assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003044255.1_ASM304425v1	CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	1	502869-502988	1	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	Orphan	ATAAAGGTATCGTCTCTTAACCTTTATCAACTGAGCTAAT	40	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	NA|145aa|up_2|CP028435.1_499738_500173_+,NA|39aa|down_1|CP028435.1_504795_504912_-	NA|139aa|up_9|CP028435.1_491554_491971_-	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|344aa|up_8|CP028435.1_492093_493125_-	pfam01112, Asparaginase_2, Asparaginase	NA|287aa|up_7|CP028435.1_493233_494094_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|304aa|up_6|CP028435.1_494186_495098_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1108aa|up_5|CP028435.1_495094_498418_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|170aa|up_4|CP028435.1_498500_499010_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|96aa|up_3|CP028435.1_499149_499437_-	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed	NA|145aa|up_2|CP028435.1_499738_500173_+	NA	NA|183aa|up_1|CP028435.1_500123_500672_-	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882)	NA|485aa|up_0|CP028435.1_500795_502250_-	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|478aa|down_0|CP028435.1_503361_504795_-	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed	NA|39aa|down_1|CP028435.1_504795_504912_-	NA	NA|282aa|down_2|CP028435.1_505040_505886_+	pfam11207, DUF2989, Protein of unknown function (DUF2989)	NA|337aa|down_3|CP028435.1_506092_507103_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|361aa|down_4|CP028435.1_507261_508344_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|536aa|down_5|CP028435.1_508476_510084_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|326aa|down_6|CP028435.1_510093_511071_-	PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional	NA|393aa|down_7|CP028435.1_511074_512253_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|345aa|down_8|CP028435.1_512415_513450_-	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional	NA|160aa|down_9|CP028435.1_513746_514226_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase
GCA_003044255.1_ASM304425v1	CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	2	585668-588636	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	Type I-F	TTTCTAAGCCGCCTGTGTGGCGGTGAAC,TTTCTAAGCCGCCTGTGTGGCGGTGAAC,TTTCTAAGCCGCCTGTGTGGCGGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	49,49,9	49	TypeI-F	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	NA|45aa|up_7|CP028435.1_578482_578617_-,NA|65aa|up_3|CP028435.1_582756_582951_-,NA|55aa|down_8|CP028435.1_597588_597753_+	NA|796aa|up_9|CP028435.1_574793_577181_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|340aa|up_8|CP028435.1_577196_578216_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|45aa|up_7|CP028435.1_578482_578617_-	NA	NA|374aa|up_6|CP028435.1_578702_579824_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|113aa|up_5|CP028435.1_579871_580210_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|662aa|up_4|CP028435.1_580399_582385_+	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|65aa|up_3|CP028435.1_582756_582951_-	NA	NA|97aa|up_2|CP028435.1_582971_583262_+	pfam14537, Cytochrom_c3_2, Cytochrome c3	DinG|579aa|up_1|CP028435.1_583435_585172_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|87aa|up_0|CP028435.1_585168_585429_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	cas6f|225aa|down_0|CP028435.1_588783_589458_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|187aa|down_1|CP028435.1_589460_590021_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas7f|131aa|down_2|CP028435.1_590095_590488_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|down_3|CP028435.1_590513_591464_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|110aa|down_4|CP028435.1_591460_591790_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas8f|337aa|down_5|CP028435.1_591747_592758_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1138aa|down_6|CP028435.1_593013_596427_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_7|CP028435.1_596439_597417_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|55aa|down_8|CP028435.1_597588_597753_+	NA	NA|301aa|down_9|CP028435.1_597859_598762_-	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold
