The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	1156535	1163958	3026819		Hokovirus(33.33%)	8	NA	NA
AVU79991.1|1156535_1156919_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
AVU79992.1|1156940_1157924_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
AVU79993.1|1157938_1158952_+	glycosyl transferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
AVU79994.1|1159160_1160651_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
AVU79995.1|1160662_1161487_+	NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	7.4e-68
AVU79996.1|1161499_1161808_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AVU79997.1|1161868_1162273_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
AVU79998.1|1162401_1163958_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 2
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	1252205	1354090	3026819	holin,portal,head,tRNA,capsid,tail,protease,terminase,integrase	Listeria_phage(74.19%)	112	1277891:1277907	1319556:1319572
AVU80104.1|1252205_1253258_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
AVU80105.1|1253257_1255666_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AVU80106.1|1255826_1256528_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	3.0e-33
AVU80107.1|1256541_1259952_+	ABC transporter permease	NA	NA	NA	NA	NA
AVU80108.1|1260049_1260502_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AVU80109.1|1260517_1263718_+	MMPL family transporter	NA	NA	NA	NA	NA
AVU80110.1|1263824_1264499_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	7.5e-50
AVU80111.1|1264536_1265463_-	ribonuclease HIII	NA	NA	NA	NA	NA
AVU80112.1|1265616_1265880_+	cell division protein ZapA	NA	NA	NA	NA	NA
AVU80113.1|1265879_1266422_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AVU80114.1|1266514_1268227_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	5.1e-18
AVU80115.1|1268249_1270607_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
AVU80116.1|1270687_1270999_+	thiol reductase thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
AVU80117.1|1271074_1272886_+	UvrABC system protein C	NA	NA	NA	NA	NA
AVU80118.1|1273074_1274289_+	aspartate kinase	NA	NA	NA	NA	NA
AVU80119.1|1274344_1274839_-	DUF2507 domain-containing protein	NA	NA	NA	NA	NA
AVU80120.1|1274986_1275787_+	glutamate racemase	NA	NA	NA	NA	NA
AVU80121.1|1275799_1276546_+	ribonuclease PH	NA	NA	NA	NA	NA
AVU80122.1|1276549_1277161_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
AVU80123.1|1277197_1277722_+	metallophosphoesterase	NA	NA	NA	NA	NA
1277891:1277907	attL	AATCCCTCTCAGGACGT	NA	NA	NA	NA
AVU80124.1|1278007_1279162_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	94.8	2.0e-207
AVU80125.1|1279748_1280318_-	DUF4352 domain-containing protein	NA	R4IBV3	Listeria_phage	92.3	9.8e-11
AVU80126.1|1280368_1280821_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	89.3	9.7e-78
AVU80127.1|1280841_1281165_-	XRE family transcriptional regulator	NA	R4IDX0	Listeria_phage	73.8	4.1e-38
AVU80128.1|1281795_1281999_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80129.1|1282065_1282257_+	XRE family transcriptional regulator	NA	A0A059T5F8	Listeria_phage	87.1	5.4e-22
AVU80130.1|1282278_1282521_+	hypothetical protein	NA	A8ATD2	Listeria_phage	93.8	3.9e-41
AVU80131.1|1282523_1282709_+	hypothetical protein	NA	A8ATD3	Listeria_phage	96.7	1.4e-27
AVU80132.1|1283184_1283412_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80133.1|1283408_1283864_+	class I SAM-dependent methyltransferase	NA	A8ATY8	Listeria_phage	90.7	1.5e-81
AVU80134.1|1284047_1284263_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80135.1|1284341_1284839_+	hypothetical protein	NA	A8ATE4	Listeria_phage	84.7	1.5e-31
AVU80136.1|1284839_1285469_+	hypothetical protein	NA	A0A191KBJ8	Streptococcus_virus	57.9	2.4e-66
