The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028491	Carboxydocella thermautotrophica strain 019 chromosome, complete genome	2678168	143695	156572	2678168		Synechococcus_phage(22.22%)	9	NA	NA
AVX19355.1|143695_147469_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.0	4.7e-32
AVX19356.1|147889_149260_+	putative MFS transporter, AGZA family, xanthine/uracil permease	NA	A0A0R6PHV4	Moraxella_phage	33.9	8.3e-56
AVX19357.1|149286_149811_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	1.3e-25
AVX19358.1|149927_151220_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.4	2.3e-23
AVX19359.1|151245_151953_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A0E3HI61	Synechococcus_phage	42.8	1.9e-40
AVX19360.1|151971_153381_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	37.0	3.8e-64
AVX19361.1|153377_154406_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.6	1.4e-68
AVX19362.1|154407_155034_+	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	42.5	1.4e-29
AVX19363.1|155033_156572_+	IMP cyclohydrolase /phosphoribosylaminoimidazolecarboxamideformyltransferase	NA	Q58MG4	Prochlorococcus_phage	53.7	1.7e-81
>prophage 2
CP028491	Carboxydocella thermautotrophica strain 019 chromosome, complete genome	2678168	328708	336503	2678168		Pseudomonas_phage(16.67%)	10	NA	NA
AVX19532.1|328708_329776_+	bacterial peptide chain release factor 1 (bRF-1)	NA	W8EDB3	Pseudomonas_phage	45.2	7.8e-09
AVX19533.1|329787_330657_+	[protein release factor]-glutamine N5-methyltransferase	NA	NA	NA	NA	NA
AVX19534.1|330661_331690_+	translation factor SUA5	NA	A0A291ATS8	Pandoravirus	43.1	5.3e-55
AVX19535.1|331691_332144_+	protein-tyrosine phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	32.8	5.8e-06
AVX19536.1|332168_332618_+	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
AVX19537.1|332643_333891_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.8	6.6e-100
AVX19538.1|333912_334542_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AVX19539.1|334554_335013_+	dCMP deaminase	NA	A0A1D8ESY8	Mycobacterium_phage	48.0	4.8e-24
AVX19540.1|335009_335339_+	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA	NA	NA	NA	NA
AVX19541.1|335399_336503_+	UDP-N-Acetylglucosamine 2-epimerase	NA	A0A1V0SAG5	Catovirus	29.3	7.5e-23
>prophage 3
CP028491	Carboxydocella thermautotrophica strain 019 chromosome, complete genome	2678168	1123076	1134204	2678168		Staphylococcus_phage(42.86%)	10	NA	NA
AVX20324.1|1123076_1124951_+	serine/threonine protein kinase	NA	W5S4J6	Pithovirus	33.2	1.7e-19
AVX20325.1|1124961_1125828_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AVX20326.1|1125830_1126484_+	ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA	NA
AVX20327.1|1126485_1127511_+	Acetoin utilization deacetylase AcuC	NA	A0A2K9L473	Tupanvirus	38.1	1.2e-38
AVX20328.1|1127768_1128932_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase	NA	A0A1V0SE20	Indivirus	34.8	1.0e-46
AVX20329.1|1128934_1129591_+	riboflavin synthase alpha chain	NA	A0A2H4PQS5	Staphylococcus_phage	41.7	5.4e-37
AVX20330.1|1129603_1130815_+	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.9	1.0e-105
AVX20331.1|1130839_1131313_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	59.3	5.8e-41
AVX20332.1|1131458_1132958_+	hypothetical protein	NA	NA	NA	NA	NA
AVX20333.1|1133031_1134204_+	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6)	NA	B6DZZ7	Stx2-converting_phage	31.9	5.0e-33
>prophage 4
CP028491	Carboxydocella thermautotrophica strain 019 chromosome, complete genome	2678168	1335422	1344367	2678168	protease	Halovirus(14.29%)	10	NA	NA
