assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_003032455.1_ASM303245v1	CP028349	Pantoea vagans strain PV989 chromosome, complete genome	1	194884-195031	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	TAGTACGTGAGGATGGCGAGCACTGCCCAACCGGAGCCTGGCAAGTAAGCCAGG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA,NA	NA|332aa|up_9|CP028349.1_184431_185427_-	PRK14987, PRK14987, HTH-type transcriptional regulator GntR	NA|232aa|up_8|CP028349.1_185529_186225_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|165aa|up_7|CP028349.1_186572_187067_+	PRK10140, PRK10140, N-acetyltransferase	NA|584aa|up_6|CP028349.1_187383_189135_-	PRK09615, ggt, gamma-glutamyltranspeptidase; Reviewed	NA|96aa|up_5|CP028349.1_189343_189631_+	pfam13779, DUF4175, Domain of unknown function (DUF4175)	NA|248aa|up_4|CP028349.1_189627_190371_-	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	NA|358aa|up_3|CP028349.1_190367_191441_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|282aa|up_2|CP028349.1_191442_192288_-	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|296aa|up_1|CP028349.1_192284_193172_-	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA	NA|439aa|up_0|CP028349.1_193225_194542_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|238aa|down_0|CP028349.1_195041_195755_-	PRK11614, livF, high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF	NA|256aa|down_1|CP028349.1_195756_196524_-	PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional	NA|424aa|down_2|CP028349.1_196520_197792_-	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional	NA|309aa|down_3|CP028349.1_197788_198715_-	PRK10740, PRK10740, high-affinity branched-chain amino acid ABC transporter permease LivH	NA|371aa|down_4|CP028349.1_198849_199962_-	PRK15404, PRK15404, high-affinity branched-chain amino acid ABC transporter substrate-binding protein	NA|132aa|down_5|CP028349.1_200357_200753_+	NF033213, matur_PanM, aspartate 1-decarboxylase autocleavage activator PanM	NA|286aa|down_6|CP028349.1_200813_201671_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|330aa|down_7|CP028349.1_201910_202900_-	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|223aa|down_8|CP028349.1_202889_203558_-	PRK10908, PRK10908, cell division ATP-binding protein FtsE	NA|565aa|down_9|CP028349.1_203563_205258_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional
GCA_003032455.1_ASM303245v1	CP028349	Pantoea vagans strain PV989 chromosome, complete genome	3	2935887-2935999	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	GTTCGCTGCGCGAACGGGCTCTGAGAGGGGTTTCGTTCGCCTG	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA,NA	NA|227aa|up_9|CP028349.1_2921350_2922031_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|353aa|up_8|CP028349.1_2922027_2923086_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|185aa|up_7|CP028349.1_2923408_2923963_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|178aa|up_6|CP028349.1_2924022_2924556_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|268aa|up_5|CP028349.1_2925116_2925920_-	PRK10536, PRK10536, phosphate starvation-inducible protein PhoH	NA|426aa|up_4|CP028349.1_2926475_2927753_-	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|371aa|up_3|CP028349.1_2927755_2928868_-	PRK10378, PRK10378, inactive ferrous ion transporter periplasmic protein EfeO; Provisional	NA|275aa|up_2|CP028349.1_2928923_2929748_-	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein	NA|495aa|up_1|CP028349.1_2929940_2931425_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1316aa|up_0|CP028349.1_2931876_2935824_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|359aa|down_0|CP028349.1_2936922_2937999_-	COG4763, COG4763, Predicted membrane protein [Function unknown]	NA|251aa|down_1|CP028349.1_2938462_2939215_-	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional	NA|223aa|down_2|CP028349.1_2939211_2939880_-	PRK15100, PRK15100, cystine ABC transporter permease	NA|267aa|down_3|CP028349.1_2939879_2940680_-	PRK11260, PRK11260, cystine ABC transporter substrate-binding protein	NA|329aa|down_4|CP028349.1_2940793_2941780_-	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated	NA|168aa|down_5|CP028349.1_2941983_2942487_-	PRK11582, PRK11582, flagella biosynthesis regulatory protein FliZ	NA|241aa|down_6|CP028349.1_2942537_2943260_-	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated	NA|323aa|down_7|CP028349.1_2943402_2944371_-	pfam13391, HNH_2, HNH endonuclease	NA|89aa|down_8|CP028349.1_2944642_2944909_-	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis	NA|429aa|down_9|CP028349.1_2945315_2946602_-	PRK06819, PRK06819, FliC/FljB family flagellin
GCA_003032455.1_ASM303245v1	CP028349	Pantoea vagans strain PV989 chromosome, complete genome	4	3673332-3673449	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	GTTGGCCCGGTAACGGGCGCACCTCACGGATGAGGTGCGT	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|140aa|up_8|CP028349.1_3665371_3665791_-,NA	NA|182aa|up_9|CP028349.1_3664825_3665371_+	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional	NA|140aa|up_8|CP028349.1_3665371_3665791_-	NA	NA|312aa|up_7|CP028349.1_3665876_3666812_-	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|470aa|up_6|CP028349.1_3666801_3668211_-	PRK11387, PRK11387, S-methylmethionine permease	