assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003047225.1_ASM304722v1	CP024794	Bacillus sp. Y-01 chromosome, complete genome	2	992301-992396	2	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,cas14j,DEDDh	Orphan	TGTAACTATAATGGTTACAACGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,cas14j,DEDDh	NA,NA|60aa|down_4|CP024794.1_996073_996253_+	NA|299aa|up_9|CP024794.1_978598_979495_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|207aa|up_8|CP024794.1_980830_981451_+	pfam09335, VTT, VMP1, TMEM41, and TVP38 (VTT) domain	NA|299aa|up_7|CP024794.1_981966_982863_+	PRK12548, PRK12548, shikimate dehydrogenase	NA|435aa|up_6|CP024794.1_983504_984809_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|403aa|up_5|CP024794.1_984920_986129_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|319aa|up_4|CP024794.1_986128_987085_+	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|483aa|up_3|CP024794.1_987236_988685_+	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1	NA|292aa|up_2|CP024794.1_988776_989652_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|443aa|up_1|CP024794.1_990420_991749_+	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases	NA|66aa|up_0|CP024794.1_991796_991994_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|211aa|down_0|CP024794.1_992417_993050_+	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|329aa|down_1|CP024794.1_993222_994209_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|181aa|down_2|CP024794.1_994821_995364_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|148aa|down_3|CP024794.1_995481_995925_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|60aa|down_4|CP024794.1_996073_996253_+	NA	NA|204aa|down_5|CP024794.1_996451_997063_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|49aa|down_6|CP024794.1_997055_997202_+	pfam12841, YvrJ, YvrJ protein family	NA|76aa|down_7|CP024794.1_997206_997434_+	PRK14082, PRK14082, hypothetical protein; Provisional	NA|58aa|down_8|CP024794.1_999367_999541_-	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|105aa|down_9|CP024794.1_999614_999929_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
GCA_003047225.1_ASM304722v1	CP024794	Bacillus sp. Y-01 chromosome, complete genome	5	2862836-2862983	5	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,cas14j,DEDDh	Orphan	CTTTTGCCATTTTTGTCGTACTA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,csa3,WYL,cas14j,DEDDh	NA|187aa|up_8|CP024794.1_2853227_2853788_-,NA|71aa|up_6|CP024794.1_2854686_2854899_+,NA|488aa|up_0|CP024794.1_2861282_2862746_+,NA|341aa|down_0|CP024794.1_2863746_2864769_+,NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA|277aa|up_9|CP024794.1_2852197_2853028_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|187aa|up_8|CP024794.1_2853227_2853788_-	NA	NA|185aa|up_7|CP024794.1_2853985_2854540_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|71aa|up_6|CP024794.1_2854686_2854899_+	NA	NA|275aa|up_5|CP024794.1_2854908_2855733_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|220aa|up_4|CP024794.1_2856149_2856809_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional	NA|501aa|up_3|CP024794.1_2857060_2858563_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|275aa|up_2|CP024794.1_2858683_2859508_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|294aa|up_1|CP024794.1_2860075_2860957_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|488aa|up_0|CP024794.1_2861282_2862746_+	NA	NA|341aa|down_0|CP024794.1_2863746_2864769_+	NA	NA|199aa|down_1|CP024794.1_2865613_2866210_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|193aa|down_2|CP024794.1_2866212_2866791_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|334aa|down_3|CP024794.1_2866919_2867921_-	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|CP024794.1_2867993_2868413_-	cd18551, ABC_6TM_LmrA_like, Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar proteins	NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA	NA|96aa|down_6|CP024794.1_2869581_2869869_-	pfam13799, DUF4183, Domain of unknown function (DUF4183)	NA|411aa|down_7|CP024794.1_2870100_2871333_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|265aa|down_8|CP024794.1_2871476_2872271_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_9|CP024794.1_2872322_2873099_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003047225.1_ASM304722v1	