The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	130449	136976	2996364	tail	Listeria_phage(33.33%)	10	NA	NA
AVU85598.1|130449_130902_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
AVU85599.1|130907_131243_-	XRE family transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
AVU85600.1|131459_131888_+	hypothetical protein	NA	NA	NA	NA	NA
AVU85601.1|131899_132316_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	37.9	3.2e-19
AVU85602.1|132595_132985_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
AVU85603.1|132997_133510_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
AVU85604.1|133557_133860_+	segregation and condensation protein B	NA	NA	NA	NA	NA
AVU85605.1|133901_134306_+	phenylalanine racemase	NA	NA	NA	NA	NA
AVU85606.1|134292_136161_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
AVU85607.1|136157_136976_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	1831811	1840097	2996364		Synechococcus_phage(33.33%)	8	NA	NA
AVU87204.1|1831811_1832378_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
AVU87205.1|1832374_1833424_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
AVU87206.1|1833442_1834870_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
AVU87207.1|1834854_1837074_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
AVU87208.1|1837066_1837750_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AVU87209.1|1837753_1837999_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AVU87210.1|1838010_1838724_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	6.7e-41
AVU87211.1|1838804_1840097_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 3
CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	2405885	2448884	2996364	capsid,tail,portal,coat,holin,terminase	Listeria_phage(93.65%)	69	NA	NA
AVU87739.1|2405885_2406083_-	hypothetical protein	NA	A8ATC6	Listeria_phage	66.1	1.7e-15
AVU87740.1|2406079_2406313_-	hypothetical protein	NA	A8ATC5	Listeria_phage	92.2	1.2e-34
AVU87741.1|2406545_2406938_-	hypothetical protein	NA	A8ATC1	Listeria_phage	100.0	5.1e-67
AVU87742.1|2406934_2407438_-	DUF4065 domain-containing protein	NA	A8ATC0	Listeria_phage	100.0	7.0e-93
AVU87743.1|2407840_2408767_-	N-acetylmuramoyl-L-alanine amidase	NA	R4ICC5	Listeria_phage	92.2	9.9e-170
AVU87744.1|2408768_2409002_-	hypothetical protein	NA	R4IBI3	Listeria_phage	92.2	1.7e-33
AVU87745.1|2408998_2409283_-|holin	holin	holin	R4IDW2	Listeria_phage	98.9	5.7e-44
AVU87746.1|2409295_2409661_-	hypothetical protein	NA	A8ASL3	Listeria_phage	100.0	1.3e-11
AVU87747.1|2409697_2409856_-	hypothetical protein	NA	Q9T1A1	Listeria_phage	76.9	7.1e-12
AVU87748.1|2409860_2410139_-	hypothetical protein	NA	A8ATB3	Listeria_phage	55.7	2.9e-16
AVU87749.1|2410135_2411212_-	hypothetical protein	NA	Q9T1A3	Listeria_phage	75.5	6.9e-90
AVU87750.1|2411208_2412243_-	hypothetical protein	NA	Q9T1A4	Listeria_phage	77.6	3.1e-148
AVU87751.1|2412243_2413269_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	90.6	6.4e-186
AVU87752.1|2413277_2414096_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	90.8	9.8e-145
AVU87753.1|2414097_2419461_-|tail	tail tape measure protein	tail	A8ASK6	Listeria_phage	90.7	0.0e+00
AVU87754.1|2419471_2420074_-	hypothetical protein	NA	A8ASK5	Listeria_phage	100.0	3.7e-109
AVU87755.1|2420079_2420502_-	hypothetical protein	NA	Q9T1A9	Listeria_phage	97.9	5.9e-69
AVU87756.1|2420554_2420887_-	Ig-like virion protein	NA	Q9T1B0	Listeria_phage	70.9	1.5e-30
AVU87757.1|2420816_2421251_-|tail	phage tail protein	tail	Q9T1B1	Listeria_phage	97.2	3.0e-76
AVU87758.1|2421253_2421661_-|capsid	minor capsid protein	capsid	A8ASK1	Listeria_phage	99.3	2.0e-66
AVU87759.1|2421660_2421999_-|capsid	minor capsid protein	capsid	A0A0B5CTV8	Listeria_phage	95.5	5.4e-57
AVU87760.1|2421998_2422361_-|capsid	minor capsid protein	capsid	A8ASJ9	Listeria_phage	93.3	2.1e-59
AVU87761.1|2422360_2422756_-	hypothetical protein	NA	A0A059T5E3	Listeria_phage	96.2	1.1e-64
AVU87762.1|2422774_2423776_-|coat	coat protein	coat	A0A059T6D4	Listeria_phage	99.4	6.3e-186
AVU87763.1|2423775_2424366_-	scaffolding protein	NA	A0A059T7N8	Listeria_phage	100.0	2.5e-86
AVU87764.1|2424444_2425584_-|capsid	minor capsid protein	capsid	A0A059T7W2	Listeria_phage	99.7	6.6e-208
AVU87765.1|2425589_2427080_-|portal	portal protein	portal	A0A0B5D0F2	Listeria_phage	99.0	2.4e-282
AVU87766.1|2427092_2428424_-|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	98.2	4.3e-259