NA|112aa|up_5|CP028349.1_3668347_3668683_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|106aa|up_4|CP028349.1_3668837_3669155_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|81aa|up_3|CP028349.1_3669452_3669695_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|138aa|up_2|CP028349.1_3669699_3670113_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|713aa|up_1|CP028349.1_3670082_3672221_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|320aa|up_0|CP028349.1_3672229_3673189_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|396aa|down_0|CP028349.1_3673664_3674852_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|177aa|down_1|CP028349.1_3675155_3675686_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|down_2|CP028349.1_3675836_3677009_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|512aa|down_3|CP028349.1_3677025_3678561_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|395aa|down_4|CP028349.1_3678726_3679911_-	PRK10864, PRK10864, putative methyltransferase; Provisional	NA|140aa|down_5|CP028349.1_3680070_3680490_+	PRK10996, PRK10996, thioredoxin 2; Provisional	NA|226aa|down_6|CP028349.1_3680571_3681249_+	COG3148, COG3148, Uncharacterized conserved protein [Function unknown]	NA|886aa|down_7|CP028349.1_3681388_3684046_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|452aa|down_8|CP028349.1_3684163_3685519_+	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|430aa|down_9|CP028349.1_3685850_3687140_-	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional
GCA_003032455.1_ASM303245v1	CP028349	Pantoea vagans strain PV989 chromosome, complete genome	5	3841467-3841587	4	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3,WYL	Orphan	GCGTTGGCACGTTCACGGGCGCACCTCAGGGATGAGGTGCGTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA,NA|86aa|down_3|CP028349.1_3844989_3845247_+	NA|248aa|up_9|CP028349.1_3829858_3830602_-	PRK09730, PRK09730, SDR family oxidoreductase	NA|958aa|up_8|CP028349.1_3830668_3833542_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|129aa|up_7|CP028349.1_3833622_3834009_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|366aa|up_6|CP028349.1_3834032_3835130_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|401aa|up_5|CP028349.1_3835562_3836765_-	PRK08013, PRK08013, oxidoreductase; Provisional	NA|393aa|up_4|CP028349.1_3836778_3837957_-	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|441aa|up_3|CP028349.1_3837953_3839276_-	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|193aa|up_2|CP028349.1_3839322_3839901_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|110aa|up_1|CP028349.1_3840071_3840401_+	PRK10972, PRK10972, cell division protein ZapA	NA|198aa|up_0|CP028349.1_3840717_3841311_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|413aa|down_0|CP028349.1_3841740_3842979_-	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|220aa|down_1|CP028349.1_3843258_3843918_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|302aa|down_2|CP028349.1_3844100_3845006_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|86aa|down_3|CP028349.1_3844989_3845247_+	NA	NA|241aa|down_4|CP028349.1_3845350_3846073_-	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|208aa|down_5|CP028349.1_3846217_3846841_-	PRK09304, PRK09304, arginine exporter ArgO	NA|292aa|down_6|CP028349.1_3846974_3847850_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|360aa|down_7|CP028349.1_3848040_3849120_-	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|388aa|down_8|CP028349.1_3849225_3850389_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|340aa|down_9|CP028349.1_3850440_3851460_-	PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional
GCA_003032455.1_ASM303245v1	CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	1	51138-51396	1	PILER-CR	no		csa3	Orphan	TTACTGATTACAGTGAACG	19	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,DinG,csa3,WYL	NA|310aa|up_0|CP028350.1_49941_50871_+,NA|95aa|down_2|CP028350.1_55313_55598_-,NA|74aa|down_9|CP028350.1_62500_62722_-	NA|322aa|up_9|CP028350.1_41730_42696_+	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only]	NA|243aa|up_8|CP028350.1_42645_43374_-	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|108aa|up_7|CP028350.1_43491_43815_-	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|223aa|up_6|CP028350.1_43811_44480_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|183aa|up_5|CP028350.1_44591_45140_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|113aa|up_4|CP028350.1_45140_45479_-	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|410aa|up_3|CP028350.1_45601_46831_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|393aa|up_2|CP028350.1_46924_48103_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|457aa|up_1|CP028350.1_48106_49477_-	PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase; Provisional	NA|310aa|up_0|CP028350.1_49941_50871_+	NA	NA|400aa|down_0|CP028350.1_52425_53625_+	pfam18607, HTH_54, ParA helix turn helix domain	NA|324aa|down_1|CP028350.1_53632_54604_+	pfam08775, ParB, ParB family	NA|95aa|down_2|CP028350.1_55313_55598_-	NA	NA|337aa|down_3|CP028350.1_55697_56708_-	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|281aa|down_4|CP028350.1_56709_57552_-	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates	NA|433aa|down_5|CP028350.1_57564_58863_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|250aa|down_6|CP028350.1_58917_59667_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|301aa|down_7|CP028350.1_59864_60767_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|484aa|down_8|CP028350.1_60966_62418_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|74aa|down_9|CP028350.1_62500_62722_-	NA