AVU80137.1|1285487_1285655_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80138.1|1285758_1285935_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	86.2	5.5e-21
AVU80139.1|1285931_1286333_+	hypothetical protein	NA	A8ATD9	Listeria_phage	95.5	7.8e-71
AVU80140.1|1286329_1286536_+	hypothetical protein	NA	A0A059T6C7	Listeria_phage	92.6	1.7e-29
AVU80141.1|1286535_1286733_+	hypothetical protein	NA	A0A059T654	Listeria_phage	91.8	5.7e-27
AVU80142.1|1286729_1287164_+	hypothetical protein	NA	A8ATS7	Listeria_phage	52.8	2.5e-38
AVU80143.1|1287366_1287750_+	hypothetical protein	NA	A8ATE8	Listeria_phage	100.0	2.5e-66
AVU80144.1|1287751_1288231_+	hypothetical protein	NA	R4IBM0	Listeria_phage	97.5	1.9e-76
AVU80145.1|1288243_1288933_+	DNA-binding protein	NA	R4IDY8	Listeria_phage	91.7	6.8e-123
AVU80146.1|1289011_1290253_+	ATP-dependent helicase	NA	A8ATF1	Listeria_phage	95.8	1.5e-213
AVU80147.1|1290275_1290758_+	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	98.8	9.3e-87
AVU80148.1|1290780_1293069_+	DNA primase	NA	R4IBW2	Listeria_phage	94.2	0.0e+00
AVU80149.1|1293402_1293720_+	VRR-NUC domain-containing protein	NA	A8ATF4	Listeria_phage	97.1	1.9e-51
AVU80150.1|1293721_1293934_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80151.1|1294523_1295054_+	hypothetical protein	NA	A8ATF5	Listeria_phage	78.9	3.4e-74
AVU80152.1|1295058_1295244_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80153.1|1295248_1295674_+	DUF722 domain-containing protein	NA	A8ATF6	Listeria_phage	97.2	2.2e-71
AVU80154.1|1295767_1296511_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
AVU80155.1|1296970_1297297_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	98.1	8.3e-55
AVU80156.1|1297296_1297611_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	98.1	5.0e-57
AVU81797.1|1297660_1298017_+	hypothetical protein	NA	A8AT94	Listeria_phage	97.0	7.7e-46
AVU80157.1|1298013_1299657_+|terminase	terminase large subunit	terminase	A8AT95	Listeria_phage	98.7	0.0e+00
AVU80158.1|1299668_1300799_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	93.1	1.7e-203
AVU80159.1|1300795_1301602_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	93.3	3.8e-133
AVU80160.1|1301628_1302780_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	93.2	2.7e-201
AVU80161.1|1302966_1303266_+	hypothetical protein	NA	A8ATA0	Listeria_phage	100.0	5.3e-48
AVU80162.1|1303249_1303615_+|head,tail	phage head-tail adapter protein	head,tail	A8ATA1	Listeria_phage	100.0	1.3e-64
AVU80163.1|1303611_1304013_+	hypothetical protein	NA	A8ATA2	Listeria_phage	100.0	2.1e-68
AVU80164.1|1304009_1304393_+	DUF3168 domain-containing protein	NA	A8ATA3	Listeria_phage	100.0	3.8e-67
AVU80165.1|1304414_1305002_+|tail	phage tail protein	tail	A8ATA4	Listeria_phage	99.5	5.8e-107
AVU80166.1|1305072_1305405_+	hypothetical protein	NA	A8ATA5	Listeria_phage	99.1	1.8e-52
AVU80167.1|1305620_1310432_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	70.3	0.0e+00
AVU80168.1|1310419_1312069_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	99.5	0.0e+00
AVU80169.1|1312081_1314376_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	94.0	0.0e+00
AVU80170.1|1314365_1315460_+	carbohydrate-binding protein CenC	NA	A0A059T7R4	Listeria_phage	87.9	2.2e-184
AVU80171.1|1315507_1315810_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	93.0	1.7e-38
AVU80172.1|1315809_1316067_+|holin	phage holin	holin	A8ATB7	Listeria_phage	69.0	3.2e-25
AVU80173.1|1316066_1316909_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	81.6	9.5e-127
AVU80174.1|1317012_1318011_+	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	44.8	3.9e-71
AVU80175.1|1318225_1318432_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
AVU80176.1|1319022_1319256_+	hypothetical protein	NA	R4IDW6	Listeria_phage	78.9	2.8e-28