AVU87767.1|2428392_2428935_-|terminase	terminase small subunit	terminase	A8ASJ1	Listeria_phage	97.2	7.8e-90
AVU87768.1|2428974_2429274_-	hypothetical protein	NA	A0A2H4JBC0	uncultured_Caudovirales_phage	40.7	3.8e-14
AVU87769.1|2429838_2430273_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	98.6	9.6e-75
AVU87770.1|2430291_2430456_-	hypothetical protein	NA	A8ASQ0	Listeria_phage	92.6	2.5e-20
AVU87771.1|2430584_2430968_-	hypothetical protein	NA	A8ASP8	Listeria_phage	96.1	7.4e-63
AVU87772.1|2430971_2431376_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	94.0	5.4e-64
AVU87773.1|2431320_2431512_-	hypothetical protein	NA	A8ASP6	Listeria_phage	93.7	2.6e-24
AVU87774.1|2431530_2432013_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	90.0	2.4e-74
AVU87775.1|2432012_2432414_-	hypothetical protein	NA	A8ATZ6	Listeria_phage	83.5	1.3e-54
AVU87776.1|2432424_2432652_-	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	96.0	1.9e-34
AVU87777.1|2432652_2432838_-	hypothetical protein	NA	NA	NA	NA	NA
AVU87778.1|2432837_2433128_-	hypothetical protein	NA	Q8W5X0	Listeria_phage	90.6	5.0e-43
AVU87779.1|2433124_2433310_-	hypothetical protein	NA	A0A059T5G1	Listeria_phage	98.4	1.2e-26
AVU87780.1|2433306_2433576_-	hypothetical protein	NA	A0A059T7S7	Listeria_phage	89.5	5.8e-38
AVU87781.1|2433588_2434290_-	hypothetical protein	NA	NA	NA	NA	NA
AVU87782.1|2434289_2434793_-	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	44.8	9.3e-29
AVU87783.1|2434971_2435151_-	hypothetical protein	NA	A0A059T5G0	Listeria_phage	93.2	3.5e-23
AVU87784.1|2435147_2435777_-	hypothetical protein	NA	A8ATY9	Listeria_phage	53.1	7.0e-50
AVU87785.1|2435779_2436010_-	hypothetical protein	NA	A0A059T7Z5	Listeria_phage	96.1	3.8e-38
AVU87786.1|2436006_2437269_-	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	55.5	2.5e-123
AVU87787.1|2437265_2438180_-	DnaD domain protein	NA	A0A0B5D175	Listeria_phage	89.2	5.2e-139
AVU87788.1|2438199_2439015_-	recombinase RecT	NA	A8ATY6	Listeria_phage	98.5	1.0e-149
AVU87789.1|2439014_2439974_-	hypothetical protein	NA	A8ATY5	Listeria_phage	98.1	8.1e-175
AVU87790.1|2440206_2440395_-	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	100.0	4.5e-29
AVU87791.1|2440503_2440719_-	hypothetical protein	NA	Q9T176	Listeria_phage	90.1	1.8e-26
AVU87792.1|2440715_2441249_-	hypothetical protein	NA	A8ATY1	Listeria_phage	87.9	1.8e-78
AVU87793.1|2441371_2442148_-	phage antirepressor Ant	NA	A0A0B5D0I2	Listeria_phage	95.3	2.7e-136
AVU87794.1|2442289_2442754_+	hypothetical protein	NA	A8ATX9	Listeria_phage	99.4	1.4e-79
AVU87795.1|2442731_2443085_-	hypothetical protein	NA	A8ATX8	Listeria_phage	93.2	1.8e-50
AVU87796.1|2443081_2443318_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	97.4	4.8e-36
AVU87797.1|2443382_2443742_+	DUF2513 domain-containing protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	26.3	2.1e-06
AVU87798.1|2443700_2443895_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	95.3	4.1e-25
AVU87799.1|2444118_2444385_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	97.7	4.7e-40
AVU87800.1|2444403_2444688_-	hypothetical protein	NA	A0A0B5D168	Listeria_phage	83.0	8.0e-38
AVU87801.1|2444707_2444908_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AVU87802.1|2445079_2445565_+	transcriptional regulator	NA	A8ASM2	Listeria_phage	61.2	8.0e-38
AVU87803.1|2445721_2445889_+	hypothetical protein	NA	NA	NA	NA	NA
AVU87804.1|2445943_2446594_+	hypothetical protein	NA	NA	NA	NA	NA
AVU87805.1|2446656_2448015_+	recombinase family protein	NA	Q9T193	Listeria_phage	97.6	3.6e-253
AVU87806.1|2448005_2448482_+	competence protein ComK	NA	NA	NA	NA	NA
AVU87807.1|2448536_2448884_-	XRE family transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
>prophage 4
CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	2606022	2613867	2996364		Streptococcus_phage(50.0%)	7	NA	NA
AVU87951.1|2606022_2606994_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
AVU87952.1|2607001_2607970_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
AVU87953.1|2607971_2608847_-	RNase adaptor protein RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
AVU87954.1|2608954_2610685_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	7.3e-174
AVU87955.1|2610726_2611788_-	galactose-1-epimerase	NA	NA	NA	NA	NA
AVU87956.1|2611804_2612788_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
AVU87957.1|2612907_2613867_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
