The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	39844	64742	4384460	tail,portal,terminase	Vibrio_phage(37.5%)	26	NA	NA
AVV81941.1|39844_40192_+	hypothetical protein	NA	A0A0U2SAZ1	Escherichia_phage	54.0	5.0e-26
AVV81942.1|40548_41082_+	glycoside hydrolase	NA	A0A1S5R1I9	Pseudomonas_phage	39.2	4.7e-23
AVV81943.1|41062_41566_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81944.1|41787_42024_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81945.1|41977_42511_+	DNA packaging protein	NA	O64316	Escherichia_phage	48.1	9.8e-37
AVV81946.1|42485_44486_+|terminase	terminase	terminase	A0A1B0Z2K0	Pseudomonas_phage	50.8	1.9e-194
AVV81947.1|44514_44721_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81948.1|44830_46399_+|portal	portal protein	portal	K7PHM5	Enterobacterial_phage	46.2	1.7e-116
AVV81949.1|46463_48398_+	peptidase S14	NA	A0A1W6JT88	Pseudomonas_phage	59.5	3.1e-197
AVV81950.1|48578_48902_+	DNA breaking-rejoining protein	NA	K7PJY3	Enterobacterial_phage	44.4	9.5e-11
AVV81951.1|48894_49260_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81952.1|49269_49827_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81953.1|49885_50311_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81954.1|50307_51027_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81955.1|51068_55028_+|tail	tail protein	tail	A0A2I7S9D9	Vibrio_phage	37.2	2.7e-38
AVV81956.1|55154_55526_+	hypothetical protein	NA	A0A2I7QS24	Vibrio_phage	50.0	1.0e-24
AVV81957.1|55625_58061_+	hypothetical protein	NA	A0A2I7QXQ4	Vibrio_phage	62.7	2.4e-284
AVV81958.1|58073_59018_+	hypothetical protein	NA	A0A2I7S8P4	Vibrio_phage	42.6	2.5e-67
AVV81959.1|59010_59313_+	hypothetical protein	NA	A0A2I7S8T9	Vibrio_phage	33.3	1.2e-07
AVV81960.1|59336_59633_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81961.1|59636_61466_+	hypothetical protein	NA	A0A088C4B7	Shewanella_sp._phage	59.3	4.1e-143
AVV81962.1|61572_61740_+	hypothetical protein	NA	A0A2I7QRW3	Vibrio_phage	61.8	2.1e-09
AVV81963.1|61782_62124_-	hypothetical protein	NA	NA	NA	NA	NA
AVV81964.1|62820_63018_+	hypothetical protein	NA	NA	NA	NA	NA
AVV81965.1|63081_63501_+	DNA polymerase V	NA	A0A1B1ITQ0	uncultured_Mediterranean_phage	48.1	2.7e-21
AVV81966.1|63488_64742_+	XRE family transcriptional regulator	NA	I6RSM4	Salmonella_phage	43.4	1.2e-90
>prophage 2
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	235727	245842	4384460		Faustovirus(12.5%)	15	NA	NA
AVV82127.1|235727_236942_+	cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	31.4	2.3e-33
AVV82128.1|236980_237364_+	FeS cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	76.6	2.2e-51
AVV82129.1|237329_237443_-	hypothetical protein	NA	NA	NA	NA	NA
AVV82130.1|237489_237702_+	iron-sulfur cluster assembly protein	NA	A0A2H4N7N5	Lake_Baikal_phage	48.0	3.3e-12
AVV82131.1|237718_238243_+	cobalamin 5'-phosphate synthase	NA	NA	NA	NA	NA
AVV82132.1|238310_240173_+	molecular chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	38.8	1.9e-103
AVV82133.1|240231_240519_+	2Fe-2S ferredoxin ferredoxin, 2Fe-2S type, ISC system	NA	NA	NA	NA	NA
AVV82134.1|240677_241583_+	ribosomal protein S6 modification protein	NA	I3ULC9	Synechococcus_phage	33.6	9.4e-40
AVV82135.1|241653_241851_+	hypothetical protein	NA	NA	NA	NA	NA
AVV82136.1|241823_241940_-	hypothetical protein	NA	NA	NA	NA	NA
AVV82137.1|242081_242249_+	hypothetical protein	NA	NA	NA	NA	NA
AVV82138.1|242446_242878_+	nucleoside diphosphate kinase	NA	K7YW26	Megavirus	40.2	1.1e-17
AVV82139.1|243115_243559_+	heat shock protein IbpA	NA	A0A2L0V0Y9	Agrobacterium_phage	49.5	2.4e-20
AVV82140.1|243629_244124_-	acetolactate synthase	NA	NA	NA	NA	NA
AVV82141.1|244123_245842_-	acetolactate synthase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	5.2e-55