AVU80177.1|1319252_1319444_+	hypothetical protein	NA	R4IBI5	Listeria_phage	88.9	8.9e-25
AVU80178.1|1319937_1321296_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1319556:1319572	attR	AATCCCTCTCAGGACGT	NA	NA	NA	NA
AVU80179.1|1321337_1321931_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80180.1|1322084_1322492_-	VOC family protein	NA	NA	NA	NA	NA
AVU80181.1|1322656_1323256_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
AVU80182.1|1323287_1323548_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80183.1|1323671_1325084_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
AVU80184.1|1325108_1325372_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
AVU80185.1|1325538_1326015_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
AVU80186.1|1326052_1326298_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80187.1|1326294_1327500_-	MFS transporter	NA	NA	NA	NA	NA
AVU80188.1|1327496_1327706_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80189.1|1327704_1328364_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AVU80190.1|1328405_1328600_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80191.1|1328666_1329515_-	YitT family protein	NA	NA	NA	NA	NA
AVU80192.1|1330133_1330847_+	trehalose operon repressor	NA	NA	NA	NA	NA
AVU80193.1|1330877_1332524_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
AVU80194.1|1334142_1334595_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
AVU80195.1|1334641_1335106_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80196.1|1335294_1336215_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AVU80197.1|1336234_1337482_-	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
AVU80198.1|1337465_1338296_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
AVU80199.1|1338431_1339571_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
AVU80200.1|1339651_1340047_-	XRE family transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
AVU80201.1|1340197_1340413_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVU80202.1|1340531_1341065_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80203.1|1341082_1341748_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80204.1|1342009_1342948_+	hypothetical protein	NA	NA	NA	NA	NA
AVU80205.1|1343062_1344346_+	trigger factor	NA	NA	NA	NA	NA
AVU80206.1|1344531_1345791_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
AVU80207.1|1345909_1346476_+	signal peptidase I	NA	NA	NA	NA	NA
AVU80208.1|1346510_1347080_+	signal peptidase I	NA	NA	NA	NA	NA
AVU80209.1|1347181_1347724_+	signal peptidase I	NA	NA	NA	NA	NA
AVU80210.1|1347733_1348597_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
AVU80211.1|1348593_1349379_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
AVU80212.1|1349512_1350373_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
AVU80213.1|1350644_1352723_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
AVU80214.1|1352785_1354090_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
>prophage 3
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	1828722	1861588	3026819	holin,portal,head,capsid,tail,protease,terminase	Erysipelothrix_phage(67.74%)	38	NA	NA
AVU80640.1|1828722_1829637_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1D8ETE4	Propionibacterium_phage	44.0	3.9e-33
AVU81811.1|1829626_1830040_-|holin	holin	holin	A0A2K5B2A2	Erysipelothrix_phage	57.0	1.5e-37
AVU80641.1|1830088_1830508_-	DUF1617 domain-containing protein	NA	A0A1S5RCP5	Lactobacillus_phage	26.5	2.4e-06
AVU80642.1|1830668_1834733_-	hypothetical protein	NA	A0A1B1P770	Bacillus_phage	41.8	8.7e-85
AVU80643.1|1834717_1835410_-|tail	phage tail protein	tail	A0A1L2BYA2	Clostridium_phage	29.0	1.7e-20
AVU80644.1|1835425_1837987_-|tail	phage tail protein	tail	A0A2K5B297	Erysipelothrix_phage	74.1	3.9e-83