GCA_003044255.1_ASM304425v1	CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	3	1933993-1934500	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,8	8	Orphan	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	NA|50aa|up_3|CP028435.1_1930452_1930602_-,NA|41aa|up_2|CP028435.1_1931876_1931999_+,NA|39aa|down_9|CP028435.1_1946758_1946875_-	NA|92aa|up_9|CP028435.1_1926573_1926849_+	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|293aa|up_8|CP028435.1_1927061_1927940_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|159aa|up_7|CP028435.1_1927948_1928425_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|292aa|up_6|CP028435.1_1928537_1929413_-	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold	NA|149aa|up_5|CP028435.1_1929596_1930043_-	PRK10510, PRK10510, OmpA family lipoprotein	NA|72aa|up_4|CP028435.1_1930066_1930282_-	PRK10510, PRK10510, OmpA family lipoprotein	NA|50aa|up_3|CP028435.1_1930452_1930602_-	NA	NA|41aa|up_2|CP028435.1_1931876_1931999_+	NA	NA|286aa|up_1|CP028435.1_1931995_1932853_-	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]	NA|183aa|up_0|CP028435.1_1933210_1933759_+	pfam10973, DUF2799, Protein of unknown function (DUF2799)	NA|546aa|down_0|CP028435.1_1935192_1936830_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|97aa|down_1|CP028435.1_1936887_1937178_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|457aa|down_2|CP028435.1_1937402_1938773_+	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|330aa|down_3|CP028435.1_1938775_1939765_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|360aa|down_4|CP028435.1_1939891_1940971_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1028aa|down_5|CP028435.1_1940974_1944058_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|282aa|down_6|CP028435.1_1944165_1945011_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|228aa|down_7|CP028435.1_1945079_1945763_-	PRK10229, PRK10229, threonine efflux system; Provisional	NA|277aa|down_8|CP028435.1_1945872_1946703_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|39aa|down_9|CP028435.1_1946758_1946875_-	NA
GCA_003044255.1_ASM304425v1	CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4	3011481-3011571	4	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	Orphan	TGCTTTTGAGCGGGGATCCAGCTTTT	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	NA|42aa|up_1|CP028435.1_3010184_3010310_-,NA|207aa|down_0|CP028435.1_3011641_3012262_+,NA|58aa|down_4|CP028435.1_3015117_3015291_+,NA|48aa|down_6|CP028435.1_3016775_3016919_-,NA|115aa|down_9|CP028435.1_3019949_3020294_-	NA|94aa|up_9|CP028435.1_3000117_3000399_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|338aa|up_8|CP028435.1_3000419_3001433_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|291aa|up_7|CP028435.1_3001429_3002302_-	PRK11716, PRK11716, HTH-type transcriptional activator IlvY	NA|493aa|up_6|CP028435.1_3002535_3004014_+	PRK05225, PRK05225, ketol-acid reductoisomerase; Validated	NA|553aa|up_5|CP028435.1_3004640_3006299_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|86aa|up_4|CP028435.1_3006295_3006553_+	PRK11152, ilvM, acetolactate synthase 2 small subunit	NA|606aa|up_3|CP028435.1_3006652_3008470_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|537aa|up_2|CP028435.1_3008471_3010082_+	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|42aa|up_1|CP028435.1_3010184_3010310_-	NA	NA|378aa|up_0|CP028435.1_3010322_3011456_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|207aa|down_0|CP028435.1_3011641_3012262_+	NA	NA|173aa|down_1|CP028435.1_3012309_3012828_+	pfam14136, DUF4303, Domain of unknown function (DUF4303)	NA|292aa|down_2|CP028435.1_3013274_3014150_+	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_3|CP028435.1_3014343_3015126_-	PRK10699, PRK10699, phosphatidylglycerophosphatase B; Provisional	NA|58aa|down_4|CP028435.1_3015117_3015291_+	NA	NA|495aa|down_5|CP028435.1_3015246_3016731_-	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|48aa|down_6|CP028435.1_3016775_3016919_-	NA	NA|455aa|down_7|CP028435.1_3017182_3018547_-	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|404aa|down_8|CP028435.1_3018575_3019787_-	pfam05940, NnrS, NnrS protein	NA|115aa|down_9|CP028435.1_3019949_3020294_-	NA
