NA
AVV96885.1|872884_875251_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.9	7.7e-41
>prophage 72
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	878715	880613	1680898		Lactococcus_phage(50.0%)	2	NA	NA
AVV96888.1|878715_879615_-	DNA adenine methylase	NA	E0YIY3	Lactococcus_phage	34.1	3.0e-38
AVV96889.1|879611_880613_-	adenine methyltransferase	NA	M1HGA9	Paramecium_bursaria_Chlorella_virus	26.2	3.0e-18
>prophage 73
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	886286	887888	1680898		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
AVV96897.1|886286_887888_+	inorganic phosphate transporter	NA	M4QMY4	Ostreococcus_lucimarinus_virus	31.4	7.0e-38
>prophage 74
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	894099	911637	1680898	tRNA	uncultured_Mediterranean_phage(25.0%)	16	NA	NA
AVV96903.1|894099_894672_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.9	1.9e-17
AVV96904.1|894682_895129_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA	NA
AVV96905.1|895155_895887_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
AVV96906.1|895896_896157_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
AVV96907.1|896160_896958_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AVV96908.1|896958_898206_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.0	4.6e-77
AVV96909.1|898215_900750_+	anaphase-promoting protein	NA	NA	NA	NA	NA
AVV96910.1|900746_902795_+	DNA helicase II	NA	A7KV33	Bacillus_phage	34.6	4.1e-91
AVV96911.1|902791_903448_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AVV96912.1|903457_904021_+	aromatic acid decarboxylase	NA	NA	NA	NA	NA
AVV96913.1|904020_904494_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	45.5	3.3e-28
AVV96914.1|904495_905071_+	dTMP kinase	NA	Q2XUX0	environmental_halophage	37.2	2.2e-10
AVV96915.1|905058_905634_+	amidophosphoribosyltransferase	NA	NA	NA	NA	NA
AVV97638.1|905666_907706_+	SAM-dependent methyltransferase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	57.7	2.6e-210
AVV96916.1|907702_908896_+	restriction endonuclease	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	30.0	5.8e-05
AVV96917.1|908961_911637_+	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	37.3	8.3e-60
>prophage 75
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	915534	916320	1680898		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
AVV96922.1|915534_916320_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.3	1.4e-18
>prophage 76
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	919786	924561	1680898		Saccharomonospora_phage(50.0%)	3	NA	NA
AVV96926.1|919786_923422_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	34.6	2.1e-191
AVV96927.1|923403_924192_+	pseudouridine synthase	NA	NA	NA	NA	NA
AVV96928.1|924246_924561_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	31.6	1.0e-09
>prophage 77
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	932442	982857	1680898	protease,integrase,transposase	Helicobacter_phage(25.0%)	39	927843:927895	975963:976015
927843:927895	attL	ATCCAAACCGCTTAAAATGTTAGCGATAGCGATTTGTTCGTTTAGGGGGGGTA	NA	NA	NA	NA
AVV96935.1|932442_933510_+|integrase	integrase	integrase	S5W9T9	Leptospira_phage	26.7	1.3e-08
AVV96936.1|933826_934630_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96937.1|934601_934853_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96938.1|934984_935665_-|protease	CAAX protease	protease	NA	NA	NA	NA
AVV96939.1|936919_937549_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96940.1|937565_939614_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96941.1|939613_940666_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97640.1|940824_941019_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96942.1|941468_942137_+	chromosome partitioning protein ParA	NA	A0A222YXS3	Escherichia_phage	34.0	4.1e-24
AVV96943.1|942183_942561_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96944.1|942538_943204_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96945.1|943276_944068_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