AVU80645.1|1838054_1838699_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
AVU80646.1|1838950_1839334_-	hypothetical protein	NA	A0A2K5B295	Erysipelothrix_phage	64.2	5.4e-37
AVU80647.1|1839343_1839934_-|tail	phage tail protein	tail	A0A2K5B294	Erysipelothrix_phage	72.2	4.1e-76
AVU81812.1|1839935_1840244_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80648.1|1840270_1840702_-	hypothetical protein	NA	A0A2K5B292	Erysipelothrix_phage	59.4	7.6e-40
AVU80649.1|1840694_1841033_-|head,tail	head-tail adaptor protein	head,tail	A0A2K5B291	Erysipelothrix_phage	54.7	1.7e-23
AVU80650.1|1841029_1841341_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2K5B290	Erysipelothrix_phage	74.0	2.2e-36
AVU80651.1|1841351_1842569_-|capsid	phage major capsid protein	capsid	A0A2I4R671	Erysipelothrix_phage	48.0	1.1e-102
AVU81813.1|1842572_1843325_-|protease	Clp protease ClpP	protease	M1PLE5	Streptococcus_phage	55.7	1.9e-62
AVU80652.1|1843221_1844583_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	74.0	2.7e-179
AVU81814.1|1844650_1844911_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81815.1|1845042_1846635_-|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	84.8	7.2e-269
AVU80653.1|1846695_1846920_-	hypothetical protein	NA	A0A2K5B284	Erysipelothrix_phage	48.6	2.0e-15
AVU80654.1|1846909_1847107_-	DUF5049 domain-containing protein	NA	NA	NA	NA	NA
AVU80655.1|1847081_1847276_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80656.1|1847278_1847668_-	DUF4314 domain-containing protein	NA	E4ZFL7	Streptococcus_phage	71.0	3.1e-16
AVU80657.1|1847756_1849007_-	DNA modification methylase	NA	A0A2I4R670	Erysipelothrix_phage	62.0	7.4e-144
AVU81816.1|1848996_1849374_-	hypothetical protein	NA	A0A0B5HE03	Vibrio_phage	38.8	4.5e-12
AVU80658.1|1849598_1850381_-	S-adenosylmethionine synthetase	NA	NA	NA	NA	NA
AVU80659.1|1850385_1850964_-|terminase	terminase	terminase	A0A2K5B277	Erysipelothrix_phage	52.8	1.2e-53
AVU80660.1|1851096_1851462_-	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	56.9	1.4e-31
AVU80661.1|1851629_1852058_-	DUF1492 domain-containing protein	NA	A0A2K5B275	Erysipelothrix_phage	45.8	1.5e-27
AVU80662.1|1852054_1853407_-	ATP-dependent helicase	NA	A0A2K5B273	Erysipelothrix_phage	69.0	6.8e-159
AVU80663.1|1853406_1853691_-	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	60.2	3.5e-25
AVU80664.1|1853687_1853897_-	hypothetical protein	NA	NA	NA	NA	NA
AVU80665.1|1854034_1856278_-	DNA primase	NA	A0A1B0RXC5	Streptococcus_phage	49.7	4.8e-210
AVU80666.1|1856270_1856615_-	DUF4406 domain-containing protein	NA	A0A2K5B270	Erysipelothrix_phage	51.4	4.1e-28
AVU80667.1|1856607_1857378_-	phage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	50.8	2.7e-64
AVU80668.1|1857588_1859526_-	DNA polymerase I	NA	A0A2K5B2B0	Erysipelothrix_phage	68.6	7.7e-265
AVU80669.1|1859586_1860129_-	DUF2815 domain-containing protein	NA	A0A2K5B2A9	Erysipelothrix_phage	77.2	8.9e-78
AVU80670.1|1860130_1861273_-	DUF2800 domain-containing protein	NA	M1Q218	Streptococcus_phage	57.8	1.5e-122
AVU80671.1|1861273_1861588_-	rRNA biogenesis protein rrp5	NA	A0A2K5B2A7	Erysipelothrix_phage	41.5	6.6e-09
>prophage 4
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	1945771	1954057	3026819		Synechococcus_phage(33.33%)	8	NA	NA
AVU80746.1|1945771_1946338_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
AVU80747.1|1946334_1947384_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
AVU80748.1|1947402_1948830_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.9	8.1e-54
AVU80749.1|1948814_1951034_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	2.0e-160
AVU80750.1|1951026_1951710_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVU80751.1|1951713_1951959_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVU80752.1|1951970_1952684_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