AVX20542.1|1335422_1336157_+	Organic radical activating enzyme	NA	R4TAH8	Halovirus	30.4	6.3e-10
AVX20543.1|1336170_1336731_+	GTP cyclohydrolase I	NA	E7DN69	Pneumococcus_phage	57.1	1.4e-49
AVX20544.1|1336752_1336932_+	Protein of unknown function (DUF4264)	NA	NA	NA	NA	NA
AVX20545.1|1336946_1338224_+	putative tyrosine transporter P-protein	NA	NA	NA	NA	NA
AVX20546.1|1338235_1339003_+	5'-nucleotidase /3'-nucleotidase /exopolyphosphatase	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	40.4	6.7e-47
AVX20547.1|1339114_1339576_+	hypothetical protein	NA	NA	NA	NA	NA
AVX20548.1|1339599_1341081_+|protease	ATP-dependent metalloprotease FtsH	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	41.5	1.7e-75
AVX20549.1|1341152_1341659_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	41.5	1.1e-21
AVX20550.1|1341662_1343267_+	ATP-dependent RNA helicase DeaD	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	39.8	1.7e-68
AVX20551.1|1343341_1344367_+	recombination protein RecA	NA	A0A0S2MVG1	Bacillus_phage	66.9	1.0e-122
>prophage 5
CP028491	Carboxydocella thermautotrophica strain 019 chromosome, complete genome	2678168	1778461	1785432	2678168		Tupanvirus(33.33%)	10	NA	NA
AVX20966.1|1778461_1778812_-	Cupin domain-containing protein	NA	A0A2K9L322	Tupanvirus	27.5	1.3e-05
AVX20967.1|1778964_1779762_+	DNA end-binding protein Ku	NA	A0A249XRB2	Mycobacterium_phage	40.9	2.4e-47
AVX20968.1|1779761_1780631_+	bifunctional non-homologous end joining protein LigD	NA	A0A291AUP8	Sinorhizobium_phage	29.8	9.4e-21
AVX20969.1|1780627_1781485_+	bifunctional non-homologous end joining protein LigD	NA	NA	NA	NA	NA
AVX20970.1|1781553_1781841_+	transcriptional regulator, ArsR family	NA	A0A218MNF3	uncultured_virus	41.2	3.1e-05
AVX20971.1|1781821_1782475_+	putative membrane protein	NA	NA	NA	NA	NA
AVX20972.1|1782452_1782755_-	hypothetical protein	NA	NA	NA	NA	NA
AVX20973.1|1782873_1783296_+	hypothetical protein	NA	NA	NA	NA	NA
AVX20974.1|1783334_1784252_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	62.7	1.2e-103
AVX20975.1|1784370_1785432_-	PAS domain S-box-containing protein	NA	A0A2K9L0Z8	Tupanvirus	23.5	7.0e-10
>prophage 6
CP028491	Carboxydocella thermautotrophica strain 019 chromosome, complete genome	2678168	2370679	2438221	2678168	capsid,portal,tail,terminase,tRNA	Streptococcus_phage(13.33%)	96	NA	NA
AVX21552.1|2370679_2371465_-|tRNA	tRNA(Ile)-lysidine synthase TilS/MesJ	tRNA	NA	NA	NA	NA
AVX21553.1|2371489_2371822_-	bacillithiol system protein YtxJ	NA	NA	NA	NA	NA
AVX21554.1|2371800_2372259_-	Nucleoside recognition	NA	NA	NA	NA	NA
AVX21555.1|2372269_2372689_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21556.1|2372704_2372986_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21557.1|2373051_2374221_-	LL-diaminopimelate aminotransferase apoenzyme	NA	NA	NA	NA	NA
AVX21558.1|2374271_2376425_-	Cd2+/Zn2+-exporting ATPase	NA	E4ZFI9	Streptococcus_phage	36.1	8.1e-114
AVX21559.1|2376443_2376791_-	transcriptional regulator, ArsR family	NA	E4ZFI8	Streptococcus_phage	39.3	1.1e-12
AVX21560.1|2376898_2378500_-	drug resistance transporter, EmrB/QacA subfamily	NA	NA	NA	NA	NA
AVX21561.1|2378505_2378937_-	DNA-binding transcriptional regulator, MarR family	NA	NA	NA	NA	NA
AVX21562.1|2379048_2379633_-	RNA polymerase, sigma-24 subunit, RpoE	NA	NA	NA	NA	NA
AVX21563.1|2379678_2380356_-	putative membrane protein YphA, DoxX/SURF4 family	NA	NA	NA	NA	NA
AVX21564.1|2380604_2380967_+	transcriptional regulator, HxlR family	NA	NA	NA	NA	NA
AVX21565.1|2380967_2382719_+	Signal transduction histidine kinase	NA	NA	NA	NA	NA
AVX21566.1|2382798_2385960_-	Fe-S oxidoreductase	NA	NA	NA	NA	NA