CP024794	Bacillus sp. Y-01 chromosome, complete genome	6	2863053-2863138	6	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,cas14j,DEDDh	Orphan	CTTTTGCCATTTTTGTCGTACTA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,cas14j,DEDDh	NA|187aa|up_8|CP024794.1_2853227_2853788_-,NA|71aa|up_6|CP024794.1_2854686_2854899_+,NA|488aa|up_0|CP024794.1_2861282_2862746_+,NA|341aa|down_0|CP024794.1_2863746_2864769_+,NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA|277aa|up_9|CP024794.1_2852197_2853028_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|187aa|up_8|CP024794.1_2853227_2853788_-	NA	NA|185aa|up_7|CP024794.1_2853985_2854540_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|71aa|up_6|CP024794.1_2854686_2854899_+	NA	NA|275aa|up_5|CP024794.1_2854908_2855733_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|220aa|up_4|CP024794.1_2856149_2856809_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional	NA|501aa|up_3|CP024794.1_2857060_2858563_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|275aa|up_2|CP024794.1_2858683_2859508_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|294aa|up_1|CP024794.1_2860075_2860957_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|488aa|up_0|CP024794.1_2861282_2862746_+	NA	NA|341aa|down_0|CP024794.1_2863746_2864769_+	NA	NA|199aa|down_1|CP024794.1_2865613_2866210_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|193aa|down_2|CP024794.1_2866212_2866791_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|334aa|down_3|CP024794.1_2866919_2867921_-	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|CP024794.1_2867993_2868413_-	cd18551, ABC_6TM_LmrA_like, Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar proteins	NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA	NA|96aa|down_6|CP024794.1_2869581_2869869_-	pfam13799, DUF4183, Domain of unknown function (DUF4183)	NA|411aa|down_7|CP024794.1_2870100_2871333_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|265aa|down_8|CP024794.1_2871476_2872271_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_9|CP024794.1_2872322_2873099_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003047225.1_ASM304722v1	CP024794	Bacillus sp. Y-01 chromosome, complete genome	7	2863208-2863293	7	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,cas14j,DEDDh	Orphan	CTTTTGCCATTTTTGTCGTACTA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,cas14j,DEDDh	NA|187aa|up_8|CP024794.1_2853227_2853788_-,NA|71aa|up_6|CP024794.1_2854686_2854899_+,NA|488aa|up_0|CP024794.1_2861282_2862746_+,NA|341aa|down_0|CP024794.1_2863746_2864769_+,NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA|277aa|up_9|CP024794.1_2852197_2853028_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|187aa|up_8|CP024794.1_2853227_2853788_-	NA	NA|185aa|up_7|CP024794.1_2853985_2854540_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|71aa|up_6|CP024794.1_2854686_2854899_+	NA	NA|275aa|up_5|CP024794.1_2854908_2855733_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|220aa|up_4|CP024794.1_2856149_2856809_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional	NA|501aa|up_3|CP024794.1_2857060_2858563_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|275aa|up_2|CP024794.1_2858683_2859508_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|294aa|up_1|CP024794.1_2860075_2860957_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|488aa|up_0|CP024794.1_2861282_2862746_+	NA	NA|341aa|down_0|CP024794.1_2863746_2864769_+	NA	NA|199aa|down_1|CP024794.1_2865613_2866210_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|193aa|down_2|CP024794.1_2866212_2866791_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|334aa|down_3|CP024794.1_2866919_2867921_-	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|CP024794.1_2867993_2868413_-	cd18551, ABC_6TM_LmrA_like, Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar proteins	NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA	NA|96aa|down_6|CP024794.1_2869581_2869869_-	pfam13799, DUF4183, Domain of unknown function (DUF4183)	NA|411aa|down_7|CP024794.1_2870100_2871333_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|265aa|down_8|CP024794.1_2871476_2872271_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_9|CP024794.1_2872322_2873099_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003047225.1_ASM304722v1	CP024794	