AVU80753.1|1952764_1954057_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 5
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	2468357	2508013	3026819	terminase,holin,capsid,tail	Listeria_phage(96.08%)	59	NA	NA
AVU81240.1|2468357_2468555_-	hypothetical protein	NA	A8ATC6	Listeria_phage	66.7	2.3e-15
AVU81241.1|2468551_2468785_-	hypothetical protein	NA	A0A059T6E1	Listeria_phage	97.4	2.8e-36
AVU81242.1|2469479_2469704_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81243.1|2469700_2470327_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81244.1|2470658_2471402_-	peptidase	NA	A8ASL5	Listeria_phage	65.5	2.8e-74
AVU81245.1|2471401_2471659_-|holin	phage holin	holin	A8ATB7	Listeria_phage	70.2	3.2e-25
AVU81246.1|2471658_2471961_-	hypothetical protein	NA	A0A059T5E6	Listeria_phage	93.1	5.9e-39
AVU81247.1|2472011_2474177_-	hypothetical protein	NA	A8ATW1	Listeria_phage	87.2	0.0e+00
AVU81248.1|2474189_2475758_-|tail	phage tail protein	tail	A8ATW0	Listeria_phage	97.9	4.9e-302
AVU81249.1|2475754_2480554_-|tail	phage tail tape measure protein	tail	A8ATV9	Listeria_phage	89.6	0.0e+00
AVU81250.1|2480558_2480870_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	95.6	1.0e-41
AVU81251.1|2480866_2481298_-	hypothetical protein	NA	A0A0B5D0B8	Listeria_phage	98.6	1.1e-73
AVU81252.1|2481353_2482040_-	hypothetical protein	NA	A0A0B5CYK8	Listeria_phage	99.6	3.6e-116
AVU81253.1|2482044_2482416_-	hypothetical protein	NA	A8ATV5	Listeria_phage	100.0	8.5e-64
AVU81254.1|2482412_2482730_-	hypothetical protein	NA	A8ATV4	Listeria_phage	98.1	1.4e-51
AVU81255.1|2482719_2483085_-	hypothetical protein	NA	A0A0B5D114	Listeria_phage	95.0	4.2e-63
AVU81256.1|2483084_2483438_-	hypothetical protein	NA	A8ATV2	Listeria_phage	97.4	1.2e-59
AVU81257.1|2483607_2484480_-	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	99.7	4.5e-164
AVU81258.1|2484502_2485057_-	hypothetical protein	NA	A8ATU9	Listeria_phage	99.5	1.1e-88
AVU81259.1|2485152_2486196_-|capsid	minor capsid protein	capsid	A0A0B5D111	Listeria_phage	97.4	1.6e-195
AVU81260.1|2486200_2487760_-	hypothetical protein	NA	A0A0B5D0A6	Listeria_phage	97.3	3.1e-293
AVU81261.1|2487774_2489094_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	93.8	5.1e-252
AVU81262.1|2489086_2489812_-	helix-turn-helix domain-containing protein	NA	A0A0B5CTX0	Listeria_phage	68.5	4.4e-80
AVU81263.1|2489855_2490083_-	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	2.4e-32
AVU81264.1|2490358_2490793_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	76.4	3.1e-57
AVU81265.1|2490857_2491355_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	49.3	1.8e-32
AVU81266.1|2491344_2491527_-	hypothetical protein	NA	A8ASP6	Listeria_phage	79.3	3.6e-15
AVU81267.1|2491548_2492031_-	single-stranded DNA-binding protein	NA	A8ASP5	Listeria_phage	83.8	1.6e-70
AVU81268.1|2492031_2492286_-	hypothetical protein	NA	A0A059T5G2	Listeria_phage	92.8	3.4e-40
AVU81269.1|2492285_2492468_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81270.1|2492464_2492926_-	hypothetical protein	NA	D9J0I6	Brochothrix_phage	29.9	5.5e-12
AVU81271.1|2493090_2493300_-	hypothetical protein	NA	A8ATE0	Listeria_phage	100.0	1.7e-32
AVU81272.1|2493296_2493698_-	hypothetical protein	NA	A8ATD9	Listeria_phage	100.0	2.6e-74
AVU81273.1|2493918_2494479_-	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	100.0	9.4e-107
AVU81274.1|2494475_2494940_-	class I SAM-dependent methyltransferase	NA	A0A059T693	Listeria_phage	96.8	6.9e-87
AVU81275.1|2495004_2495613_-	hypothetical protein	NA	A8ATU1	Listeria_phage	49.5	1.4e-55
AVU81276.1|2496412_2496628_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81277.1|2496811_2497267_-	class I SAM-dependent methyltransferase	NA	A0A059T693	Listeria_phage	90.7	4.2e-81