AVV96946.1|944037_944523_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97641.1|946636_946957_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96947.1|947088_947340_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96948.1|947336_947546_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96949.1|947665_956179_-	helicase	NA	A0A248SL14	Klebsiella_phage	34.4	4.7e-242
AVV96950.1|956333_957371_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96951.1|959898_960327_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
AVV96952.1|960396_961680_+|transposase	transposase	transposase	A0A1S5REX3	Helicobacter_phage	86.2	5.5e-203
AVV96953.1|962759_962957_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96954.1|962865_963081_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97642.1|963107_963692_+	hypothetical protein	NA	NA	NA	NA	NA
AVV96955.1|963965_964247_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA	NA
AVV96956.1|964239_964554_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96957.1|964857_966771_+	relaxase	NA	NA	NA	NA	NA
AVV96958.1|966795_967980_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96959.1|968011_968296_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96960.1|968377_969034_-	chromosome partitioning protein ParA	NA	A2I303	Vibrio_virus	24.3	8.4e-06
AVV96961.1|973594_973831_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96962.1|973842_974106_-	competence protein ComB	NA	NA	NA	NA	NA
AVV96963.1|974117_974402_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96964.1|974398_974878_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96965.1|974870_975086_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96966.1|975088_975913_-|integrase	integrase	integrase	NA	NA	NA	NA
AVV96967.1|975854_976496_-	hypothetical protein	NA	NA	NA	NA	NA
975963:976015	attR	ATCCAAACCGCTTAAAATGTTAGCGATAGCGATTTGTTCGTTTAGGGGGGGTA	NA	NA	NA	NA
AVV96968.1|976483_977260_-|protease	CAAX protease	protease	NA	NA	NA	NA
AVV96969.1|977346_979812_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	36.6	3.6e-73
AVV96970.1|979878_982857_+	restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	25.4	3.1e-55
>prophage 78
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	996803	999241	1680898		Clostridium_phage(50.0%)	3	NA	NA
AVV96979.1|996803_997667_-	DNA polymerase III subunit epsilon	NA	A0A0A7RWA3	Clostridium_phage	31.8	1.3e-14
AVV96980.1|997644_998298_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AVV96981.1|998368_999241_+	class 1 fructose-bisphosphatase	NA	A0A1V0SEY8	Hokovirus	29.8	1.4e-19
>prophage 79
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1005674	1019199	1680898	tRNA	Listeria_phage(33.33%)	11	NA	NA
AVV96988.1|1005674_1006610_-	peptidase	NA	A8ATH6	Listeria_phage	46.9	6.8e-17
AVV96989.1|1006618_1007545_-	M23 family peptidase	NA	A8ATH6	Listeria_phage	37.1	1.1e-08
AVV96990.1|1007544_1008729_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AVV96991.1|1008718_1009231_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96992.1|1009227_1011648_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.2	1.7e-152
AVV96993.1|1011658_1011997_-	hypothetical protein	NA	NA	NA	NA	NA
AVV96994.1|1012006_1012978_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	39.5	4.1e-41
AVV96995.1|1012986_1014564_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AVV96996.1|1014560_1014944_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
AVV96997.1|1014991_1016308_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	41.9	2.4e-68
AVV96998.1|1016331_1019199_-	recombinase RecB	NA	G3MA40	Bacillus_virus	21.7	8.8e-07
>prophage 80
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1033767	1039144	1680898		Dickeya_phage(20.0%)	7	NA	NA
AVV97013.1|1033767_1034262_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	A0A140XBD6	Dickeya_phage	38.2	9.4e-18