Bacillus sp. Y-01 chromosome, complete genome	8	2863396-2863480	8	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,cas14j,DEDDh	Orphan	CTTTTGCCATTTTTGTCGTACTA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,cas14j,DEDDh	NA|187aa|up_8|CP024794.1_2853227_2853788_-,NA|71aa|up_6|CP024794.1_2854686_2854899_+,NA|488aa|up_0|CP024794.1_2861282_2862746_+,NA|341aa|down_0|CP024794.1_2863746_2864769_+,NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA|277aa|up_9|CP024794.1_2852197_2853028_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|187aa|up_8|CP024794.1_2853227_2853788_-	NA	NA|185aa|up_7|CP024794.1_2853985_2854540_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|71aa|up_6|CP024794.1_2854686_2854899_+	NA	NA|275aa|up_5|CP024794.1_2854908_2855733_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|220aa|up_4|CP024794.1_2856149_2856809_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional	NA|501aa|up_3|CP024794.1_2857060_2858563_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|275aa|up_2|CP024794.1_2858683_2859508_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|294aa|up_1|CP024794.1_2860075_2860957_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|488aa|up_0|CP024794.1_2861282_2862746_+	NA	NA|341aa|down_0|CP024794.1_2863746_2864769_+	NA	NA|199aa|down_1|CP024794.1_2865613_2866210_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|193aa|down_2|CP024794.1_2866212_2866791_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|334aa|down_3|CP024794.1_2866919_2867921_-	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|CP024794.1_2867993_2868413_-	cd18551, ABC_6TM_LmrA_like, Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar proteins	NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA	NA|96aa|down_6|CP024794.1_2869581_2869869_-	pfam13799, DUF4183, Domain of unknown function (DUF4183)	NA|411aa|down_7|CP024794.1_2870100_2871333_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|265aa|down_8|CP024794.1_2871476_2872271_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_9|CP024794.1_2872322_2873099_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_003047225.1_ASM304722v1	CP024794	Bacillus sp. Y-01 chromosome, complete genome	9	2863546-2863637	9	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,cas14j,DEDDh	Orphan	CTTTTGCCATTTTTGTCGTACTA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,WYL,cas14j,DEDDh	NA|187aa|up_8|CP024794.1_2853227_2853788_-,NA|71aa|up_6|CP024794.1_2854686_2854899_+,NA|488aa|up_0|CP024794.1_2861282_2862746_+,NA|341aa|down_0|CP024794.1_2863746_2864769_+,NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA|277aa|up_9|CP024794.1_2852197_2853028_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|187aa|up_8|CP024794.1_2853227_2853788_-	NA	NA|185aa|up_7|CP024794.1_2853985_2854540_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|71aa|up_6|CP024794.1_2854686_2854899_+	NA	NA|275aa|up_5|CP024794.1_2854908_2855733_-	smart00318, SNc, Staphylococcal nuclease homologues	NA|220aa|up_4|CP024794.1_2856149_2856809_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional	NA|501aa|up_3|CP024794.1_2857060_2858563_-	pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo)	NA|275aa|up_2|CP024794.1_2858683_2859508_-	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|294aa|up_1|CP024794.1_2860075_2860957_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|488aa|up_0|CP024794.1_2861282_2862746_+	NA	NA|341aa|down_0|CP024794.1_2863746_2864769_+	NA	NA|199aa|down_1|CP024794.1_2865613_2866210_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|193aa|down_2|CP024794.1_2866212_2866791_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|334aa|down_3|CP024794.1_2866919_2867921_-	COG4278, COG4278, Uncharacterized conserved protein [Function unknown]	NA|140aa|down_4|CP024794.1_2867993_2868413_-	cd18551, ABC_6TM_LmrA_like, Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar proteins	NA|164aa|down_5|CP024794.1_2868818_2869310_+	NA	NA|96aa|down_6|CP024794.1_2869581_2869869_-	pfam13799, DUF4183, Domain of unknown function (DUF4183)	NA|411aa|down_7|CP024794.1_2870100_2871333_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|265aa|down_8|CP024794.1_2871476_2872271_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|down_9|CP024794.1_2872322_2873099_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