AVU81278.1|2497263_2498238_-	DnaD domain protein	NA	A8ASN4	Listeria_phage	85.2	4.9e-151
AVU81279.1|2498254_2498893_-	single-stranded DNA-binding protein	NA	A8ASN3	Listeria_phage	76.3	2.9e-80
AVU81280.1|2498897_2499374_-	hypothetical protein	NA	A0A059T5F1	Listeria_phage	92.4	7.8e-70
AVU81281.1|2499370_2499565_-	hypothetical protein	NA	A0A059T6E8	Listeria_phage	95.3	1.8e-28
AVU81282.1|2499866_2500055_-	hypothetical protein	NA	A8ATY3	Listeria_phage	95.2	2.5e-27
AVU81283.1|2500162_2500378_-	hypothetical protein	NA	Q9T176	Listeria_phage	73.2	6.1e-22
AVU81284.1|2500374_2500908_-	hypothetical protein	NA	A0A059T5F0	Listeria_phage	84.4	1.1e-75
AVU81285.1|2501032_2501812_-	phage antirepressor Ant	NA	A0A059T6E7	Listeria_phage	96.9	2.0e-139
AVU81286.1|2501875_2502118_+	hypothetical protein	NA	A0A059T7Q3	Listeria_phage	98.8	1.5e-37
AVU81287.1|2502303_2502585_-	hypothetical protein	NA	Q9T180	Listeria_phage	96.8	1.4e-39
AVU81288.1|2502581_2502818_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	100.0	3.3e-37
AVU81289.1|2502883_2503114_+	hypothetical protein	NA	Q9T185	Listeria_phage	96.1	3.3e-34
AVU81290.1|2503042_2503309_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	100.0	2.5e-41
AVU81291.1|2503341_2503545_-	transcriptional regulator	NA	NA	NA	NA	NA
AVU81292.1|2503713_2504190_+	XRE family transcriptional regulator	NA	A8ASM2	Listeria_phage	54.9	2.2e-35
AVU81293.1|2504345_2504513_+	hypothetical protein	NA	NA	NA	NA	NA
AVU81294.1|2504568_2504787_+	zinc ribbon domain-containing protein	NA	A0A059T6E3	Listeria_phage	81.9	1.9e-26
AVU81295.1|2504802_2505525_+	hypothetical protein	NA	A0A059T7P9	Listeria_phage	98.3	2.8e-103
AVU81296.1|2505547_2506153_+	hypothetical protein	NA	NA	NA	NA	NA
AVU81297.1|2506165_2506588_+	hypothetical protein	NA	NA	NA	NA	NA
AVU81298.1|2506654_2508013_+	recombinase family protein	NA	Q8LTD8	Listeria_phage	98.5	2.5e-254
>prophage 6
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	2652174	2660018	3026819		Streptococcus_phage(50.0%)	7	NA	NA
AVU81434.1|2652174_2653146_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
AVU81435.1|2653153_2654122_-	gluconeogenesis factor	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
AVU81436.1|2654123_2654999_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
AVU81437.1|2655106_2656837_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	1.3e-175
AVU81438.1|2656878_2657940_-	galactose mutarotase	NA	NA	NA	NA	NA
AVU81439.1|2657956_2658940_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
AVU81440.1|2659058_2660018_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	3.4e-88
>prophage 7
CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3026819	2899958	2906483	3026819	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
AVU81653.1|2899958_2900777_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
AVU81654.1|2900773_2902642_-	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
AVU81655.1|2902628_2903033_-	phenylalanine racemase	NA	NA	NA	NA	NA
AVU81656.1|2903074_2903377_-	segregation and condensation protein B	NA	NA	NA	NA	NA
AVU81657.1|2903424_2903937_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
AVU81843.1|2903949_2904339_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
AVU81658.1|2904616_2905033_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
AVU81659.1|2905044_2905473_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81660.1|2905689_2906025_+	XRE family transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
AVU81661.1|2906030_2906483_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 1
CP025569	Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence	58517	0	13578	58517	transposase	Streptococcus_phage(25.0%)	11	NA	NA