AVX21567.1|2386227_2386440_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AVX21568.1|2386663_2386885_+	hypothetical protein	NA	NA	NA	NA	NA
AVX21569.1|2386891_2387653_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21570.1|2387983_2389279_-	Transposase domain (DUF772)	NA	NA	NA	NA	NA
AVX21571.1|2389534_2389804_+	hypothetical protein	NA	NA	NA	NA	NA
AVX21572.1|2390435_2391080_-|portal	phage portal protein, HK97 family	portal	A0A2K5B287	Erysipelothrix_phage	63.5	6.7e-64
AVX21573.1|2391214_2391469_-	prevent-host-death family protein	NA	NA	NA	NA	NA
AVX21574.1|2391894_2393082_+	putative arabinose efflux permease, MFS family	NA	NA	NA	NA	NA
AVX21575.1|2393065_2393518_+	transcriptional regulator, MarR family	NA	NA	NA	NA	NA
AVX21576.1|2393532_2393829_+	alkylhydroperoxidase AhpD family core domain-containing protein	NA	NA	NA	NA	NA
AVX21577.1|2394050_2394473_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21578.1|2394497_2395031_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21579.1|2395175_2395478_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21580.1|2395478_2397065_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21581.1|2397077_2397512_-	hypothetical protein	NA	G9FHA5	Rhodococcus_phage	59.7	4.8e-42
AVX21582.1|2397495_2397759_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21583.1|2397760_2398411_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A7RTQ5	Clostridium_phage	37.6	2.0e-15
AVX21584.1|2398412_2398655_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21585.1|2398690_2399047_-	protein of unknown function (DUF4907)	NA	NA	NA	NA	NA
AVX21586.1|2399064_2400417_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21587.1|2400424_2400616_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21588.1|2400620_2401769_-	hypothetical protein	NA	A0A0M5M1G2	Caulobacter_phage	40.0	2.3e-06
AVX21589.1|2401771_2403664_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21590.1|2403663_2404020_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21591.1|2404024_2406838_-	tape measure domain-containing protein	NA	U5PSU7	Bacillus_virus	31.1	6.8e-28
AVX21592.1|2406841_2406988_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21593.1|2407055_2407412_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21594.1|2407434_2407839_-|tail	Phage tail tube protein	tail	A0A1B0XTL5	Freshwater_phage	55.6	9.4e-32
AVX21595.1|2407853_2408573_-	hypothetical protein	NA	A0A1B0XTM3	Freshwater_phage	40.3	1.9e-35
AVX21596.1|2408572_2408725_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21597.1|2408721_2409114_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21598.1|2409126_2409480_-|tail	Bacteriophage HK97-gp10, putative tail-component	tail	A0A1J0MCP5	Streptomyces_phage	30.0	2.7e-06
AVX21599.1|2409490_2409787_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21600.1|2409780_2410248_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21601.1|2410263_2410395_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21602.1|2410441_2411395_-|capsid	phage major capsid protein, HK97 family	capsid	D2J006	Enterococcus_phage	59.4	2.7e-98
AVX21603.1|2411416_2412001_-	protein of unknown function (DUF4355)	NA	NA	NA	NA	NA
AVX21604.1|2412099_2412276_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21605.1|2412281_2413703_-	Phage Mu protein F like protein	NA	B5LPR2	Bacillus_virus	21.0	7.7e-12
AVX21606.1|2413702_2415142_-|portal	Phage portal protein, SPP1 Gp6-like	portal	A0A0N7GFE4	Paenibacillus_phage	34.6	3.1e-45
AVX21607.1|2415141_2416401_-|terminase	phage terminase, large subunit, PBSX family	terminase	B6CXD2	Clostridium_phage	51.0	2.7e-117