AVV97014.1|1034258_1035203_-	septal ring lytic transglycosylase RlpA family lipoprotein	NA	F5B3X9	Synechococcus_phage	54.8	8.1e-18
AVV97015.1|1035202_1036312_-	lytic transglycosylase	NA	A0A1Y0SVL4	Pasteurella_phage	28.1	2.3e-08
AVV97016.1|1036405_1037170_-	hydrolase TatD	NA	NA	NA	NA	NA
AVV97017.1|1037245_1037866_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	36.5	1.8e-26
AVV97018.1|1037866_1038139_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AVV97019.1|1038160_1039144_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	9.6e-30
>prophage 81
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1043938	1044961	1680898	tRNA	Moraxella_phage(100.0%)	1	NA	NA
AVV97026.1|1043938_1044961_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	34.2	5.6e-41
>prophage 82
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1050372	1051683	1680898		Staphylococcus_phage(50.0%)	2	NA	NA
AVV97031.1|1050372_1050843_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	40.4	2.4e-26
AVV97032.1|1050852_1051683_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	38.9	6.0e-41
>prophage 83
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1057428	1061407	1680898		uncultured_virus(66.67%)	3	NA	NA
AVV97037.1|1057428_1059069_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.5	1.4e-166
AVV97038.1|1059093_1059450_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	47.2	2.3e-13
AVV97039.1|1059727_1061407_+	DNA primase	NA	A0A1S5RH32	Helicobacter_phage	34.6	4.4e-59
>prophage 84
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1077265	1078543	1680898		Phage_21(100.0%)	1	NA	NA
AVV97054.1|1077265_1078543_+	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	70.4	4.8e-13
>prophage 85
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1082315	1084541	1680898		Agrobacterium_phage(100.0%)	1	NA	NA
AVV97060.1|1082315_1084541_+	AAA family ATPase	NA	A0A223W0B1	Agrobacterium_phage	37.7	3.4e-123
>prophage 86
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1090289	1092889	1680898		Hokovirus(50.0%)	2	NA	NA
AVV97069.1|1090289_1091702_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.4	3.1e-45
AVV97070.1|1091743_1092889_+	GDP-mannose 4,6-dehydratase	NA	A0A0E3F1J3	Synechococcus_phage	57.7	3.1e-112
>prophage 87
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1097991	1103412	1680898		Acanthocystis_turfacea_Chlorella_virus(25.0%)	5	NA	NA
AVV97075.1|1097991_1098984_-	agmatine deiminase	NA	M1I5R4	Acanthocystis_turfacea_Chlorella_virus	31.7	1.5e-43
AVV97076.1|1099035_1099734_-	site-specific DNA-methyltransferase	NA	A0A1W6JJW1	Lactococcus_phage	52.0	2.1e-63
AVV97077.1|1099711_1100800_-	DNA (cytosine-5-)-methyltransferase	NA	M1PSQ0	Streptococcus_phage	44.9	1.3e-83
AVV97078.1|1100796_1102023_-	restriction endonuclease	NA	NA	NA	NA	NA
AVV97646.1|1102380_1103412_-	site-specific DNA-methyltransferase	NA	A0A0H3UZ66	Geobacillus_virus	28.7	4.5e-22
>prophage 88
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1133266	1135288	1680898		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
AVV97104.1|1133266_1135288_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	43.9	2.8e-15
>prophage 89
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1139588	1141628	1680898		Vibrio_phage(100.0%)	1	NA	NA
AVV97110.1|1139588_1141628_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	37.5	8.9e-38
>prophage 90
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1144885	1148276	1680898		Lactococcus_phage(33.33%)	5	NA	NA
AVV97114.1|1144885_1145707_+	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	31.9	5.9e-25
AVV97115.1|1145729_1146170_-	alpha-1,2-fucosyltransferase	NA	A0A0K0KVL4	Prochlorococcus_phage	34.4	6.4e-10
AVV97116.1|1146207_1146630_-	alpha-1,2-fucosyltransferase	NA	NA	NA	NA	NA
AVV97117.1|1146728_1147259_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97118.1|1147331_1148276_+	D-2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	32.0	7.1e-22
>prophage 91