GCA_003044255.1_ASM304425v1	CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	5	3026128-3026270	5	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	Orphan	TTAGGATGAAAGTGGACCAGAGGAAACCCTCTGAGCTGATTACAAA	46	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	NA|58aa|up_9|CP028435.1_3015117_3015291_+,NA|48aa|up_7|CP028435.1_3016775_3016919_-,NA|115aa|up_4|CP028435.1_3019949_3020294_-,NA|45aa|up_0|CP028435.1_3025752_3025887_+,NA|462aa|down_9|CP028435.1_3038243_3039629_-	NA|58aa|up_9|CP028435.1_3015117_3015291_+	NA	NA|495aa|up_8|CP028435.1_3015246_3016731_-	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|48aa|up_7|CP028435.1_3016775_3016919_-	NA	NA|455aa|up_6|CP028435.1_3017182_3018547_-	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|404aa|up_5|CP028435.1_3018575_3019787_-	pfam05940, NnrS, NnrS protein	NA|115aa|up_4|CP028435.1_3019949_3020294_-	NA	NA|86aa|up_3|CP028435.1_3020510_3020768_-	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown]	NA|671aa|up_2|CP028435.1_3020976_3022989_+	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|878aa|up_1|CP028435.1_3023025_3025659_-	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|45aa|up_0|CP028435.1_3025752_3025887_+	NA	NA|640aa|down_0|CP028435.1_3026858_3028778_-	pfam00563, EAL, EAL domain	NA|127aa|down_1|CP028435.1_3028787_3029168_-	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|118aa|down_2|CP028435.1_3029145_3029499_-	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|203aa|down_3|CP028435.1_3029514_3030123_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|472aa|down_4|CP028435.1_3030119_3031535_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|461aa|down_5|CP028435.1_3031561_3032944_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|358aa|down_6|CP028435.1_3032936_3034010_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|323aa|down_7|CP028435.1_3034147_3035116_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|1010aa|down_8|CP028435.1_3035205_3038235_-	TIGR03661, T1SS_VCA0849, type I secretion C-terminal target domain (VC_A0849 subclass)	NA|462aa|down_9|CP028435.1_3038243_3039629_-	NA
GCA_003044255.1_ASM304425v1	CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	6	3183688-3183781	6	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	Orphan	TTACGTAGCAAAATTTAACAATGG	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,WYL,csa3	NA|41aa|up_5|CP028435.1_3179096_3179219_-,NA|52aa|up_1|CP028435.1_3183231_3183387_-,NA|44aa|up_0|CP028435.1_3183527_3183659_+,NA|349aa|down_0|CP028435.1_3183974_3185021_+	NA|240aa|up_9|CP028435.1_3174517_3175237_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|130aa|up_8|CP028435.1_3175329_3175719_-	COG4729, COG4729, Uncharacterized conserved protein [Function unknown]	NA|678aa|up_7|CP028435.1_3175764_3177798_-	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|319aa|up_6|CP028435.1_3177901_3178858_-	cd13567, PBP2_TtGluBP, Substrate binding domain of Thermus thermophilus GluBP (TtGluBP) of TAXI family of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|41aa|up_5|CP028435.1_3179096_3179219_-	NA	NA|497aa|up_4|CP028435.1_3179533_3181024_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|146aa|up_3|CP028435.1_3181420_3181858_+	cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|400aa|up_2|CP028435.1_3181883_3183083_-	pfam13679, Methyltransf_32, Methyltransferase domain	NA|52aa|up_1|CP028435.1_3183231_3183387_-	NA	NA|44aa|up_0|CP028435.1_3183527_3183659_+	NA	NA|349aa|down_0|CP028435.1_3183974_3185021_+	NA	NA|723aa|down_1|CP028435.1_3185602_3187771_+	PRK11773, uvrD, DNA-dependent helicase II; Provisional	NA|287aa|down_2|CP028435.1_3187916_3188777_+	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|218aa|down_3|CP028435.1_3188859_3189513_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|128aa|down_4|CP028435.1_3189539_3189923_+	pfam03060, NMO, Nitronate monooxygenase	NA|361aa|down_5|CP028435.1_3189993_3191076_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|99aa|down_6|CP028435.1_3191079_3191376_-	pfam11731, Cdd1, Pathogenicity locus	NA|225aa|down_7|CP028435.1_3191441_3192116_-	cd11530, NTP-PPase_DR2231_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|195aa|down_8|CP028435.1_3192195_3192780_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|140aa|down_9|CP028435.1_3192796_3193216_-	pfam03918, CcmH, Cytochrome C biogenesis protein