>prophage 3
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	405695	413989	4384460	tRNA	uncultured_Caudovirales_phage(50.0%)	11	NA	NA
AVV82285.1|405695_407945_+	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	48.5	7.0e-84
AVV82286.1|408021_408648_+	membrane protein	NA	NA	NA	NA	NA
AVV82287.1|408656_409988_+	recombinase RarA	NA	G3MBE0	Bacillus_virus	39.6	2.6e-78
AVV82288.1|409980_410355_+	chromosome condensation protein CcrB	NA	A0A2H4J148	uncultured_Caudovirales_phage	37.0	6.3e-06
AVV82289.1|410373_411660_+|tRNA	seryl-tRNA synthetase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.5	2.0e-99
AVV82290.1|411677_411800_+	hypothetical protein	NA	NA	NA	NA	NA
AVV82291.1|411895_412234_-	sulfur transfer protein TusE	NA	NA	NA	NA	NA
AVV82292.1|412227_412509_-	DsrH family protein	NA	NA	NA	NA	NA
AVV82293.1|412508_412829_-	DsrE family protein	NA	NA	NA	NA	NA
AVV82294.1|412879_413269_-	sulfur transfer complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	41.7	6.1e-20
AVV82295.1|413329_413989_-	HflBKC-binding inner membrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	43.4	2.1e-33
>prophage 4
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	1433512	1440919	4384460	tRNA	Moraxella_phage(16.67%)	7	NA	NA
AVV83325.1|1433512_1434529_-	UGMP family protein	NA	A0A0R6PI74	Moraxella_phage	60.6	4.5e-115
AVV83326.1|1434747_1434963_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AVV83327.1|1434969_1435413_+|tRNA	aspartyl-tRNA amidotransferase subunit B	tRNA	A0A292GL36	Xanthomonas_phage	48.3	1.3e-26
AVV83328.1|1435496_1437221_+	DNA primase	NA	A0A1S5RF71	Helicobacter_phage	32.0	1.0e-42
AVV83329.1|1437360_1438821_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	47.3	4.9e-22
AVV83330.1|1438817_1439201_+	RNA polymerase sigma factor RpoD	NA	I1ZBD5	Salisaeta_icosahedral_phage	37.9	8.4e-06
AVV83331.1|1439701_1440919_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.1	1.4e-25
>prophage 5
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	3679738	3713014	4384460	integrase,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	36	3679291:3679306	3720169:3720184
3679291:3679306	attL	AACATCCACCCGTGTT	NA	NA	NA	NA
AVV85614.1|3679738_3680647_+|integrase	integrase	integrase	NA	NA	NA	NA
AVV85615.1|3680812_3680938_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85616.1|3680918_3681059_-	hypothetical protein	NA	NA	NA	NA	NA
AVV85617.1|3681107_3681302_+|transposase	transposase	transposase	NA	NA	NA	NA
AVV85618.1|3681273_3681696_+|transposase	transposase	transposase	NA	NA	NA	NA
AVV85619.1|3682256_3682487_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85620.1|3682800_3682944_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85621.1|3683127_3683244_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85622.1|3683914_3684952_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85623.1|3684968_3685796_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVV85624.1|3685858_3687250_-	succinate-semialdehyde dehdyrogenase	NA	NA	NA	NA	NA
AVV85625.1|3687467_3688586_-	glycerol dehydrogenase	NA	NA	NA	NA	NA
AVV85626.1|3688612_3688750_-	hypothetical protein	NA	NA	NA	NA	NA
AVV85627.1|3689075_3690353_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	8.1e-45
AVV85628.1|3690452_3691037_+|protease	Zn-dependent protease	protease	NA	NA	NA	NA
AVV85629.1|3691036_3691261_+|protease	Zn-dependent protease	protease	NA	NA	NA	NA
AVV85630.1|3691389_3692007_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
AVV85631.1|3692079_3692892_+	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
AVV85632.1|3693064_3694225_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.4	3.0e-46