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1155961	1165143	1680898		uncultured_Caudovirales_phage(25.0%)	7	NA	NA
AVV97125.1|1155961_1157659_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.9	3.0e-15
AVV97126.1|1157864_1159610_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
AVV97647.1|1159761_1160214_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
AVV97127.1|1160262_1161405_-	cystathionine gamma-synthase	NA	A0A2I2L687	Orpheovirus	26.7	8.0e-12
AVV97128.1|1161425_1162346_-	cysteine synthase	NA	C3U2M1	Lactococcus_phage	43.1	1.9e-64
AVV97129.1|1162457_1163036_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97130.1|1163280_1165143_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.7	2.4e-146
>prophage 92
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1171399	1173610	1680898		Catovirus(100.0%)	1	NA	NA
AVV97137.1|1171399_1173610_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	33.9	2.3e-92
>prophage 93
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1177416	1182662	1680898	tRNA	Hokovirus(33.33%)	4	NA	NA
AVV97140.1|1177416_1179855_-	pyruvate, water dikinase	NA	A0A1V0SGR7	Hokovirus	36.7	4.8e-171
AVV97141.1|1180042_1180174_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97142.1|1180215_1182054_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.2	3.4e-113
AVV97143.1|1182050_1182662_+	translation initiation factor IF-3	NA	K4F6Y6	Cronobacter_phage	33.9	1.5e-09
>prophage 94
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1207730	1210066	1680898		Bacillus_phage(50.0%)	2	NA	NA
AVV97171.1|1207730_1208774_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	59.0	4.3e-113
AVV97172.1|1208785_1210066_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	53.3	3.1e-121
>prophage 95
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1218447	1265086	1680898	protease,tRNA,transposase	Helicobacter_phage(26.67%)	47	NA	NA
AVV97182.1|1218447_1219125_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	31.8	2.6e-26
AVV97183.1|1219367_1219856_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97184.1|1219834_1220098_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97185.1|1220153_1221422_-|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	34.2	8.3e-42
AVV97186.1|1221424_1222138_-	chemotaxis protein	NA	NA	NA	NA	NA
AVV97187.1|1222212_1223304_-	peptide chain release factor 2	NA	NA	NA	NA	NA
AVV97188.1|1223364_1224540_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AVV97189.1|1224549_1225317_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
AVV97190.1|1225310_1226039_-	peptidase	NA	NA	NA	NA	NA
AVV97191.1|1226564_1227464_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AVV97192.1|1227477_1228401_+	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
AVV97193.1|1228422_1228986_+	elongation factor P	NA	NA	NA	NA	NA
AVV97194.1|1229476_1230721_+	DNA (cytosine-5-)-methyltransferase	NA	M1PSQ0	Streptococcus_phage	29.2	5.5e-30
AVV97195.1|1230707_1231478_+	hypothetical protein	NA	S0A2X1	Cellulophaga_phage	48.1	4.0e-55
AVV97196.1|1231452_1232799_+	AAA family ATPase	NA	M1NSM1	Streptococcus_phage	45.2	2.4e-84
AVV97197.1|1232791_1234006_+	LlaJI family restriction endonuclease	NA	Q6DMW8	Streptococcus_phage	36.4	3.2e-67
AVV97198.1|1234086_1235109_-	pseudaminic acid synthase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	34.1	9.0e-31
AVV97199.1|1235113_1235755_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.7	1.4e-16
AVV97200.1|1235754_1237029_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AVV97201.1|1237232_1237958_+	CvpA family protein	NA	NA	NA	NA	NA
AVV97202.1|1237967_1239473_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	40.9	4.6e-92
AVV97203.1|1239472_1240723_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	1.8e-105
AVV97204.1|1240733_1241276_+	DUF1882 domain-containing protein	NA	NA	NA	NA	NA