AVX21608.1|2416390_2416837_-|terminase	phage terminase small subunit	terminase	A0A0A8WDX8	Clostridium_phage	61.6	5.3e-36
AVX21609.1|2416899_2417100_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21610.1|2417135_2417282_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21611.1|2417288_2417504_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21612.1|2417516_2417801_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21613.1|2418007_2418490_-	phage transcriptional activator, RinA family	NA	NA	NA	NA	NA
AVX21614.1|2418490_2419072_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21615.1|2419130_2419277_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21616.1|2419267_2419654_-	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA	M4ZS69	Bacillus_phage	34.7	8.2e-09
AVX21617.1|2419628_2419757_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21618.1|2419753_2420074_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21619.1|2420093_2420894_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21620.1|2420897_2421200_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21621.1|2421317_2421779_-	hypothetical protein	NA	Q6JIG5	Burkholderia_virus	60.5	4.9e-45
AVX21622.1|2421775_2421976_-	single stranded DNA-binding protein (ssb)	NA	A0A141DZL2	Streptococcus_phage	63.5	5.7e-14
AVX21623.1|2421992_2422811_-	DNA replication protein DnaC	NA	A0A0A0RNN8	Bacillus_phage	33.7	2.0e-28
AVX21624.1|2422851_2423679_-	replicative DNA helicase loader DnaB	NA	A0A1L2JY26	Aeribacillus_phage	43.1	1.1e-21
AVX21625.1|2423686_2423986_-	LysM domain-containing protein	NA	NA	NA	NA	NA
AVX21626.1|2423955_2424192_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21627.1|2424247_2425201_-	3'-5' exoribonuclease	NA	NA	NA	NA	NA
AVX21628.1|2425200_2426028_-	recombination protein RecT	NA	S6AVW6	Thermus_phage	61.1	2.0e-76
AVX21629.1|2426043_2426982_-	putative phage-type endonuclease	NA	S6C475	Thermus_phage	61.3	8.7e-97
AVX21630.1|2426978_2427098_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21631.1|2427099_2427270_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21632.1|2427374_2427923_-	helix-turn-helix protein	NA	NA	NA	NA	NA
AVX21633.1|2428147_2428486_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21634.1|2428501_2428750_-	hypothetical protein	NA	NA	NA	NA	NA
AVX21635.1|2428763_2428973_-	helix-turn-helix protein	NA	NA	NA	NA	NA
AVX21636.1|2429101_2429407_+	Transcriptional regulator, contains XRE-family HTH domain	NA	I3VYY8	Thermoanaerobacterium_phage	35.1	9.6e-05
AVX21637.1|2429409_2429724_+	hypothetical protein	NA	NA	NA	NA	NA
AVX21638.1|2429842_2430070_-	putative transcriptional regulator	NA	I3VYY8	Thermoanaerobacterium_phage	38.5	4.2e-05
AVX21639.1|2430220_2430694_+	helix-turn-helix protein	NA	A0A0A8WFJ2	Clostridium_phage	46.2	2.5e-12
AVX21640.1|2430776_2431088_+	hypothetical protein	NA	NA	NA	NA	NA
AVX21641.1|2431172_2432315_+	hypothetical protein	NA	A0A1S5SAB0	Streptococcus_phage	38.5	8.5e-54
AVX21642.1|2432561_2433077_+	hypothetical protein	NA	NA	NA	NA	NA
AVX21643.1|2433161_2433500_+	proteic killer suppression protein	NA	NA	NA	NA	NA
AVX21644.1|2433492_2434593_+	addiction module antidote protein, HigA family	NA	A0A075BTZ7	Microcystis_phage	42.0	1.5e-10
AVX21645.1|2434735_2436163_+	site-specific DNA recombinase	NA	A0A097BY75	Enterococcus_phage	43.8	4.4e-100
AVX21646.1|2436159_2437509_-	23S rRNA m(5)U-1939 methyltransferase	NA	A0A2K5B251	Erysipelothrix_phage	40.3	1.1e-79
AVX21647.1|2437510_2438221_-	N-acylneuraminate cytidylyltransferase/CMP-N,N'-diacetyllegionaminic acid synthase	NA	A0A1B1IVD3	uncultured_Mediterranean_phage	32.5	4.2e-11