AVV85633.1|3694252_3697477_+	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA	NA
AVV85634.1|3697620_3698331_+	pseudouridylate synthase	NA	NA	NA	NA	NA
AVV85635.1|3698391_3699165_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AVV85636.1|3699361_3700450_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	58.1	2.6e-12
AVV85637.1|3700698_3702018_-	magnesium transporter	NA	NA	NA	NA	NA
AVV85638.1|3702090_3702798_-	hypothetical protein	NA	NA	NA	NA	NA
AVV85639.1|3703570_3704746_+	endonuclease	NA	NA	NA	NA	NA
AVV85640.1|3705048_3706239_+	50S rRNA methyltransferase	NA	NA	NA	NA	NA
AVV85641.1|3706407_3707070_-	ribose 5-phosphate isomerase	NA	NA	NA	NA	NA
AVV85642.1|3707300_3708233_+	membrane protein	NA	NA	NA	NA	NA
AVV85643.1|3708314_3709211_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AVV85644.1|3709417_3710347_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85645.1|3710452_3710791_-	zinc chelation protein SecC	NA	NA	NA	NA	NA
AVV85646.1|3711067_3711208_-	hypothetical protein	NA	NA	NA	NA	NA
AVV85647.1|3711310_3711547_-	hypothetical protein	NA	K7PLZ2	Enterobacterial_phage	52.5	1.3e-12
AVV85648.1|3711839_3712259_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85649.1|3712393_3713014_-|transposase	transposase	transposase	A0A1X9I6E7	Streptococcus_phage	40.7	2.6e-33
3720169:3720184	attR	AACACGGGTGGATGTT	NA	NA	NA	NA
>prophage 6
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	3832878	3840346	4384460		Staphylococcus_phage(50.0%)	7	NA	NA
AVV85767.1|3832878_3834546_-	heme ABC transporter ATP-binding protein	NA	A0A1V0SKJ1	Klosneuvirus	27.9	2.5e-38
AVV85768.1|3834735_3835989_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.4	2.7e-101
AVV85769.1|3836189_3836639_+	NrdR family transcriptional regulator	NA	NA	NA	NA	NA
AVV85770.1|3836746_3837901_+	riboflavin biosynthesis protein RibD	NA	A0A1V0SE20	Indivirus	35.5	8.9e-51
AVV85771.1|3837912_3838569_+	riboflavin synthase subunit alpha	NA	A0A2H4PQS5	Staphylococcus_phage	34.5	1.3e-27
AVV85772.1|3838634_3839738_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	39.7	2.6e-68
AVV85773.1|3839869_3840346_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	47.0	2.1e-30
>prophage 7
CP028435	Shewanella putrefaciens strain WS13 chromosome, complete genome	4384460	3866351	3881435	4384460	tRNA	uncultured_Mediterranean_phage(25.0%)	15	NA	NA
AVV85793.1|3866351_3867647_+	enolase phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	58.9	3.0e-132
AVV85794.1|3867746_3868046_+	cell division protein FtsB	NA	NA	NA	NA	NA
AVV85795.1|3868060_3868813_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AVV85796.1|3868853_3869339_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
AVV85797.1|3869360_3870443_+|tRNA	tRNA pseudouridine synthase D	tRNA	NA	NA	NA	NA
AVV85798.1|3870439_3871189_+	stationary phase survival protein SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.7	1.0e-71
AVV85799.1|3871185_3871821_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	4.1e-34
AVV85800.1|3871916_3872798_+	peptidase M23B peptidase M23B	NA	I3PV79	Clostridium_phage	31.9	6.9e-11
AVV85801.1|3872879_3873860_+	RNA polymerase sigma factor	NA	F4YCU2	Synechococcus_phage	32.9	6.4e-34
AVV85802.1|3873837_3873960_+	hypothetical protein	NA	NA	NA	NA	NA
AVV85803.1|3873956_3876527_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.2	5.4e-32
AVV85804.1|3876909_3877983_+	recombinase RecA recombinase A	NA	A0A2D1GPX2	Mycobacterium_phage	62.2	1.1e-111
AVV85805.1|3878057_3878324_+	recombinase RecX regulatory protein RecX	NA	NA	NA	NA	NA
AVV85806.1|3878320_3878470_+	recombinase RecX	NA	NA	NA	NA	NA
AVV85807.1|3878810_3881435_+|tRNA	alanyl-tRNA synthetase	tRNA	A0A1V0SK38	Klosneuvirus	38.9	1.6e-79