AVV97205.1|1241297_1242101_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97206.1|1244080_1244860_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97207.1|1244879_1245173_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97208.1|1245179_1246703_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97209.1|1246699_1247002_+	virB2 type IV secretion protein	NA	NA	NA	NA	NA
AVV97210.1|1247002_1247269_+	virB3 type IV secretion protein	NA	NA	NA	NA	NA
AVV97211.1|1247261_1249685_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97212.1|1249687_1251721_+	DNA topoisomerase I	NA	A0A2K9L5F8	Tupanvirus	31.8	4.7e-47
AVV97213.1|1251837_1253007_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97214.1|1253006_1254539_+	conjugal transfer protein	NA	NA	NA	NA	NA
AVV97215.1|1254538_1254907_+	DNA transformation compentancy	NA	NA	NA	NA	NA
AVV97216.1|1254903_1256187_-|transposase	transposase	transposase	A0A1S5REX3	Helicobacter_phage	86.4	1.9e-203
AVV97217.1|1256256_1256685_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
AVV97218.1|1257329_1257620_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97219.1|1257616_1258072_-	mobilization protein	NA	NA	NA	NA	NA
AVV97220.1|1258068_1259010_-	ATPase	NA	NA	NA	NA	NA
AVV97221.1|1259009_1259309_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97222.1|1259305_1259569_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97223.1|1259558_1259855_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97224.1|1260927_1261356_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5REW8	Helicobacter_phage	98.6	6.6e-76
AVV97225.1|1261425_1262709_+|transposase	transposase	transposase	A0A1S5REX3	Helicobacter_phage	85.9	2.7e-202
AVV97226.1|1262786_1263065_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97227.1|1263066_1264329_+	conjugal transfer protein TrbL	NA	NA	NA	NA	NA
AVV97228.1|1264402_1265086_+|protease	CAAX protease	protease	NA	NA	NA	NA
>prophage 96
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1275532	1277170	1680898		Staphylococcus_phage(50.0%)	2	NA	NA
AVV97238.1|1275532_1276690_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	56.8	6.9e-120
AVV97239.1|1276756_1277170_+	nucleoside-diphosphate kinase	NA	L7Y4C4	Megavirus	44.3	3.6e-23
>prophage 97
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1285264	1289931	1680898		Tetraselmis_virus(50.0%)	3	NA	NA
AVV97247.1|1285264_1286395_-	lipopolysaccharide biosynthesis protein	NA	A0A2P0VP84	Tetraselmis_virus	26.9	1.9e-05
AVV97650.1|1286596_1287949_+	outer membrane beta-barrel protein HofA	NA	NA	NA	NA	NA
AVV97248.1|1288065_1289931_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	34.2	3.4e-92
>prophage 98
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1300230	1302396	1680898		unidentified_phage(50.0%)	2	NA	NA
AVV97652.1|1300230_1301394_+	cysteine desulfurase IscS	NA	H7BUW1	unidentified_phage	42.3	1.6e-39
AVV97258.1|1301415_1302396_+	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A1B1IT19	uncultured_Mediterranean_phage	37.0	1.1e-14
>prophage 99
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1315150	1316260	1680898		Catovirus(100.0%)	1	NA	NA
AVV97271.1|1315150_1316260_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	31.0	5.7e-31
>prophage 100
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1344585	1347525	1680898		Acinetobacter_phage(100.0%)	3	NA	NA
AVV97311.1|1344585_1345944_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	2.1e-35
AVV97312.1|1345936_1346944_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	33.3	8.3e-45
AVV97313.1|1346940_1347525_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	35.6	5.3e-20
>prophage 101
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1357156	1358533	1680898		Bacillus_phage(100.0%)	1	NA	NA
AVV97323.1|1357156_1358533_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	29.4	1.1e-47
>prophage 102
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1375025	1375715	1680898		Vibrio_phage(100.0%)	1	NA	NA
AVV97339.1|1375025_1375715_-	NAD-dependent deacylase	NA	A0A126HHA0	Vibrio_phage	40.7	4.4e-29