AVU81896.1|428_665_-	XRE family transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
AVU81897.1|627_906_+	hypothetical protein	NA	NA	NA	NA	NA
AVU81846.1|1025_1253_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81847.1|1242_1851_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
AVU81848.1|2226_2772_-	DUF1541 domain-containing protein	NA	NA	NA	NA	NA
AVU81849.1|3263_5399_-	cadmium-transporting ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
AVU81850.1|5398_5758_-	cadmium resistance transcriptional regulator CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
AVU81851.1|6037_6592_+	resolvase	NA	A0A0F7LA37	Escherichia_phage	53.4	7.0e-38
AVU81852.1|6595_9511_+|transposase	DDE transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
AVU81853.1|10693_12739_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	31.0	1.0e-70
AVU81898.1|13014_13578_+	transposon DNA-invertase	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	2.0e-40
>prophage 2
CP025569	Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence	58517	17271	29704	58517		Streptococcus_phage(33.33%)	14	NA	NA
AVU81856.1|17271_19176_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.5	1.0e-99
AVU81857.1|19373_19607_-	copper chaperone	NA	NA	NA	NA	NA
AVU81858.1|19753_20044_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
AVU81859.1|20070_20775_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
AVU81860.1|20919_21492_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	42.6	3.9e-23
AVU81861.1|22229_22334_-	resolvase	NA	NA	NA	NA	NA
AVU81862.1|22408_23173_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
AVU81863.1|23169_23823_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.3	1.5e-23
AVU81864.1|23906_24329_-	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
AVU81865.1|25052_25241_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81866.1|25233_25638_-	topoisomerase	NA	F2Y1B5	Organic_Lake_phycodnavirus	30.1	2.5e-08
AVU81867.1|26277_26652_+	hypothetical protein	NA	NA	NA	NA	NA
AVU81868.1|26693_27008_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81899.1|27820_29704_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	5.6e-87
>prophage 3
CP025569	Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence	58517	32916	40009	58517	transposase	Erysipelothrix_phage(20.0%)	7	NA	NA
AVU81873.1|32916_34281_-	oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.5	1.9e-07
AVU81874.1|34904_35585_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.6e-119
AVU81875.1|36150_37653_-	hypothetical protein	NA	H2DE57	Erwinia_phage	46.0	5.2e-11
AVU81876.1|37656_38055_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81877.1|38228_38564_+	XRE family transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
AVU81878.1|38600_39131_-	hypothetical protein	NA	NA	NA	NA	NA
AVU81879.1|39244_40009_-	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	29.4	2.6e-06
>prophage 4
CP025569	Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence	58517	44686	47358	58517	transposase	Lactococcus_phage(66.67%)	3	NA	NA
AVU81886.1|44686_45913_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	60.6	6.2e-135
AVU81887.1|45881_46679_+|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	63.2	3.3e-81
AVU81888.1|46755_47358_+	DDE domain-containing protein	NA	U5P429	Shigella_phage	41.7	2.0e-33
>prophage 5
CP025569	Listeria monocytogenes strain PIR00540 plasmid pPIR00540, complete sequence	58517	50795	53342	58517		Enterococcus_phage(50.0%)	3	NA	NA
AVU81891.1|50795_51770_+	chromosome partitioning protein ParA	NA	F0PIG8	Enterococcus_phage	35.0	2.4e-33
AVU81892.1|51747_52044_+	replication and copy control-associated protein	NA	NA	NA	NA	NA
AVU81893.1|52046_53342_-	excinuclease ABC subunit A	NA	O64031	Bacillus_phage	44.4	4.6e-88