>prophage 103
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1384086	1388169	1680898		Lactococcus_phage(50.0%)	4	NA	NA
AVV97350.1|1384086_1386021_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	28.3	2.3e-35
AVV97351.1|1386010_1387033_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
AVV97352.1|1387185_1387614_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
AVV97353.1|1387623_1388169_+	single-stranded DNA-binding protein	NA	D7RWG9	Brochothrix_phage	38.1	1.6e-13
>prophage 104
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1392534	1399017	1680898	tRNA	Tupanvirus(50.0%)	6	NA	NA
AVV97357.1|1392534_1395078_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	35.1	1.0e-70
AVV97358.1|1395079_1395652_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AVV97359.1|1395760_1396237_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97360.1|1396382_1396640_+	hypothetical protein	NA	NA	NA	NA	NA
AVV97361.1|1396719_1397724_-	formamidase	NA	NA	NA	NA	NA
AVV97362.1|1397889_1399017_-	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	31.5	5.1e-43
>prophage 105
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1412712	1414097	1680898		Flavobacterium_phage(50.0%)	2	NA	NA
AVV97377.1|1412712_1413417_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	41.5	6.9e-22
AVV97378.1|1413410_1414097_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.3e-17
>prophage 106
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1425050	1430456	1680898		Agrobacterium_phage(33.33%)	4	NA	NA
AVV97388.1|1425050_1426040_+	modification methylase	NA	A0A2L0UZL7	Agrobacterium_phage	48.6	9.9e-75
AVV97389.1|1426142_1426811_+	HAD family hydrolase	NA	NA	NA	NA	NA
AVV97390.1|1426819_1428556_-	multidrug transporter	NA	F2Y2R6	Organic_Lake_phycodnavirus	35.5	2.3e-26
AVV97391.1|1429256_1430456_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	26.4	6.2e-31
>prophage 107
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1434081	1445823	1680898		Vibrio_phage(50.0%)	4	NA	NA
AVV97400.1|1434081_1442754_+	DNA-directed RNA polymerase subunit beta/beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.0	3.6e-64
AVV97401.1|1442842_1443250_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
AVV97402.1|1443265_1443733_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
AVV97403.1|1443744_1445823_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.2	1.5e-61
>prophage 108
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1449081	1450410	1680898	tRNA	Tupanvirus(100.0%)	1	NA	NA
AVV97407.1|1449081_1450410_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	26.2	5.1e-34
>prophage 109
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1459659	1460421	1680898	tRNA	Escherichia_phage(100.0%)	1	NA	NA
AVV97415.1|1459659_1460421_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	33.7	6.1e-32
>prophage 110
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1468149	1469457	1680898		Moraxella_phage(100.0%)	1	NA	NA
AVV97422.1|1468149_1469457_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	31.1	1.3e-50
>prophage 111
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1472632	1473379	1680898		Bacillus_virus(100.0%)	1	NA	NA
AVV97425.1|1472632_1473379_-	glutamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.5	4.7e-29
>prophage 112
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1481897	1482869	1680898		Tupanvirus(100.0%)	1	NA	NA
AVV97431.1|1481897_1482869_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	A0A2K9L162	Tupanvirus	22.9	1.5e-06
>prophage 113
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1493744	1497730	1680898	tRNA	Catovirus(50.0%)	2	NA	NA
AVV97442.1|1493744_1496369_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	39.1	1.2e-143
AVV97443.1|1496383_1497730_+	signal recognition particle protein	NA	D6PHS7	uncultured_phage	27.9	8.6e-05
>prophage 114
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1509860	1511530	1680898		Enterococcus_phage(50.0%)	2	NA	NA
AVV97456.1|1509860_1510655_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	28.7	3.9e-13
AVV97457.1|1510657_1511530_+	chromosome partitioning protein ParB	NA	S5WII0	Leptospira_phage	35.7	3.8e-14
>prophage 115
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1523341	1524283	1680898		Klebsiella_phage(100.0%)	1	NA	NA
AVV97659.1|1523341_1524283_+	DNA (cytosine-5-)-methyltransferase	NA	A0A0K1LQ98	Klebsiella_phage	35.8	5.6e-43
>prophage 116
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1530013	1533953	1680898		Helicobacter_phage(100.0%)	2	NA	NA
AVV97479.1|1530013_1532893_+	hypothetical protein	NA	G9CU61	Helicobacter_phage	84.4	0.0e+00
AVV97480.1|1532894_1533953_+	hypothetical protein	NA	A0A1S5REZ8	Helicobacter_phage	79.8	8.9e-82
>prophage 117
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1543884	1550804	1680898		Rhizobium_phage(33.33%)	6	NA	NA
AVV97491.1|1543884_1545009_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	22.4	3.7e-09
AVV97492.1|1545021_1547343_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	36.9	5.6e-121
AVV97493.1|1547388_1548381_+	adenine methyltransferase	NA	NA	NA	NA	NA
AVV97494.1|1548367_1549039_+	restriction endonuclease	NA	NA	NA	NA	NA
AVV97495.1|1548986_1549169_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97496.1|1549592_1550804_+	endopeptidase	NA	A0A1J0MFP9	Staphylococcus_phage	35.6	3.7e-15
>prophage 118
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1592174	1593506	1680898		Erwinia_phage(100.0%)	1	NA	NA
AVV97536.1|1592174_1593506_+	HslU--HslV peptidase ATPase subunit	NA	A0A2H5BJT2	Erwinia_phage	26.7	1.2e-38
>prophage 119
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1608552	1609416	1680898		Streptococcus_phage(100.0%)	1	NA	NA
AVV97546.1|1608552_1609416_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	32.5	8.4e-30
>prophage 120
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1615191	1616402	1680898		Erythrobacter_phage(50.0%)	2	NA	NA
AVV97552.1|1615191_1615428_-	acyl carrier protein	NA	A0A1P8VVJ5	Erythrobacter_phage	44.9	7.2e-08
AVV97553.1|1615658_1616402_-	3-oxoacyl-ACP reductase FabG	NA	A0A0N9R355	Chrysochromulina_ericina_virus	24.4	1.7e-10
>prophage 121
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1623324	1629370	1680898	protease	Mycoplasma_phage(33.33%)	8	NA	NA
AVV97561.1|1623324_1624815_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.5	1.1e-42
AVV97562.1|1624862_1625441_-	DedA family protein	NA	NA	NA	NA	NA
AVV97563.1|1625455_1625995_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.4	1.1e-32
AVV97564.1|1626052_1626385_-	hypothetical protein	NA	NA	NA	NA	NA
AVV97565.1|1626436_1626892_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
AVV97566.1|1626912_1627611_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
AVV97567.1|1627619_1628492_-	signal peptidase I	NA	NA	NA	NA	NA
AVV97665.1|1628491_1629370_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	35.8	2.0e-34
>prophage 122
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1650896	1653343	1680898		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
AVV97588.1|1650896_1652018_-	8-amino-7-oxononanoate synthase	NA	V5LQ39	Emiliania_huxleyi_virus	29.6	2.6e-15
AVV97589.1|1652041_1653343_-	hemolysin	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.9	5.7e-14
>prophage 123
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1659870	1662957	1680898		Leptospira_phage(100.0%)	1	NA	NA
AVV97594.1|1659870_1662957_+	acriflavin resistance protein	NA	S5VTK5	Leptospira_phage	25.2	5.3e-74
>prophage 124
CP028325	Helicobacter pylori strain FDAARGOS_298 chromosome, complete genome	1680898	1675484	1680241	1680898	tRNA	Ralstonia_phage(50.0%)	3	NA	NA
AVV97599.1|1675484_1677455_-	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	33.6	9.1e-96
AVV97600.1|1677532_1678474_+	chemotaxis protein CheV	NA	NA	NA	NA	NA
AVV97601.1|1678507_1680241_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	22.6	2.6e-14
